A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterion

A combined theoretical and experimental study of the vibrational absorption (VA)/IR, vibrational circular dichroism (VCD), Raman and Raman optical activity (ROA) spectra of l-histidine in aqueous solution has been undertaken to answer the questions (i) what are the species present and (ii) which conformers of the species are present under various experimental conditions. The VA spectra of l-histidine have been measured in aqueous solution and the spectral bands which can be used to identify both species (cation, zwitterion, anion) and conformer of the species have been identified and subsequently used to identify the species (zwitterion) and conformer (gauche minus minus, gauche minus plus for the side chain dihedral angles) present in solution at pH 7.6. The VCD spectral intensities have been used subsequently in combination with further theoretical studies to confirm the conclusions that have been arrived at by only analyzing the VA/IR spectra. Finally a comparison of measured Raman and ROA spectra of l-histidine with Raman and ROA spectral simulations for the conformers and species derived from the combined VA/IR and VCD experimental and theoretical work is presented as a validation of the conclusions arrived at from VA/IR and VCD spectroscopy. The combination of VA/IR and VCD with Raman and ROA is clearly superior and both sets of experiments should be performed.     

Unimolecular photochemistry of 4-thiouracils

Unimolecular phototautomeric reactions in 4-thiouracil, 1-methyl-4-thiouracil and 6-aza-4-thiouracil were studied using the matrix-isolation technique combined with infrared absorption spectroscopy. For monomers of these compounds, isolated in solid argon at 10 K, an intramolecular proton-transfer photoreaction was observed. Upon UV (lambda > 345 nm) irradiation, the initial oxo-thione forms of 4-thiouracils were converted into the corresponding oxo-thiol tautomers. The photogenerated oxo-thiol isomers were identified by comparing their experimental IR spectra with the spectra theoretically calculated at the DFT(B3LYP)/6-311++G(2d,p) level. Good agreement between the observed and predicted pattern of spectral bands allowed a reliable identification. This is the first report on experimental observation of isomeric forms of 4-thiouracils other than the canonical oxo-thione tautomers.     

Structure of aqueous electrolyte solutions estimated by near infrared spectroscopy and chemometric analysis of spectral data

The IR spectra of aqueous solutions of MClO₄, MNO₃, MCl (M = Li, Na), CsCl, and Na₂SO₄ were measured at frequencies of 5400–7500 cm^?1 over a wide concentration range from 0.12 M up to saturation concentrations at 25°C. Chemometric analysis of the experimental data matrix was performed. Regularity was detected in distribution of the IR spectra of the studied aqueous solutions on the the plot of analysis scores by the principal component method depending on the nature of the anion-water interaction. The influence of the nature of the salt anion and cation on the water structure in aqueous electrolyte solutions was demonstrated. The existence and interconversion of the spectral forms of water with changing electrolyte concentration in solution were revealed.     

Laser Linewidth and Spectral Resolution in Infrared Scanning Sum Frequency Generation Vibrational Spectroscopy System

Sum frequency generation vibrational spectroscopy (SFG-VS) is a robust technique for interfacial investigation at molecular level. The performance of SFG-VS mostly depends on the spectral resolution of the SFG system. In this research, a simplified function was deduced to calculate the spectral resolution of picosecond SFG system and the lineshape of SFG spectra based on the Guassian shaped functions of IR beam and visible beam. The function indicates that the lineshpe of SFG spectra from nonresonant samples can be calculated by the Guassian widths of both IR beam and visible beam. And the Voigt lineshape of SFG spectra from vibrational resonant samples can be calculated by the Homogeneous broadening (Lorentzian width) and Inhomogeneous broadening (Guassian width) of vibrational modes, as well as the Guassian widths of both IR beam and visible beam. Such functions were also applied to verify the spectral resolution of the polarization-resolved and frequency-resolved picosecond SFG-VS system which was developed by our group recently. It is shown that the linewidths of IR beams that generated from current laser system are about 1.5 cm^-1. The calculated spectral resolution of current picosecond IR scanning SFG-VS system is about 4.6 cm^-1, which is consist with he spctral resolution shown in the spectra of cholesterol monolayer (3.5-5 cm^-1).     

