ULTRAVIOLET INACTIVATION OF THE MIDI VARIANT OF Qβ-RNA. DETERMINATION OF QUANTUM YIELD AND LESIONS PRODUCED

Abstract. –MDV-1 RNA is a sequenced variant of Q/β RNA. This study analyzed the ultraviolet photosensitivity of the RNA with respect to its activity as template for the Q/β replicase reaction. An assay to measure the template activity is described and the quantum yield for inactivation of the template activity is shown to be 1.1 × 10^-3. Both uridine hydrates and pyrimidine dimers were found in the irradiated RNA. 1.4 hydrates were produced per lethal hit while less than 0.2 dimers were present per lethal hit. The production of uridine hydrates paralleled ultraviolet inactivation. It was concluded that hydrates were the significant lesion in irradiated MDV-1 RNA.     

ULTRAVIOLET INACTIVATION OF THE MIDIVARIANT OF Qß RNA: THE SITES OF UV-INDUCED REPLICATION INHIBITION

Abstract— MDV-1 RNA is a small variant of bacteriophage Qß, and consists of complementary 'plus' (+) and 'minus' (-) strands. It is an active template in replication reactions catalyzed by Qß replicase. Using high-resolution polyacrylamide gel electrophoresis, we have located the sites of replication inhibition caused by irradiation of (+) and (-) MDV-1 template RNA with 254-nm light. Presumably, this inhibition was caused by uridine hydrates and pyrimidine cyclobutane dimers, which previously were shown to be formed at levels of 3.5 and 0.3 per (+) MDV-1 strand, respectively, at the dose used here (2500 Jm^-2). Each of the ten inhibition sites correspond to regions in the template which contain two or more pyrimidines, including at least one uridine. At each site, replication inhibition occurred at two or three adjacent bases. The sites of the photolesions with respect to the known primary sequence and proposed secondary structure of MDV-1, and the implications of this work for locating the sites of lesions produced by other agents which inhibit the replication of a small RNA molecule are discussed.     

ULTRAVIOLET INACTIVATION OF THE MIDI VARIANT OF QP RNA: CHARACTERIZATION OF TEMPLATE ACTIVITY

Abstract— MDV-1 RNA is a 218 nucleotide variant of bacteriophage Qβ RNA. Qβ replicase catalyzes the formation of a strand complementary to a single-stranded (SS) MDV-I template. Upon phenol extraction, the template and complementary strands become double-stranded (DS). Polyacrylamide gel electrophoresis of the products of this reaction revealed SS RNA, DS RNA, and discrete intermediate bands. UV irradiation of the template caused a decrease in DS RNA production which followed single-hit kinetics with a quantum yield of 1.6 × 10^--³. Concomitant with this diminished DS RNA production were increases in SS RNA and intermediate sized RNA. The latter was shown to consist of a full sized SS template annealed to a partially completed nascent strand. Upon electrophoresis, these partially completed duplexes migrated in the same positions as those found in the analysis of unirradiated template, suggesting that this RNA contains replication obstruction areas in which UV lesions cause an increase in replication inhibition.     

DNA SYNTHESIS-KINETICS, CELL DIVISION DELAY, AND POST-REPLICATION REPAIR AFTER UV IRRADIATION OF FROZEN CELLS OF E. COLI B/r

Abstract— Previous studies have shown that the relative yields of photoproducts produced in the DNA of Escherichia coli cells UV irradiated at -79°C differ from those produced at +21°C; the yield of DNA-protein cross-links was markedly enhanced at -79°C while the yield of thymine dimers was reduced. In the present studies, cells of E. coli B/r thy were frozen at -79°C, and then UV irradiated (254nm) while frozen(4.7 J m^-2), or after thawing (22 Jm^-2). Essentially the same survival, cell division delay, and DNA synthesis kinetics were observed for these two samples after irradiation, even though the UV fluence differed by a factor of ˜5. This supports previous observations that a correlation exists between the magnitude of the effects of UV radiation upon DNA synthesis kinetics and on cell survival. The weight average molecular weight of the pulse labeled DNA in the sample irradiated at +21°C was one-half that of the sample irradiated at -79°C, and complete repair of daughter-strand gaps was observed in both cases. Thus, UV-induced lesions produced in cells at -79°C (i.e. DNA-protein cross-links) appear to be amenable to post-replicational repair. While the overall DNA synthesis kinetics were the same for the two irradiation procedures, the apparent number of lesions produced per unit length of DNA was not. This suggests that each of the lesions produced in frozen cells, although apparently fewer in number, must cause a longer local delay in DNA synthesis than those lesions produced at +21°C.     

