Liquid chromatography ion trap mass spectrometric analysis of oligosaccharides using permethylated derivatives

Reversed phase liquid chromatography was combined with the multiple stage mass analysis capability of an ion trap mass spectrometer for the characterization of permethylated oligosaccharide mixtures. The new method was used to separate the components of an unlabeled permethylated maltooligomer ladder, a 2-aminobenzamide-labeled (2-AB) maltooligomer ladder, a complex mixture of 2AB-labeled bi- (B), tri- (T), and tetraantennary (Q) standards, and a mixture of recombinant glycoprotein carbohydrates from soluble CD4 with varying sialic acid (S) content. Using reversed phase HPLC, permethylated mixture components including alpha and beta anomers were separated based on their structures. Fluorescent labeling with 2-aminobenzamide prior to permethylation was employed for off-line method development, but was not necessarily required for mass spectral analysis, as permethylation alone improved the ionization and fragmentation characteristics of the molecules. Antennae composition of permethylated derivatives was determined in MS(2) where the fragmentation patterns of the Y- and B-ion series predominated, and then further evaluated in MS(3), which provided additional information on branching obtained from A and X cross-ring fragmentation.     

Application of time-of-flight secondary ion mass spectrometry to automobile paint analysis.

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) provides a method of elemental analysis that can distinguish among automotive paint samples of the same or nearly the same color. TOF-SIMS survey spectra were employed to determine the relative abundances of elements in the surface layers of the paint chips. The depth profile of paint samples permitted the analysis of small paint chips, the reproducible results for specific elements, and the identification of each car paint. Seventy-three samples of blue, red, white, and silver automobile paints from the major manufacturers in Korea were investigated using high resolution TOF-SIMS technique. It was found that paints of the same color produced by different manufacturers could be distinguished by this technique. TOF-SIMS is a reliable, nondestructive, and small area analyzing method for characterization of the elemental composition of automotive paint chips.     

Diethanolamine assisted secondary ion mass spectrometry of naturally occurring complex oligosaccharides

A remarkable technique for identifying the molecular weight of involatile and/or thermally unstable compounds by molecular secondary ion mass spectrometry is described. This technique uses diethanolamine as a matrix material instead of glycerol which is at present considered to be the best medium. When this amine is used, adduct ions [M+DEAH]⁺ are formed from neutral saccharides, and these are very stable for reliable molecular weight determination.     

Electrospray ionization ion trap mass spectrometry for structural characterization of oligosaccharides derivatized with 2-aminobenzamide

The use of electrospray ionization (ESI) quadrupole ion trap mass spectrometry and reversed-phase high-performance liquid chromatography (HPLC) for the characterization of 2-aminobenzamide (2AB)-labeled oligosaccharides and N-linked protein oligosaccharide mixtures is described. The major signals were obtained under these conditions from the [M+Na]+ ions for all 2AB-derivatized oligosaccharides. Under collision-induced dissociation, sodiated molecular species generated in the ESI mode yield simple and predictable mass spectra. Tandem mass spectrometry (MS/MS) experiments with orders higher than two offer a number of ways to enhance MS/MS spectra and to derive information not present in MS and MS2 spectra. Information on composition, sequence, branching and, to some extent, interglycosidic linkages can be deduced from fragments resulting from the cleavage of glycosidic bonds and from weak cross-ring cleavage products. Reversed-phase HPLC and derivatization by reductive amination using 2-aminobenzamide were finally applied to characterize a glycan pool enzymatically released from glycoproteins.     

Structural analysis of permethylated oligosaccharides using electrospray ionization quadrupole time-of-flight tandem mass spectrometry and deutero-reduction