Hydrogen bonds and molecular complexes in solutions of cellulose nitrate

Intermolecular hydrogen bonds in the systems based on cellulose nitrate and a number of low-molecular solvents were studied by IR spectroscopy. The majority of the systems under study are characterized only by redistribution of intensities of the spectral bands corresponding to the pure polymer accompanied by their minor shift. In this case, acceptors of cellulose nitrate become sterically accessible for the redistribution of hydrogen bonds, and only an insignificant portion of them forms hydrogen bonds with a solvent. New spectral bands in the IR spectra were observed only for solutions containing diethyldiphenyl carbamide, suggesting the formation of a molecular complex. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 484–487, March, 1999.     

Effect of thermal and acid treatment on the structure of NH4Na—Y zeolite by IR data

The structural transformations of ammonium-exchanged forms of Na-Y zeolite during thermal evacuation and acid treatment were studied using IR spectroscopy. The formation of the zeolite H-forms by shallow-bed evacuation of NH₄N-Y at 570 K is accompanied by a high-frequency shift of the bands in the IR lattice vibration spectra. In the formation of the H⁺-forms resulting from the decationization of zeolite by treatment with an aqueous HCl solution, no shifts of the bands are observed. During deep-bed calcination in air the H⁺-form, is transformed into the H-form completed by the formation of a highly-crystalline stabilized zeolite at 623 K. A rapid increase in the shallow-bed calcination temperature results in a collapse of the structure of the H- and H⁺-forms followed by the formation of amorphous SiO₂.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 236–240, February, 1995.     

丁基黄药在CuO表面吸附的二维连续在线原位ATR-FTIR光谱研究

运用连续在线原位衰减全反射傅里叶变换红外光谱(ATR-FTIR)技术测定了纳米CuO表面对丁基黄药的吸附行为. 在FTIR 谱图中发现有峰的红移现象,吸收峰由1200 cm^-1偏移到1193 cm^-1,用超纯去离子水脱附,峰强度只有微小的变化,可判断丁基黄药在CuO表面发生了很强的化学吸附. 通过对吸附行为进行二维(2D)红外光谱分析,分辨出吸附过程中光谱强度的变化顺序. 二维异步相关光谱测定结果表明,1265 cm^-1处振动吸收峰最先引起光谱强度的变化,1265 cm^-1处吸收峰可归因为表面反应生成的双黄药和黄药分子聚集体的复合峰. 根据1200 cm^-1处黄药特征吸收峰强度的变化,进行吸附动力学模拟,得出CuO对丁基黄药的最大吸附量为529 mg·g^-1,且吸附符合拟二级吸附动力学过程.     

Ordered structures of stereoregular poly(methyl meth-acrylates) in solutions studied by spectroscopic methods

Three groups of problems concerning ordered structures in solutions of stereoregular poly(methyl meth-acrylates) (PMMA) were studied by spectroscopic methods: (i) Self-aggregation of syndiotactic (s) PMMA in solution was followed by means of NMR and IR spectroscopy; it has been established that double helices are formed during the initial stage of aggregation, and activation and equilibrium thermodynamic parameters (ΔH, ΔS) which characterize the transition coil–double helix in s-PMMA were determined. (ii) NMR spectroscopy has demonstrated that association in solutions of atactic PMMA proceeds via interactions of stereocomplex type (interaction between m-diads and r-tetrads). (iii) It has been found that ¹³C CP/MAS NMR spectra of crystalline forms of PMMA (prepared from aggregated solutions by solvent evaporation) conform to the double-helix structure of these systems.     