RECOVERY OF Escherichia coli K-12 FROM NEAR-ULTRAVIOLET RADIATION-INDUCED MEMBRANE DAMAGE

Abstract A wild-type Escherichia coli K-12 strain was irradiated with broad-band near-ultraviolet radiation (from Black-Light Blue fluorescent lamps) and after holding at 37°C for various times in a complex recovery medium, was assessed for viability on either complex medium (YENB) or minimal medium containing a high inorganic salt content. A near-ultraviolet radiation fluence was used which reduced the surviving fraction to approximately 10% when assessing for viability on the complex medium plates. A near-ultraviolet radiation induced sensitivity to inorganic salt was observed which was largely recoverable by holding treated cells in a complex recovery medium. The majority of the recovery process occurred in the initial 2 h post-irradiation holding period. No inhibition of the recovery process was produced by adding chloramphenicol (40 μg/m l ) or penicillin G (11 units/m l ) to the recovery medium, indicating that neither protein synthesis nor cell wall synthesis, respectively, were required for recovery. However, by adding bacitracin, an antibiotic which acts in part by inhibiting membrane synthesis, to the recovery medium, an effect on recovery from salt sensitivity was observed. At the concentrations of bacitracin used (0.6 and 0.2 units/m l ), little or no effect was observed on unirradiated cells, but both concentrations decreased the amount of recovery of irradiated cells. These results demonstrate that recovery from near-ultraviolet radiation-induced salt sensitivity occurs, it is independent of cell growth and the effect of bacitracin suggests that membrane synthesis may be required for recovery.     

Far-from-equilibrium fluctuations triggering RNA de novo synthesis

The fluctuations for very low total template concentration (5–10⁴ molecules/cm³) are calculated theoretically for a self-replicating RNA system catalyzed by highly purifiedQ replicase, by means of a center manifold stochastic treatment. The results provide an explanation of the experimental observation that at 0.15 mM nucleoside triphosphate concentration, no RNA can be synthesizedde novo, although the templatedirected synthesis proceeds normally. The role of intrinsic template fluctuations, under far-from-equilibrium conditions; in triggeringde novo (template-free) replication is elucidated.     

Photobiology of RNA bacteriophages. II. U.V.-irradiation of f2: effects on extracellular stages of infection and on early replication

Abstract— The effect of u.v. irradiation (2537 Å) on the RNA bacteriophage f2 has been studied with respect to the adsorption of f2 to E. coli K12 (male strain), the penetration of f2-RN A into the host cell and the conversion of the phage nucleic acid to the double-stranded replicative intermediate. The biological parameter most sensitive to u.v. was the plaque-forming ability of the phage. Its loss could be attributed to several factors. (1). A binding of capsid protein to phage nucleic acid interfering with host penetration by the f2-RNA. (2). Desorption of some irradiated phage at 37° from their attachment sites on the host. (3). Molecular alterations in the RNA preventing formation of the replicative intermediate within the host. The relationship of these factors to the lack of photoreactivability of irradiated f2 is discussed.     

USE OF POTASSIUM IODIDE AS A CHEMICAL ACTINOMETER

Abstract Aqueous solutions of KI were examined for use as chemical actinometers to measure 254 nm (germicidal) radiation. Irradiation results in electron ejection from iodide such that aqueous electrons and iodine atoms are formed. In the presence of N₂0, an electron scavenger, recombination of these two reactive species is eliminated and stoi-chiometric formation of triiodide occurs. The absorbance increase due to triiodide was followed and the quantum yield determined using either a radiometer or ferrioxalate actinometry to estimate the amount of energy absorbed by the KI solution. The quantum yield ( ø ) at 25°C was determined to be 0.26 using radiometry, and 0.224–0.233 using actinometry, depending on the radiation conditions. The following expression was used to measure the incident Huence rate for 254 radiation at a given temperature T for irradiation over a time interval Δt (s) fluence rate (W/m²) = 4. 96 × 10⁶ΔOD(λ)/ e(λ) [0.23+0.004(T-25)] δ t cm⁻¹
At temperatures other than 25°C, the temperature dependence of the quantum yield (0.004/°C) is taken into account by the term shown in the denominator. Because KI remains relatively blind to longer wavelengths such as those found in normal room light, measurements can be made in the presence of room light without having to work in a darkened room.     

