Synthesis of the TT pyrimidine (6-4) pyrimidone photoproduct-thio analogue phosphoramidite building block

The phosphoramidite building block synthesis of the thio analogue at the 5,6-dihydropyrimidine C5 position of the thymidylyl(3'-5')thymidine (6-4) photoproduct 1 is presented. This compound was readily obtained from the appropriately protected dinucleotide P-methyl-5'-O-dimethoxytritylthymidilyl(3' --> 5')-4-thiothymidine 2 after irradiation at 366 nm, then S-sulfenylmethylation of the thiol function of the resulting (6-4) adduct, and phosphitylation of the 3'-hydroxyl group.     

Theoretical study on the repair mechanism of the (6-4) photolesion by the (6-4) photolyase

UV irradiation of DNA can lead to the formation of mutagenic (6-4) pyrimidine-pyrimidone photolesions. The (6-4) photolyases are the enzymes responsible for the photoinduced repair of such lesions. On the basis of the recently published crystal structure of the (6-4) photolyase bound to DNA [Maul et al. 2008] and employing quantum mechanics/molecular mechanics techniques, a repair mechanism is proposed, which involves two photoexcitations. The flavin chromophore, initially being in its reduced anionic form, is photoexcited and donates an electron to the (6-4) form of the photolesion. The photolesion is then protonated by the neighboring histidine residue and forms a radical intermediate. The latter undergoes a series of energy stabilizing hydrogen-bonding rearrangements before the electron back transfer to the flavin semiquinone. The resulting structure corresponds to the oxetane intermediate, long thought to be formed upon DNA-enzyme binding. A second photoexcitation of the flavin promotes another electron transfer to the oxetane. Proton donation from the same histidine residue allows for the splitting of the four-membered ring, hence opening an efficient pathway to the final repaired form. The repair of the lesion by a single photoexcitation was shown not to be feasible.     

Ab initio study of the (5R)- and (5S)-TT pyrimidine h5(6-4) pyrimidone photoproducts. Implications on the design of new biologically relevant analogues

A computational study of a series of N(1)- and/or C(6)-alkyl-5,6-dihydrothymine diastereomers at theory levels up to MP4(SDTQ)/6-31G//HF/6-31G and MP2/6-311G//HF/6-31G has demonstrated the respective importance of the substituents at positions 1, 5, and 6 on the energetically favored conformation of each isomer. Results obtained both in the gas and condensed phase indicate that unsubstitution of the N(1)-position favors a half-chair conformation with the C(5) -and C(6)-substituents in the equatorial position. On the other hand, in the case of the (6S)-1,6-dimethyl-5,6-dihydrothymine, the C(6)-substituent adopts the axial position to minimize its van der Waals interactions with the N(1)-substituent. Furthermore, if the configuration at the C(5)-dihydrothymine position has no resultant influence on the total molecular free energy, when a pyrimidone substituent is introduced at the dihydrothymine C(6)-position, additional repulsive forces between the C(5)- and C(6)-substituents make the diaxially substituted half-chair conformation the most energetically favorable one. These results indicate that the observed C(6)-axially substituted conformation of the thymine-thymine pyrimidine h(5)(6-4) pyrimidone photoproducts is not necessarily induced by the macrocyclic structure. They also nicely explain the formation mechanism of these photoproduct derivatives, and allow the prediction of the conformation of new analogues.     

Synthesis and characterization of polyamides derived from (4-(4-(2, 6-diphenylpyridin-4yl)phenoxy)phenyl)-3, 5-diaminobezamide

New types of polyamides containing pendent triaryl pyridine groups were successfully synthesized by direct polycondensation of a symmetry diamine,（4-（4-（2,6-diphenylpyridin-4yl）phenoxy）phenyl）-3,5-diaminobezamide（DPDAB）, and various aromatic and aliphatic dicarboxylic diacids in NMP using triphenyl phosphate（TPP） and pyridine as catalyst. The diamine and all the prepared polyamides were fully characterized by using FT-IR,¹H-NMR,UV-Vis spectroscopy, fluorimetry and elemental analysis.The inherent viscosity of polyamides ranged from 0.45 dL/g to 0.68 dL/g.All the polymers exhibited solubility in common polar aprotic solvents such as NMP,DMAc,DMF,DMSO,pyridine,HMPA,and even in less polar solvents such as THF and m-cresol at room temperature.Thermal properties of polyamides were evaluated by means of DSC,DMTA and TGA.These polymers showed glass transition temperatures（T_g） in the range of 138-210℃. Their initial decomposition temperature（T_i） varied from 265℃to 310℃under N₂.The dilute solution（0.2 g/dL） of polyamides in DMF exhibited fluorescence emission withλ_max in the range of 470-550 nm.     