Study of Photochemical Reactions of Coniferyl Alcohol. II. Comparative Structural Study of a Photochemical and Enzymatic Polymer of Coniferyl Alcohol

The structure of the polymer synthesized by UV irradiation of coniferyl alcohol was studied, using UV-visible, Raman, IR, H-NMR and ¹³C-NMR spectroscopy. The photochemical polymer was compared with the structure of the polymer obtained by peroxidase-catalyzed polymerization of coniferyl alcohol. General similarity of the spectra of the two polymers was shown. However, differences in the fine structure of particular regions of the NMR spectra, as well as in certain bands in the Raman and IR spectra, could be explained through the various bond types and organization within the polymers. These results are consistent with molecular mass distribution of the polymers. Two fractions of enzymatic polymer correspond to the main two fractions of photochemical polymer. The later polymer has additional fractions that are probably the main reason for the observed spectral differences.     

Aggregation of 2‐Aminobenzimidazole—A Combined Experimental and Theoretical Investigation

An investigation of 2‐aminobenzimidazole was carried out by calculations at HF, MP2, and DFT levels of theory and also by UV and IR spectroscopy. The quantum chemical calculations predict a full shift of the equilibrium towards the amino form, but the absorption spectra in different solvents distinctly show a two‐component equilibrium system. Examination of possible equilibria in solution shows that an equilibrium between two dimeric forms of the amino tautomer of 2‐aminobenzimidazole explains the spectral observations.     

IR spectroscopic investigations of amoxicillin trihydrate,included in the technological models sirup granules in ethylcellulose

Employing IR spectroscopy some technological models of amoxicillin trihydrate, included in ethyl-, methyl-, carboxymethyl- and methylhydroxyethyl-cellulose have been studied. Interactions were established only between amoxicillin trihydrate and ethylcellulose. The IR absorption spectra suggest a H-bonded antibiotic with hydroxyl groups in the ethylcellulose molecule. The IR spectral differences observed are not due to polymorphic transformation; this was proved by X-ray powder diffraction.     

A comparative vibrational and NMR study of cis-cinnamic acid polymorphs and trans-cinnamic acid

The IR and Raman spectra of the two polymorphic forms (58 degree- and 68 degree-forms) of cis-cinnamic acid were measured, and the spectral differences discussed on the basis of the crystal structures of the two forms. The IR bands related to the COOH group differ in the frequencies and band shape, reflecting differences in the hydrogen bonding between the two modifications. These spectra were compared with those of trans-cinnamic acid. The IR, Raman, and NMR spectra of the isotopic compounds, including the deuterated and 13C analogs of the cis and trans acids, were also recorded in the solid state and in solution to confirm the spectral assignments.     

Time‐Resolved FTIR Emission Spectroscopy of Transient Radicals

Fourier Transform spectroscopy with 10^?8 second time resolution for recording IR emission spectra has been developed as an efficient means for detecting previously unknown vibrational modes of transient radicals. 193 nm photodissociation of a precursor molecule is used to generate vibrationally excited radicals, from which IR emission is recorded with time and spectral resolution. Assignment of the spectra is performed using information obtained through multiple precursors, isotopic substitution, time dependence of emission intensity, theoretical calculations, and 2‐dimensional cross‐spectra correlation analysis. The radicals vinyl, cyanovinyl, and OCCN have been studied with many vibrational modes identified.     

Stabilities and Structures of Cu(II) Complexes with Linear Pentadentate Ligands by EPR Spectroscopy

The pH-dependent equilibria between Cu(II) and the potentially pentadentate ligands 4,7,10-triazatridecane-1,13-diamine (1) and 1,9bis(2-hydroxyphenyl)-2,5,8-triazanonane ( 2 ) have been studied in aq. solution at 298 K by EPR titration. Each ligand forms complexes CuLH_x (x=1,2,3) with strongly overlapping spectra. By using a recently developed algorithm, which does not need nay information with regard to the spectra of the species, stability constants and spectra were calculated from the EPR titration data. The anisotropic EPR spectra of the complexes were measured at 153 K and display axial or nearly axial symmetry (g∥ > g⊥) in each case. Based on the spectral parameters the assignment of the structures of the complexes was possible. With 1 and 2 the protonated complexes are equatorially coordinated, whereas in the fully deprotonated complexes an additional axial interaction occurs which is stronger with 2 than with 1 . The results of this study show that EPR spectroscopy is a useful method for investigating equilibrium systems of Cu²⁺ even in complicated cases where minor species occur and where the individual spectra are unknown and strongly overlapping.     