Deutero-reduced permethylated oligosaccharides were analyzed by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS) using a hybrid quadrupole orthogonal acceleration time-of-flight mass spectrometer, fitted with a nanoflow ESI source. Under these ionization conditions such derivatives preferentially form sodiated molecular species in addition to protonated molecular species. Under collision-induced dissociation, protonated and sodiated molecular species yield simple and predictable fragment mass spectra. A systematic study was conducted on a series of deutero-reduced permethylated glycans to allow rationalization of the fragmentation processes. MS/MS spectra were characterized by fragments resulting from the cleavage of glycosidic bonds. These fragments originating from both the reducing and the non-reducing ends of the glycan yield information on sequence and branching. Furthermore, the substituent 3-linked to a HexNAc unit was readily eliminated. Special attention was devoted to a systematic study of fucosylated glycans. The fucosylated deutero-reduced permethylated glycans were submitted to an acidic hydrolysis, releasing specifically the fucosyl residues. The nascent free hydroxyl groups were subsequently CD3-labelled in order to determine the positions initially bearing the fucosyl residues along the oligosaccharide backbone. This methodology was finally applied to characterize a glycan pool enzymatically released from glycoproteins. The present data show that structural elucidation can be achieved at the 50 fmol level.     

Quantitative analysis of microstructures by secondary ion mass spectrometry.

The focus of this review is on trace-element quantitation of microstructures in solids. This review is aimed at the nonspecialist who wants to know how secondary ion mass spectrometry (SIMS) quantitation is achieved. Despite 35 years of SIMS research and applications, SIMS quantitation remains a fundamentally empirical enterprise and is based on standards. The most used standards are "bulk standards"-solids with a homogeneous distribution of a trace element-and ion-implanted solids. The SIMS systematics of bulk standards and ion-implanted solids are reviewed.     

Application of a liquid metal ion source to secondary ion mass spectrometry

Summary An indium liquid metal ion source has been incorporated in a quadrupole-based ion microprobe and its performance as a primary ion source for secondary ion mass spectrometry was evaluated. Secondary ion emission of pure elements was studied for 10 keV In⁺ and 10keV O ₂ ⁺ bombardment. For most of the elements investigated positive and negative secondary ion yields under In⁺ impact are comparable to those obtained with O ₂ ⁺ primary ions. In addition, depth profiles of a Ni/Cr multilayer sample (10 nm single-layer thickness), a shallow oxygen implant in silicon and oxide layers on niobium were obtained using In⁺ ions for sputter erosion. The results indicate that liquid metal ion sources can be applied successfully in secondary ion mass spectrometry.

---

Verwendung einer Flüssigmetall-Ionenquelle in der Sekundärionen-Massenspektrometrie

Zusammenfassung Eine Indium-Flüssigmetall-Ionenquelle wurde in eine Quadrupol-Ionensonde eingebaut und ihre Einsetzbarkeit als Primärstrahlquelle in der Sekundärionen-Massenspektrometrie geprüft. Die Sekundärionenemission von Reinelementen wurde für 10 keV In⁺- und 10 keV O ₂ ⁺ -Bombardement untersucht. Für die meisten Elemente sind die positiven und negativen Sekundärionenausbeuten unter In⁺-Beschuß vergleichbar mit jenen, die man mit O ₂ ⁺ Primärionen erhält. Weiterhin wurden Tiefenprofile an einem Ni/Cr-Vielschichtsystem (Dicke der einzelnen Schichten 10 nm), einem oberflächennahen O-Implantationsprofil in Si- und Oxidschichten auf Nb unter Verwendung von In⁺-Primärionen gemessen. Die Ergebnisse zeigen, daß Flüssigmetall-Ionenquellen erfolgreich in der Sekundärionen-Massenspektrometrie eingesetzt werden können.

     

Investigation of the ionization processes occurring in liquid-assisted secondary ion mass spectrometry of derivatized monosaccharides