CELL SURFACE DAMAGE IN CULTURED MAMMALIAN CELLS WITH SYNCHROTRON RADIATION AT 160 nm

Cultured mammalian cells (HeLa) were allowed to attach onto a membrane filter and were irradiated with 160 nm synchrotron radiation. The cells then were rinsed with medium, fixed, and stained. Some of the cells became detached from the membrane filter during irradiation before post-irradiation incubation at 37°C. The cells remaining attached to the membrane filter were released by trypsinization, collected and examined for dye-exclusion ability with eosin Y. The number of stained cells was increased when the cells were irradiated at 160 nm, while no such increase was observed in cells irradiated with synchrotron radiation at 220 nm, with a low pressure Hg lamp (predominantly 254 nm), or with gamma-rays of ⁶⁰Co. These results indicated that the cell surface was injured by irradiation with synchrotron radiation at 160 nm.     

TEMPERATURE-SENSITIVITY OF LIGHT-INDUCED PHASE SHIFTING OF THE CIRCADIAN CLOCK OF NEUROSPORA

Two new mutants of Neurospora craasa , designated hth-1 and hth-2 , have been isolated which allow clear expression of the circadian conidiation rhythm at high temperature (36°C). Both strains showed single-gene segregation and produced similar phenotypes but mapped to different genetic loci. These mutants allowed an analysis of the effect of temperature on (1) light-induced phase-shifting of the circadian rhythm, (2) period length of rhythm, and (3) growth rate. The amplitude of the phase response curve to light was drastically reduced as the temperature was increased from 25°C to 34°C. Phase advances were decreased more than phase delays. As previously reported (Sargent et al. , 1966), the period length of the rhythm is temperature-compensated below 30°C ( Q ₁₀˜ 1) but not well-compensated above 30°C ( Q ₁₀ 1.3–1.7). The decrease in amplitude of the light phase response curve occurred in both temperature ranges. Furthermore, the Q ₁₀ value was lowered by addition of yeast extract in the high temperature range but not in the low range. Q ₁₀ values for growth rate also differed in these strains both in the low temperature range (25–30°C) and the high temperature range (30–34°C).     

CHROMOPHORE OF A LONG-LIVED PHOTOPRODUCT FORMED WITH METARHODOPSIN III IN THE ISOLATED FROG RETINA

Abstract Long-lived photoproducts of frog rhodopsin in isolated retina and digitonin solution have been investigated by spectrophotometry and their chromophores have been analyzed by high-pressure liquid chromatography (HPLC). By irradiation (> 560 nm) at 3°C and pH 8.6, a product analogous to metarhodopsin III (MIII) is formed, whose absorption maximum is at about 450 nm. This product decays more slowly than MIII does. The results of HPLC analysis indicate that the chromophore of this photoproduct is 7- cis retinal and that of MIII is all-trans retinal. The product possessing 7- cis retinal is called 7- cis photoproduct. The amount of 7- cis isomer in rhodopsin solution irradiated at various temperatures between 15°C and –82°C, has been determined. The results suggest that the 7- cis photoproduct can be formed by the photoconversion of lumirhodopsin and metarhodopsin I.     

MEMBRANE DAMAGE AND RECOVERY ASSOCIATED WITH GROWTH DELAY INDUCED BY NEAR-UV RADIATION IN Escherichia coliK–12

Abstract— The growth delay induced by near-UV radiation has been largely attributed to injured tRNA's and to the stringent response. We report an associated membrane perturbation whose recovery determines substantial modifications in the behavior of log phase Escherichia coli K–12 exposed to sublethal doses of near-UV radiation (366 nm). When incubated at 37°C in plain nutrient broth, cells suffered a growth delay of about 100 min with parallel inhibition of several membrane functions. Conversely, when grown in conditions known to influence membrane activities, these were slightly inhibited and the growth delay lasted about 50 min. All the above conditions triggered the stringent response, characterized by an equivalent post-irradiation burst of intracellular guanosine 5'3' tetra and pentaphosphate and by a similar decay rate of the nucleotides accumulated at time 0 of the growth lag. According to our data the polyphosphates' half decay time in irradiated cells remains practically constant and close to 15 min. But, while cells from unsupplemented broth at 37°C resumed normal growth in around 100 min those with recovered membranes were rescued from growth inhibition in about one half of that time.     

