Excitation modes for fourier transform-ion cyclotron resonance mass spectrometry

Various geometric configurations for the excitation of coherent ion motion in Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR/MS) are analyzed (in some cases for the first time) with unified notation. The instantaneous power absorption, F v, in which v is ion velocity and F the force produced by the applied excitation electric field (harmonic, single frequency, on-resonance, in-phase), is time averaged and then set equal to the time rate of change of ion total (cyclotron + magnetron + trapping) energy, to yield a differential equation that is readily solved for the (time-dependent) amplitude of each of the various ion motions. The standard FT-ICR excitation (namely, radial dipolar) is reviewed. The effects of quadrature and radial quadrupolar excitation on ion radial (cyclotron and magnetron) motions are also reviewed. Frictional damping is shown to decrease the ion cyclotron orbital radius and trapping amplitude but increase the magnetron radius. Feedback excitation (i.e., excitation at the simultaneously detected ion cyclotron orbital frequency of the same ion packet) is introduced and analyzed as a means for exciting ions whose cyclotron frequency changes during excitation (as for relativistically shifted low-mass ions). In contrast to conventional radial dipolar excitation, axial dipolar excitation of the trapping motion leads to a mass-dependent ion motional amplitude. Parametric (i.e., axial quadrupolar) excitation is shown to produce an exponential increase in the ion motional amplitudes (hyperbolic sine and hyperbolic cosine amplitude for cyclotron and magnetron radii, respectively). More detailed consideration of parametric excitation leads to an optimal ion initial radial position in parametric-mode FT-ICRjMS.     

Frequency-sweep fourier transform ion cyclotron resonance spectroscopy

A single ion cyclotron resonance (ICR) absorption spectrum showing both CH⁺₃ and CH⁺₄ signals has been obtained by exciting both ion cyclotron resonances with a frequency-swept rf irradiation, followed by broad-band detection, digitization of the (time-domain) response, and finally discrete Fourier transformation to produce the (frequency-domain) spectrum. Pulsed-excitation Fourier transform ICR has demonstrated the use of broad-band detection in rapid generation of ICR spectra by Fourier transform methods; this paper demonstrates that frequency-sweep excitation can provide the broad-band irradiation required to excite ion cyclotron resonances throughout any desired mass range. It will thus be possible to obtain an ICR absorption spectrum of given mass range, signal-to-noise ratio, and resolution in an observation period which is two orders of magnitude shorter than that needed to obtain the same spectrum by conventional slow-sweep detection.     

High-frequency fourier transform ion cyclotron resonance mass spectrometry

The experimental Fourier transform ion cyclotron resonance (FT/ICR) frequency range has been extended to 107 MHz. We report the observation of FT/ICR signals from electron-ionized species of mass-to-charge ratio 8, 7, 6, 5, 4, 3, 2, and 1 μ per elementary charge. We show that moderately high charge states of atomic ions (e.g., N³⁺) are easily generated and detected. Several applications for high-frequency FT/ICR mass spectrometry are proposed and discussed.     

Milestones in fourier transform ion cyclotron resonance mass spectrometry technique development

The present range and power of Fourier transform ion cyclotron resonance mass spectrometry rest on a number of prior technique developments. In this article, selected developments in neutral/ion introduction, ionization methods, excitation/detection, ion trap configuration/operating modes, ion dissociation and MS/MS, ion cooling techniques, theory and data reduction are briefly explained and chronicled. Evidence for the value of these techniques is provided by a compilation of current world records for mass resolution, mass resolving power and mass accuracy. With these capabilities, it becomes possible to resolve and identify up to thousands of components of a complex mixture, often without prior wet chemical separation, thereby potentially changing the whole approach to dealing with chemical and biological complexity.     

Improved isotopic abundance measurements for high resolution fourier transform ion cyclotron resonance mass spectra via time-domain data extraction

The simultaneous high resolution and accurate mass measurements possible with Fourier transform ion cyclotron resonance mass spectrometry coupled with the gentle ionization of electrospray hold attractions for protein, peptide, and oligonucleotide characterization, including multistage-mass spectrometry measurements for assignment of fragment masses and greater confidence in structural measurements. The detection of cyclotron motion over extended periods of time (in some cases for several minutes) allows higher resolution and mass accuracy. Generally, signal duration has been considered to be limited primarily by background pressure, with ion-neutral collisions leading to the reduction and dephasing of cyclotron motion, causing signal loss. However, recent theoretical work has shown that the ion cloud stability that is a prerequisite for high performance measurements is highly dependent on the electric field generated by the ion cloud, thus giving rise to a minimum number of charges or ions required for extended time-domain signals. The effects of ion population on ion cloud stability and signal duration, and the subsequent effects on resolution and measured isotopic abundances are reported. Individual time-domain signals for bovine insulin isotopic peaks were extracted to allow a comparison of the damping rates for each of these ion clouds and the measured time-domain amplitude maxima are shown to provide a better match with the theoretically predicted isotopic abundances for insulin. These results show that different damping rates of ions of very similar mass, but different ion cloud population sizes, can have dramatic effects on the observed isotopic patterns. Additionally, more accurate, high resolution spectra can be produced by correcting for the effects of the different damping rates that are observed for different ion population sizes.     