Co3(RL)2(hfac)6 ladder complex of 5-[4-(N-tert-butyl-N-aminoxyl)phenyl]pyrimidine

5-[4-(N-tert-butyl-N-aminoxyl)phenyl]pyridimine (4NITPhPyrim = RL) forms a 1-D ladder polymer complex with Co(hfac)2 of stoichiometry Co3(RL)2(hfac)6, having antiparallel [Co(II)RL]n linear chains (rails) that are cross-linked by Pyrim-Co(hfac)2-Pyrim rungs. The magnetic behavior above 100 K is consistent with contributions from one high-spin Co(II) ion (the cross-link, S = 3/2) plus two Co-ON units with strongly antiferromagnetic (AFM) metal-radical exchange (each S = 1). The chiT data show an AFM downturn as the temperature drops. Assuming weak exchange along chain portions of the polymer due to poor spin polarization across the phenyl-pyrimidine bond in RL, a linear three-spin (S = 1, 3/2, and 1) fit to the T > 18 K data yields an AFM cross-linker (rung) effective exchange of J(CL)/k = (-)5.3 K = (-)3.7 cm(-)(1). Superexchange (sigma-orbital overlap) is a likely mechanism for the effective AFM exchange between CoON and Co spin sites in the three-spin groupings.     

Synthesis and characterization of polystyrene/2-(5-chloro-2H-benzotriazole-2-yl)-6-(1,1- dimethylethyl)-4-methyl-phenol composite microspheres of narrow size distribution for UV irradiation protection

Polystyrene (PS) UV absorber microspheres of narrow size distribution have been prepared in two ways: (1) Entrapment of the UV absorber molecule, 2-(5-chloro-2H-benzotriazole-2-yl)-6-(1, 1-dimethylethyl)-4-methyl-phenol) [TINUVIN? 326] within uniform PS template microspheres by swelling these template particles with methylene chloride emulsion droplets containing the TINUVIN, followed by evaporation of the methylene chloride from the swollen PS microspheres. (2) A similar swelling process, substituting the methylene chloride emulsion droplets containing the TINUVIN for methylene chloride emulsion droplets containing the monomers, divinyl benzene (DVB) and styrene (S) and the initiator, benzoyl peroxide and TINUVIN. The monomers within the swollen microspheres were then polymerized by elevating the temperature of the swollen particles to 73?°C. The influence of the weight ratio [TINUVIN]/[PS] on the entrapped percentage of TINUVIN was elucidated. Polyethylene/TINUVIN, PE/(PS/TINUVIN), and PE/(PS/P(S-DVB-TINUVIN)) resins and films were prepared by melt blending of low-density PE with TINUVIN and with the UV absorber microspheres, followed by a tubular blown process. The UV absorption of these composite films was demonstrated. The leakage kinetics of the TINUVIN from these composite films was according to the following order: PE/(PS/P(S-DVB-TINUVIN))?<?PE/(PS/TINUVIN)?<?PE/TINUVIN.

Synthesis and liquid crystal properties of dinuclear cyclopalladated 5-alkyl-2-(4'-alkoxyphenyl)pyrimidine and 3-(4'-alkoxyphenyl)-6-alkoxypyridazine complexes

The dinuclear cyclopalladated complexes [Pd(L₁ or L₂)(µ-X)]₂ (HL₁=5-alkyl-2-(4'-alkoxyphenyl)pyrimidine, HL₂=3-(4'-alkoxyphenyl)-6-alkoxypyridazine, X=Cl^-, CH₂ClCOO^-, CH₂BrCOO^-, CH₃CHBrCOO^-, CH₂BrCH₂COO^-, CH₃COO^-) have been synthesized and characterized; their mesogenic properities were determined by DSC and polarizing microscopy. The effect of the bulk and the polarity of the bridging ligands on their mesogenic properties is discussed. The effect of the length of the alkyl chains on the mesogenic properties of these organometallic complexes has also been investigated.     