PHOTOSENSITIZED BLEACHING OF β-CAROTENE WITH LIGHT AT 632·8 nm FROM A CONTINUOUS-WAVE GAS LASER

Abstract— β-Carotene was not affected when irradiated with a monochromatic beam of light (632·8 nm) from a continuous-wave gas laser. However, β -carotene undenvent numerous changes when irradiated in the presence of the photosensitizing dye toluidine blue. Initially there was a considerable decrease in the absorbance of the β-carotene, accompanied by small shifts of the absorption maxima to shorter wavelengths as well as the formation of two new peaks at 400 and 375 nm. Ultimately a complete bleaching of the solution was observed. By the use of column and thin layer chromatography up to 13 different compounds including cis-isomers, epoxides and possibly hydroxy compounds were shown to be formed by the photosensitization of the β-carotene. These reactions were found to be oxygen-dependent.     

PHOTOCHEMISTRY OF RETINOCHROME

Abstract— Retinochrome is a photopigment found in the visual cells of cephalopods. It has been considered to act as a supplier of the 11- cis -retinal required for synthesis of rhodopsin, because its all-trans chromophore is isomerized to 11- cis form in the light. Light and thermal reactions of squid retinochrome were investigated by low-temperature spectrophotometry.
On irradiation with green light at liquid-nitrogen temperature, retinochrome (λ_max 496 nm, – 190°C) is converted mainly to an intermediate lumiretinochrome (λ_max 475 nm, – 190°C), its chromophore being changed to 11- cis -retinal. On irradiation with blue light at - 190°C, retinochrome is changed to a photosteady–state mixture (λ_max 487 nm, – 190°C) composed mainly of retinochrome and lumiretinochrome, since lumiretinochrome is partially regenerated back to retinochrome. Similarly, irradiation of lumiretinochrome with blue light also results in the same photosteady-state mixture, which can be completely reverted to lumiretinochrome on re-irradiation with green light.
Lumiretinochrome is stable at a wide range of temperatures from – 190°C to about – 20°C. Above – 20°C, it is further converted, thermally, into metaretinochrome (λ_max 470 nm), which is the same bleached product as has been observed on irradiation of retinochrome at room temperatures. Thus, the light-bleaching process of retinochrome is rather simple compared with that of rhodopsin.     

BLUE-LIGHT INDUCED DEVELOPMENT OF CHLOROPLASTS IN ISOLATED SEEDLING ROOTS. PREFERENTIAL SYNTHESIS OF CHLOROPLAST RIBOSOMAL RNA SPECIES

Excised roots of pea seedlings (Pisum sativum var. “Alaska”) cultured in a synthetic medium under sterile conditions exhibit differentiation of functional chloroplasts from leucoplasts when irradiated with blue light (350–550 nm). This transition is a relatively slow process; nevertheless, the chloroplasts formed in blue light compare very well to leaf chloroplasts as far as microstructure and photosyn-thetic activities are concerned. Apparently certain activities of the apical meristem are mandatory in bringing about a transition from leucoplasts to chloroplasts in blue light. After short-time labelling with [^jH]uridine the synthesis of plastid ribosomal RNA (rRNA) was studied either during irradiation with blue and red light (600–700 nm), respectively, or in darkness. Polyacrylamide gel electrophoresis revealed that in blue light the synthesis of specific chloroplast rRNA species with molecular weights of 1.1 × 10⁶ and 0.56 × 10⁶ daltons is markedly stimulated. In contrast, in dark cultured roots these RNA species were synthesized to a limited extent only whereas the cytoplasmic rRNA species of 1.3 × 10⁶ and 0.7 × 10⁶ daltons molecular weight were preferentially formed. The same holds true for roots irradiated with red light.     

Facile Production and Rapid Purification of Functional Recombinant Qβ Replicase Heterotetramer Complex

We describe an improved method for the production of recombinant Qβ replicase heterotetramer. The successful expression of the soluble Qβ RNA polymerase complex depends on the EF-Ts and EF-Tu subunits being co-expressed prior to β-subunit expression. Efficient co-expression requires two different inducible operons to co-ordinate the expression of the heterotrimer. The complete heterotetramer enzyme complex is achieved by production of the recombinant S1-subunit of Qβ replicase in a separate host. This approach represents a facile way for producing and purifying large amounts of soluble and active recombinant Qβ replicase tetramer without the necessity of a His-tag for purification.     