In-cell matrix-assisted laser desorption-ionization fourier transform ion cyclotron resonance mass spectrometry

A new internal matrix-assisted laser desorption-ionization (MALDI) Fourier transform ion cyclotron resonance-mass spectrometry (FTICR-MS) method is introduced. The target is directly positioned at one trapping electrode of a single cylindrical ion cyclotron resonance (ICR) cell and becomes a part of it. The ionization occurs inside the ICR cell in contrast to external or near-cell MALDI-FTICR-MS techniques. Very efficient trapping and mass resolving power better than unit resolution of singly charged peptides and proteins ions up to 2000 u is possible by using only basic FTICR-MS techniques. The sole application of a pulsed retarding potential increases the mass range to 6000 u. No collisional cooling and quadrupolar excitation was done. Sensitivities below 1 fmol, and ion storage times of more than 15 s are shown. High resolving powers of 16,000 and 56,000 are obtained on bovine insulin (5.7 ku) and gramicidin D (1.9 ku), respectively.     

Quantitation of ion abundances in fourier transform ion cyclotron resonance mass spectrometry

To improve the analytical usefulness of Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS), an extensive survey of various methods for quantitation of peak magnitudes has been undertaken using a series of simulated transient response signals with varying signal-to-noise ratio. Both peak height (five methods) and peak area (four methods) were explored for a range of conditions to determine the optimum methodology for quantitation. Variables included dataset size, apodization function, damping constant, and zero filling. Based on the results obtained, recommended procedures for optimal quantitation include: apodization using a function appropriate for the peak height ratios observed in the spectrum (i.e., Hanning for ratios of about 1:10, three-term Blackman-Harris for ratios of ～1:100, or Kaiser-Bessel for ratios of ～1:1000); zero filling until the peaks of interest are represented by 10–15 points (generally obtained with one order of zero filling); and use of the polynomial y=(ax ²+bx+c) ⁿ and the three data points of highest intensity of the peak to locate the peak maximum, Y _max=(?b ²/4a+c) ⁿ . In this peak fitting procedure, which we have termed the “Comisarow method,” n is 5.5, 9.5, and 12.5 for the Hanning, three-term Blackman-Harris, and Kaiser-Bessel apodization functions, respectively. Accuracy of quantitation using an optimal peak height determination is about equal to that for peak area measurements. These recommendations were found to be valid when tested with real FTICR-MS spectra of xenon isotopes.     

Characterization of polyphosphoesters by fourier transform ion cyclotron resonance mass spectrometry

FT-ICR mass spectrometry, together with collision-induced dissociation and electron capture dissociation, has been used to characterize the polyphosphoester poly[1,4-bis(hydroxyethyl)terephthalate-alt-ethyloxyphosphate] and its degradation products. Three degradation pathways were elucidated: hydrolysis of the phosphate-[1,4-bis(hydroxyethyl)terephthalate] bonds; hydrolysis of the phosphate-ethoxy bonds; and hydrolysis of the ethyl-terephthalate bonds. The dominant degradation reactions were those that involved the phosphate groups. This work constitutes the first application of mass spectrometry to the characterization of polyphosphoesters and demonstrates the suitability of high mass accuracy FT-ICR mass spectrometry, with CID and ECD, for the structural analysis of polyphosphoesters and their degradation products.     

Electron capture dissociation implementation progress in fourier transform ion cyclotron resonance mass spectrometry

Successful electron capture dissociation (ECD) Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) applications to peptide and protein structural analysis have been enabled by constant progress in implementation of improved electron injection techniques. The rate of ECD product ion formation has been increased to match the liquid chromatography and capillary electrophoresis timescales, and ECD has been combined with infrared multiphoton dissociation in a single experimental configuration to provide simultaneous irradiation, fast switching between the two techniques, and good spatial overlap between ion, photon, and electron beams. Here we begin by describing advantages and disadvantages of the various existing electron injection techniques for ECD in FT-ICR MS. We next compare multiple-pass and single-pass ECD to provide better understanding of ECD efficiency at low and high negative cathode potentials. We introduce compressed hollow electron beam injection to optimize the overlap of ion, photon, and electron beams in the ICR ion trap. Finally, to overcome significant outgassing during operation of a powerful thermal cathode, we introduce nonthermal electron emitter-based electron injection. We describe the first results obtained with cold cathode ECD, and demonstrate a general way to obtain low-energy electrons in FT-ICR MS by use of multiple-pass ECD.     