Synthesis,polarography and herbicidal activity of quaternary salts of 2-(4-pyridyl)-1,3,5-triazines, 5-(4-pyridyl)pyrimidine, 2-(4-pyridyl)pyrimidine and related compounds

2-(4-Pyridyl)-1,3,5-triazine, 2-(4-pyridyl)-4-methyl-1,3,5-triazine, 2-(4-pyridyl)-4,6-dimethyl-1,3,5-triazine and 2-(4-pyridyl)pyrimidine have been prepared by modification of established triazine and pyrimidine syntheses. These compounds and some of their relatives have been converted to quaternary pyridinium salts. The polarographic reduction potentials of the salts in aqueous solution are pH dependent. The activity of the salts as post-emergent herbicides is reported.     

Electrochemical synthesis of 6-amino-5-(3,4-dihydroxyphenyl) pyrimidine

Electrochemical oxidation of several catechols is studied in the presence of 4(6)-aminouracil (3a) and 6-amino-1,3-dimethyl uracil (3b) as nucleophiles in aqueous solution using cyclic voltammetry and controlled-potential coulometry. The results reveal that quinones derived from catechols participate in Michael additions with 3a and 3b to give the corresponding catecholamine derivatives via an electron transfer followed by chemical reaction (EC) mechanistic pathway in good yields and purities.     

4-甲胺基-6-三氟甲基-2-甲砜基嘧啶的合成及其晶体结构

以三氟乙酰乙酸乙酯和硫脲为原料,经环化、氯化和亲核取代反应制得中间体4-甲胺基-6-三氟甲基-2-甲硫基嘧啶(3); 以间氯过氧苯甲酸为氧化剂,3经氧化反应合成了新化合物--4-甲胺基-6-三氟甲基-2-甲砜基嘧啶(4),其结构经¹H NMR,MS,元素分析和X-射线单晶衍射表征。 4（CCDC：973037）属单斜晶系,空间群:P₂(1)/c,晶胞参数a=5.068 7(4) , b=15.296 8(11) , c=13.833 9(10) , β=13.833 9(10)°, V=1 065.81(14) ³, Z=4, Dc＝1.591 g·cm-³, μ=0.336 mm^-1, F(000)=520, R₁=0.051 1, wR₂=0.135 3。     

微波辐射快速合成2-(2＇-羟苯基)-5(6)取代苯并咪唑衍生物

苯并咪唑衍生物具有一定的抗病毒能力[1],一些苯并咪唑衍生物已用作农用抗植物病毒剂[2].一锅煮合成反应时间较长,产率中等[3,4].本文用取代邻苯二胺和水杨酸为原料,吡啶为溶剂,POCl3为催化剂,微波辐射法合成了标题化合物.     

Synthesis of Methyl 5(6)-(4-Aminophenoxy)- and 5(6)-(2-Aminophenoxy)-2-benzimidazolyl Carbamates and Their Biological Properties

A procedure was developed for preparation of methyl 5(6)-(4-aminophenoxy)- and 5(6)-(2-aminophenoxy)-2-benzimidazolyl carbamates by reaction of 3,4,4`-triaminodiphenyl or 3,4,2`-triaminodiphenyl ethers respectively with methyl cyanocarbamate in water solution in the presence of 7-10 molar excess of acetic acid. The helminthicidal properties, embryotoxicity, and overall toxicity of compounds obtained were estimated.     

Unexpected formation of 6-methyl-4-(5-methylfuran-2-yl)-2-ethylsulfanylpyridine-3-carbonitrile from 2-methyl-4-(5-methylfuran-2-yl)-N-o-tolyl-5-cyano-6-ethylsulfanyl-1,4-dihydropyridine-3-carboxamide

Russian Journal of Organic Chemistry -     

Pyridine and pyrimidine ring syntheses from 4-(4-morpholino)-3-pentenone and from ethyl 3-(4-morpholino)-2-butenoate

3-Substituted 2(1H)-pyridones are produced from reaction of 4-(4-morpholino)-3-pentenone 1 with each of the following carbon acids: cyanoacetamide, malononitrile, cyanothioacetamide, acetylacetamide, benzoyl-acetonitrile. Reaction of ethyl 3-(4-morpholino)-2-butenoate 2 with cyanoacetamide gives the corresponding hydroxypyridone. Pyrimidines are formed by reaction of 1 and of 2 with benzamidine and with S-benzylthio-urea; in the last case, the eliminated morpholine displaces the benzylthio group to give the final product.