Several derivatized monosaccharides, the 2-deoxy-D -ribofuranoses, have been studied by liquid-assisted secondary ion mass spectrometry (LSIMS) in order to gain insight into the factors affecting ionization in FAB/LSIMS. Examination of the mass spectra for these compounds obtained in eight liquid matrices (diethanolamine, ethylene glycol, glycerol, 2-hydroxyethyl disulfide, 2-hydroxyphenethyl alcohol, 3-nitrobenzyl alcohol, sulfolane and thioglycerol) reveals that in all cases the anomalous [M – H]⁺ ion is the predominant species in the molecular ion region and that [M + Na]⁺ species are observed in the presence of Na⁺. The analysis of these compounds by chemical ionization with ammonia shows [M + H]⁺ as the major species while [M – H]⁺ is essentially absent. This indicates that the ionization processes occurring in the two techniques are not analogous. Thermodynamic considerations based on the gas-phase hydride ion affinities of the protonated matrices do not support a predominant gas-phase mechanism for the formation of [M – H]⁺ in LSIMS. However, it is possible using solvation energies to rationalize the formation of [M – H]⁺ in terms of condensed-phase ionization processes which take place either in the liquid matrix or in the dense selvedge region immediately above the surface where extensive solvation is present. Electrospray data obtained for one of the derivatized monosaccharides indicates that the [M – H]⁺ is not performed in the condensed phase in LSIMS and that it is the product of fast ion beam-induced processes. While the nature of the matrix is seen to have little effect on the intensities of [M – H]⁺ and [M + H]⁺ it is observed to be an important factor for the intensity of M⁺˙ for one of the monosaccharides. This effect can be related to the electron-scavenging properties of the matrices and reinforces the hypothesis that condensed phase processes are significant in ionization.     

Introduction to time-of-flight secondary ion mass spectrometry application in chromatographic analysis

New on-line analytical system coupling thin layer chromatography (TLC) and high selective identification unit-time of flight secondary ion mass spectrometry (TOF-SIMS) is introduced in this article. Chromatographic mixture separation and analyte surface deposition followed with surface TOF-SIMS analysis on-line allows to identify the analytes at trace and ultratrace levels. The selected analytes with different detectability and identification possibility were analysed in this hyphenated unit (Methyl Red indicator, Terpinolen and Giberrelic acid). Here, the chromatographic thin layer plays a universal role: separation unit, analyte depositing surface and TOF-SIMS interface, finally. Two depositing substrates and TOF-SIMS compatible interfaces were tested in above-mentioned interfacing unit: modified aluminium backed chromatographic thin layer and monolithic silica thin layer. The sets of positive and negative ions TOF-SIMS spectra obtained from different SIMS modes of analysis were used for analyte identification purposes. SIMS enables analyte detection with high mass resolution at the concentration level that is not achieved by other methods.     

Surface analysis of polymer materials by secondary ion mass spectrometry

Atomic as well as molecular secondary ions are emitted from the uppermost monolayer of a solid during ion bombardment. Mass analysis of these positive and negative secondary ions supplies detailed information on the chemical composition of the bombarded surface. High mass range (> 10,000 u), high mass resolution (m/Δm > 10,000), accurate mass determination (ppm range) and high sensitivity (ppm of a monolayer) are achieved by applying time-of-flight (TOF) mass analyzers. TOF-SIMS has been successfully applied to a wide variety of polymer materials, including polymer blends, chemically or plasma modified surfaces, and plasma polymerization layers. Detailed information on the composition of repeat units, endgroups, oligomer distributions, additives, as well as surface contaminants can be obtained. Basic concepts of TOF-SIMS will be described and typical analytical examples for the characterization of polymer materials will be presented.     

Speciation analysis of oxides with static secondary ion mass spectrometry

Speciation analysis of inorganic solids, without dissolution of the sample, aims at specific molecular information. Two potentially useful microanalytical techniques emerge, namely, laser microprobe mass spectrometry (LMMS) and static secondary ion mass spectrometry (S-SIMS). This paper focuses on the molecular characterisation of oxides by application of the S-SIMS method. For this purpose, mass spectra of pure oxides were acquired under static conditions. Analytical parameters such as repeatability, accuracy and resolution were assessed. Also, the peak patterns in the mass spectra are discussed in connection with the older Plog model, describing the relative ion yield as a function of the cluster size. Finally, a comparison is made with the mass spectra from a S-SIMS library and with those obtained by Fourier transform LMMS. Copyright 1999 John Wiley & Sons, Ltd.     

Application of pattern recognition methods in secondary ion mass spectrometry

Pattern recognition methods were applied to SIMS spectra of aluminum and manganese borides to test if proper feature selection and distinction between the various compounds on the basis of the evaluation of cluster ions is possible. It was found that the features selected on an empirical basis could be reduced for practical application from 13 and 11 to 2–3 and 5–8 for aluminum borides and manganese borides, respectively, and that identification of the different compounds is possible by evaluation of the fragmentation pattern. Furthermore, there is evidence that this approach does not only work for pure compounds but also for specimens, where the interesting species is only a minor fraction in the analysed volume.     