Clarification of the thermally-induced pretransition of ribonuclease A in solution by principal component analysis and two-dimensional correlation infrared spectroscopy

Thermal denaturation of ribonuclease A (RNase A) in D₂O solution is studied by Fourier transform infrared (FT-IR) spectroscopy. Sample–sample two-dimensional correlation (SS 2D) spectroscopy and principal component analysis (PCA) are applied to these spectral data to reveal the thermal kinetics of RNase A. The second scores plot of PCA constructed from temperature-dependent original IR spectra illustrates a pretransition at 46 °C as well as a clear main transition at 66 °C. The latter is revealed by the SS 2D correlation spectra and the first score of PCA because of their illustration of the main denaturation event of RNase A, while the former cannot. Therefore, the present study demonstrates the great potential of PCA in revealing subtle phase transition of proteins in aqueous solutions.     

Partial least squares modeling of combined infrared, H NMR and C NMR spectra to predict long residue properties of crude oils

Research has been carried out to determine the potential of partial least squares (PLS) modeling of mid-infrared (IR) spectra of crude oils combined with the corresponding ¹H and ¹³C nuclear magnetic resonance (NMR) data, to predict the long residue (LR) properties of these substances. The study elaborates further on a recently developed and patented method to predict this type of information from only IR spectra. In the present study, PLS modeling was carried out for 7 different LR properties, i.e., yield long-on-crude (YLC), density (D_LR), viscosity (V_LR), sulfur content (S), pour point (PP), asphaltenes (Asph) and carbon residue (CR). Research was based on the spectra of 48 crude oil samples of which 28 were used to build the PLS models and the remaining 20 for validation. For each property, PLS modeling was carried out on single type IR, ¹³C NMR and ¹H NMR spectra and on 3 sets of merged spectra, i.e., IR + ¹H NMR, IR + ¹³C NMR and IR + ¹H NMR + ¹³C NMR. The merged spectra were created by considering the NMR data as a scaled extension of the IR spectral region. In addition, PLS modeling of coupled spectra was performed after a Principal Component Analysis (PCA) of the IR, ¹³C NMR and ¹H NMR calibration sets. For these models, the 10 most relevant PCA scores of each set were concatenated and scaled prior to PLS modeling. The validation results of the individual IR models, expressed as root-mean-square-error-of-prediction (RMSEP) values, turned out to be slightly better than those obtained for the models using single input ¹³C NMR or ¹H NMR data. For the models based on IR spectra combined with NMR data, a significant improvement of the RMSEP values was not observed neither for the models based on merged spectra nor for those based on the PCA scores. It implies, that the commonly accepted complementary character of NMR and IR is, at least for the crude oil and bitumen samples under study, not reflected in the results of PLS modeling. Regarding these results, the absence of sample preparation and the straightforward way of data acquisition, IR spectroscopy is preferred over NMR for the prediction of LR properties of crude oils at site.     

FTIR spectroscopy study of the interaction between fibre of polyamide 6 and iodine

The IR spectra of several samples of polyamide 6 fibres treated with solutions of different concentrations of iodine and potassium iodide were studied. The IR spectra of their respective iodine desorptions, obtained by means of treatment with sodium thiosulphate, were also studied. The spectral changes observed are related to variations in the polymorphic crystalline α and γ forms of the polyamide, which demonstrate the formation of a complex between the tri-iodide ion and the polymer during the iodine sorption process and a structural change during desorption.     