IRRADIATION OF CIRCULAR DNA WITH 254 nm RADIATION OR SENSITIZATION IN THE PRESENCE OF Ag+ EVIDENCE FOR UNWINDING BY PHOTOPRODUCTS OTHER THAN PYRIMIDINE DIMERS

Abstract— Structural alterations of DNA irradiated with UV light were analyzed by the agarose gel technique. Relaxed, circular pAT 153 DNA molecules were sensitized by broad band radiation with a maximum at 313 nm in the presence of silver ions or irradiated with 254 nm light in buffer only. In both cases the electrophoretic mobility of DNA topoisomers was altered as a linear function of UV exposure. For DNA irradiated in the sensitized reaction the unwinding angle per site sensitive to Micrococcus luteus pyrimidine dimer endonuclease was found tobe–11.4°. This value is significantly smaller thanthe–14.3° already known for DNA topoisomers irradiated with 254 nm light. The irradiated DNAs were a very good substrate for the Escherichia coli photoreactivating enzyme (PRE). However, the photoenzymic removal of all sites sensitive to the endonuclease specific for pyrimidine dimers was not coupled to a full restoration of the original electrophoretic mobility. Thirty and 23% of the unwinding were still present in the photoreactivated topoisomers and the unwinding angles per pyrimidine dimer were then recalculatedas–10.1°and–8.7° for DNAs irradiated with 254 nm and sensitized, respectively. The limited difference between these two values could result from the different base composition of the pyrimidine dimers generated in the conditions of irradiation used. These results show that the tertiary structure of DNA is measureably altered by UV photodamages other than pyrimidine dimers.     

EFFECT OF GROWTH TEMPERATURE ON LIPID COMPOSITION and ULTRAVIOLET SENSITIVITY OF HUMAN CELLS

Human skin fibroblasts were incubated at either 25 or 37 degrees C before UV irradiation. Cells incubated at 25 degrees C were more resistant to near UV radiation than cells grown at 37 degrees C, but cells grown at the lower temperature were more sensitive to 254 nm radiation. Fatty acid analysis of membranes of cells showed that cells incubated at the lower temperature contained significantly higher amounts of linoleic acid (18:2) and linolenic acid (18:3) than cells incubated at 37 degrees C. To determine if this difference in fatty acid content of the membranes was responsible for the UV survival characteristics of cells incubated at different temperatures, cells were enriched with either linoleate or linolenate during a 37 degrees C incubation period. Gas chromatography revealed that cells incorporated the supplied fatty acid. Fatty acid enriched cells were then irradiated with near UV, and survival characteristics were compared to those obtained with cells grown at the lower incubation temperature. The results suggest that the different proportion of fatty acid content of the cells is not the cause of different UV sensitivities of cells grown at 25 degrees C compared to cells grown at 37 degrees C.     

CHANGE IN THE BASE COMPOSITION OF MESSENGER RNA OF ESCHERICHIA COLI BY ULTRAVIOLET IRRADIATION AND ITS RECOVERY

Abstract— The base composition of messenger RNA in Escherichia coli B/r and B _8–1 irradiated with ultraviolet (u.v.) light has been examined. The experimental results are as follows: (1) the synthesis of rapidly labeled RNA does not stop in ultraviolet irradiated bacteria. (2) The rapidly labeled RNA in irradiated cells shows a change in base composition corresponding to the formation of pyrimidine dimers in DNA molecules. The mole per cent of adenine component is increased with ultraviolet dose. The ratio of purine/pyrimidine becomes larger and the GC content smaller. (3) The base composition of the rapidly labeled RNA in irradiated bacteria reversed to that in unirradiated cells, when the irradiated cells were reactivated by experimental procedures for photoreactivation or dark reactivation. The reversion in the base composition corresponds well to the decrease in the amount of thymine dimers in DNA molecules. (4) The mechanism of the change in the base composition of rapidly labeled RNA caused by ultraviolet irradiation is discussed.     

PHOTOREACTIVATION ACTION SPECTRUM OF TOBACCO MOSAIC VIRUS-RIBONUCLEIC ACID INACTIVATED BY U.V. RADIATION*

Abstract— Initially photoreactivation of irradiated (2537 Å) nucleic acid on pinto bean increases linearly with time of illumination with white light of 250 ft-c. Maximum amounts of photo-reactivation depend on the quality of light used. The action spectrum shows a peak in the ‘black light’ region, where the greater amount of photoreactivation is found, and a shoulder in the blue light region. Maximum repair is obtained with ‘black light.’ Photoreactivation does not occur at wavelengths above 550 nm. Photoprotection by illumination of leaves prior to inoculation by irradiated RNA was not found. The action spectrum for photoreactivation does not resemble the action spectrum for photosynthesis.