Negative ion liquid secondary ion mass spectrometry of carbamate-linked oligodeoxynucleosides. II

Carbamate-linked Oligodeoxynucleosides, in which the backbone consists of carbamate and N-methylcarbamate linkages, have been analyzed by negative ion liquid secondary ion mass spectrometry. Bidirectional sequence-determining fragmentations are postulated to occur from a common radical anion intermediate that is produced by capture of an ionizing electron by the neutral sample molecule. Fragmentation reactions appear to be related to whether a proton or methyl group is present on the amide nitrogen.     

Reversed-phase ion-pairing liquid chromatography/ion trap mass spectrometry for the analysis of negatively charged,derivatized glycans

The significant complexity, similar polarity and lack of ionizable sites make the analysis of glycans an analytical challenge. These compounds are often derivatized and separated by normal-phase high-performance liquid chromatography (HPLC) or capillary electrophoresis (CE) followed by UV or fluorescence detection. Due to widespread use of reversed-phase chromatography coupled to electrospray mass spectrometry as an analytical tool, our laboratory has developed this methodology for the analysis of glycans derivatized with a negatively charged tag, 8-aminonaphthalene-1,3,6-trisulfonic acid (ANTS). It is possible to exploit the ability of this negatively charged tag to interact with a mobile phase ion-pairing reagent, allowing retention on a reversed-phase C(18) column for subsequent on-line UV or MS analysis. ANTS-derivatized samples, including a maltooligosaccharide ladder and glycans released from bovine ribonuclease B, bovine fetuin, and chicken ovalbumin, were analyzed using this method. In addition to reversed-phase retention, ribonuclease B and ovalbumin derivatives displayed highly desirable isomeric separation. With the use of mass spectrometric detection for glycan identity, this allowed relative quantitation of individual components.     

Time-of-flight secondary ion mass spectrometry analysis of hair from archaeological remains

Hair from four individuals excavated from burial sites in Pacatnamu, Peru from the Moche (450-800 AD) and Lambayeque (900-1100 AD) periods was sectioned longitudinally and analysed with time-of-flight secondary ion mass spectrometry (ToF-SIMS). An attempt was made to distinguish biogenic and diagenetic contributions to the elemental concentrations in the hair samples. Significant contamination was observed to have penetrated the hair samples from the burial environment. Results from the analyses indicate that the burial environment plays an important role in the postmortem variation in elemental content of hair samples. Various elements demonstrated an ability to permeate through the hair matrix over time. In addition, NaCl and what are believed to be aluminosilicates and mineral sulphates, were observed to have accumulated on the surface of the samples. Degradation of the samples was also suspected due to the presence of molecular fragments, possibly resulting from oxidation of the keratin proteins. The results should assist in the identification of reliable elemental signals in the analysis of ancient hair samples and promote caution when considering elements that are abundant in the burial environment.     

Application of secondary ion mass spectrometry (SIMS) for the analysis of asbestos fibers

Summary Secondary ion mass spectrometry (SIMS) was applied for the analysis of asbestos fibers. It was possible to identify the asbestos fibers by the pattern of the positive secondary ion mass spectrum. The image of the asbestos fibers was measurable by use of any major positive secondary ions. The smallest size of detectable asbestos fiber was about 5 and 1 m in length and diameter, respectively. Using a fast atom bombardment (FAB) source instead of primary ion beam, asbestos fibers collected on a membrane filter were easily detected without any pretreatment.     

Liquid secondary ion mass spectrometry of porphyrin dimers: reduction reactions and structural characterisation

New synthesised porphyrin dimers, with an amide or ester linkage between the two porphyrin units, were studied using liquid secondary ion mass spectrometry (LSIMS). The formation of reduced species was observed for all the compounds and it was found that the extent of reduction is dependent on the matrix used and on the structure of the porphyrin dimer. The main fragmentation pathways lead to monomer fragments resulting from cleavage of the amide or ester linkage between the two porphyrin units. The consistency of the fragmentations for all the dimers studied leads to the proposal of a common designation for the fragment ions. LSIMS, in addition to molecular weight determination, can provide important structural information for this type of compound.     