Adsorption of ethyl xanthate anions on a silver electrode. An in-situ FTIR study

The adsorption of ethyl xanthatc ion (EX⁻) on a silver electrode in sodium sulphate, phosphate buffer (pH 6.8) and borate buffer (pH 9.2) solutions was studied in situ using Fourier transform IR reflection spectroscopy. The measurements were carried out using a thin-layer flow cell, which allows a continuous supply of the electroactive species into the thin layer. The voltammetric behaviour of the silver electrode in EX⁻-containing solution is characterized by the formation of silver ethyl xanthate (AgEX), which is preceded by a prewave due to chemisorption of ethyl xanthate. An IR band at 1220 cm ⁻¹, assigned to chemisorbed ethyl xanthate, was observed in spectra obtained in the chemisorption region. All IR bands characteristic of AgEX were observed in spectra of a silver electrode surface covered by a few monolayers of AgEX. The in-situ IR measurements also showed that the adsorption of EX⁻ starts directly on the positive side of the potential of zero charge of silver (−0.7 V/SHE).     

Beryllium(II) Complexes with Bis(dimethylamino)phosphorylfluoride: A Multinuclear NMR (31P, 19F,and 9Be) Characterization in Solution

Complexes of beryllium chloride and nitrate with (Me₂N)₂P(O)F were characterized in solution by multinuclear NMR spectroscopy and in some cases by IR spectroscopy and conductimetry. ³¹P and ¹⁹F NMR spectra were informative of changes associated with complex formation revealing resonances consistent with different species in solution and suggest an equilibrium between these species in both beryllium derivatives. These compounds show narrow lines in the solution ⁹Be NMR spectra, indicative of a highly symmetric environment for beryllium. The presence of the different species was more pronounced in beryllium chloride complexes. The results are compared to those reported in the literature for hexamethylphosphoramide (HMPA).     

Partial least squares modeling of combined infrared, 1H NMR and 13C NMR spectra to predict long residue properties of crude oils

Research has been carried out to determine the potential of partial least squares (PLS) modeling of mid-infrared (IR) spectra of crude oils combined with the corresponding ¹H and ¹³C nuclear magnetic resonance (NMR) data, to predict the long residue (LR) properties of these substances. The study elaborates further on a recently developed and patented method to predict this type of information from only IR spectra. In the present study, PLS modeling was carried out for 7 different LR properties, i.e., yield long-on-crude (YLC), density (D_LR), viscosity (V_LR), sulfur content (S), pour point (PP), asphaltenes (Asph) and carbon residue (CR). Research was based on the spectra of 48 crude oil samples of which 28 were used to build the PLS models and the remaining 20 for validation. For each property, PLS modeling was carried out on single type IR, ¹³C NMR and ¹H NMR spectra and on 3 sets of merged spectra, i.e., IR + ¹H NMR, IR + ¹³C NMR and IR + ¹H NMR + ¹³C NMR. The merged spectra were created by considering the NMR data as a scaled extension of the IR spectral region. In addition, PLS modeling of coupled spectra was performed after a Principal Component Analysis (PCA) of the IR, ¹³C NMR and ¹H NMR calibration sets. For these models, the 10 most relevant PCA scores of each set were concatenated and scaled prior to PLS modeling. The validation results of the individual IR models, expressed as root-mean-square-error-of-prediction (RMSEP) values, turned out to be slightly better than those obtained for the models using single input ¹³C NMR or ¹H NMR data. For the models based on IR spectra combined with NMR data, a significant improvement of the RMSEP values was not observed neither for the models based on merged spectra nor for those based on the PCA scores. It implies, that the commonly accepted complementary character of NMR and IR is, at least for the crude oil and bitumen samples under study, not reflected in the results of PLS modeling. Regarding these results, the absence of sample preparation and the straightforward way of data acquisition, IR spectroscopy is preferred over NMR for the prediction of LR properties of crude oils at site.