Structural analysis of secondary ions by post-source decay in time-of-flight secondary ion mass spectrometry

Tandem mass spectrometry measurements have been achieved using time-of-flight secondary ion mass spectrometry (TOF-SIMS) and a post source decay (PSD)-like method. The performance of the method has been demonstrated on model molecules with well-known fragmentation pathways. Several lipids have been fragmented including the phosphocholine ion, phosphatidylcholines, cholesterol and vitamin E. Pure samples were analyzed, and the results compared with those obtained with the same compounds on a quadrupole-TOF hybrid mass spectrometer. Then, the structures of some lipids which are currently observed in the TOF-SIMS imaging of mammalian tissue sections were verified.     

Capillary electrophoresis/electrospray ion trap mass spectrometry for the analysis of negatively charged derivatized and underivatized glycans.

The increasing interest in the development of glycoproteins for therapeutic purposes has created a greater demand for methods to characterize the sugar moieties bound to them. Traditionally, released carbohydrates are derivatized using such methods as permethylation or fluorescent tagging prior to analysis by high performance liquid chromatography (HPLC), capillary electrophoresis (CE), or direct infusion mass spectrometry. However, little research has been performed using CE with on-line mass spectrometry (MS) detection. The CE separation of neutral oligosaccharides requires the covalent attachment of a charged species for electrophoretic migration. Among charged labels which have shown promise in assisting CE and HPLC separation is the fluorophore 8-aminonaphthalene-1,3,6-trisulfonic acid (ANTS). This report describes the qualitative profiling of charged ANTS-derivatized and underivatized complex glycans by CE with on-line electrospray ion trap mass spectrometry. Several neutral standard glycans including a maltooligosaccharide ladder were derivatized with ANTS and subjected to CE/UV and CE/MS using low pH buffers consisting of citric and 6-aminocaproic acid salts. The ANTS-derivatized species were detected as negative ions, and multiple stage MS analysis provided valuable structural information. Fragment ions were easily identified, showing promise for the identification of unknowns. N-Linked glycans released from bovine fetuin were used to demonstrate the applicability of ANTS derivatization followed by CE/MS for the analysis of negatively charged glycans. Analyses were performed on both underivatized and ANTS-derivatized species, and sialylated glycans were separated and detected in both forms. The ability of the ion trap mass spectrometer to perform multiple stage analysis was exploited, with MS5 information obtained on selected glycans. This technique presents a complementary method to existing methodologies for the profiling of glycan mixtures.     

Liquid secondary ion mass spectrometry applied to structural confirmation of enzymically prepared C-terminal-truncated derivatives of recombinant hirudin

The thrombin-specific inhibitor, hirudin variant rHV2-Lys 47 (rHirudin), is a 65-amino acid polypeptide produced by recombinant DNA technology in yeast. Previous studies have shown that the acidic C-terminal segment of hirudin is susceptible to enzymic degradation. To address the question of C-terminal-truncated forms of the protein in terms of by-products or metabolites, well-defined reference compounds are needed. We prepared nine derivatives by carboxypeptidase Y digestion of rHirudin followed by a two-step chromatographic purification. Liquid secondary ion mass spectrometric measurements performed on peptides collected after reversed-phase high-performance liquid chromatography showed three pure forms (1-64, 1-63 and 1-56) and three mixtures of two forms each (1-62 + 1-61, 1-58 + 1-57 and 1-55 + 1-54), which were readily distinguished from one another by their mass spectra. Further purification of these co-eluted samples was achieved by ion-exchange chromatography and their structures were confirmed by liquid secondary ion mass spectrometry. Preliminary studies conducted on intact rHirudin indicated that this is an excellent analytical tool for mass measurements of hirudin-related proteins. Indeed, it allowed rapid (within 10-15 min), precise (0.50 a.m.u. relative to expected value), reproducible (mean MH+ = 6907.64 +/- 0.42 a.m.u.), sensitive (up to 500 ng, i.e. 72 pmol) and specific measurement of the quasi-molecular ion (MH+) of the protein, and was thus readily applicable to the analysis of several derivatives.