Remeasurement at high resolving power in fourier transform ion cyclotron resonance mass spectrometry

The Fourier transform ion cyclotron resonance mass spectrometry remeasurement experiment is demonstrated and evaluated under high resolution conditions. Signal-to-noise enhancement is observed for isotopically resolved bovine insulin peaks at a resolution of ～ 31,000 (full width at half height). The experiment is sensitive to spacecharge effects and resultant changes in scan-to-scan signal-to-noise and resolution. Coulombic repulsion in the ion cloud during the high resolution remeasurement experiment can cause the cyclotron frequency to shift through the duration of the experiment, which results in broadened peak shapes when individual remeasurement spectra are coadded. By either reducing the number of ions in the cell or allowing the ion cloud to diffuse during the lifetime of the experiment, high resolution remeasurement spectra can be coadded without peak broadening or degradation of signal-to-noise ratio.     

Atmospheric pressure ionization permanent magnet fourier transform ion cyclotron resonance mass spectrometry

A new Fourier transform ion cyclotron resonance mass spectrometer based on a permanent magnet with an atmospheric pressure ionization source was designed and constructed. A mass resolving power (full-width-at-half-maximum) of up to 80,000 in the electron ionization mode and 25,000 in the electrospray mode was obtained. Also, a mass measurement accuracy at low-ppm level has been demonstrated for peptide mixtures in a mass range of up to 1200 m/z in the isotopically resolved mass spectra.     

A tandem mass spectrometry and Fourier transform-ion cyclotron resonance study of ionized ethylated acetone and deuterated analogs

The unimolecular dissociation of (CH₃)₂C⁺OC₂H₅ ions (I) and their deuterated analogs, generated by ion-molecule reactions (IMR) in acetone-ethyl iodide mixtures was studied by tandem mass Spectrometry methods. Two significant processes that yielded I ions were identified. The Fourier transform ion cyclotron resonance study showed that the reaction between ionized ethyl iodide and neutral acetone was the principal source of I. This process involved the formation of the stable mixed ionized dimer, [C₂H₅I^·O=C(CH₃)₂]^+· (II), which dissociated by the loss of an I atom. Other important fragmentation pathways of II were the formation of C₂H₅I^+·, (CH₃)₂CO^+·; and (CH₃)₂COI⁺ and the loss of CH₃CHI^·. The major dissociation of I was the loss of C₂H₄. The activation energy for this reaction was determined by metastable ion appearance energy measurements to be ～55 kJ mol^?1 above the thermochemical minimum. The analysis of the metastable and collision-induced dissociation of D-labeled I showed an unusual time-energy effect on the degree of H/D mixing, with the highest selectivity for the ethene loss [β-H(D)-atom shift] being observed for ions with the lowest internal energies. Collisional excitation could not produce significant H/D mixing among dissociating ions. The results were rationalized by the existence of two species— the classical (2-ethoxypropyl) and nonclassical (proton-bound acetone-ethene pair) isomers of I. The classical structure was originally formed by IMR or from II. The energy barrier for the classical to nonclassical isomerization lay well above the thermochemical threshold for C₂H₄ loss, providing only limited H-atom mixing in nonclassical ions that were always formed in their dissociative state. The effect of the proton affinity of the carbonyl compound on the H/D mixing in RR′C⁺OC₂H₅ ions was studied. It was shown that the selectivity for the ethene loss (β-H-atom shift) generally increased with the increase of the proton affinity of RR′CO. Neutralization-reionization mass spectrometry was applied to a study of (CH₃)₂C⁺OR ions, where R = H, I, C₂H₅. The observation of a recovery signal for the ion I was attributed to the formation of the 2-ethoxypropyl radical. Neutral counterparts of (CH₃)₂COI⁺ ions were also generated, being the first example of IO-substituted alkyl radicals.     

Ion cyclotron resonance excitatio/de-excitation: A basis for Stochastic fourier transform ion cyclotron mass spectrometry

Previous mass spectrometers based on the ion cyclotron resonance principle have employed continuous excitation (single-pulse or frequency-sweep), With detection during (frequency-sweep) or after (single-pulse or frequency sweep) the excitation. The present paper introduces an experiment in which an ion is first excited to a Larger orbit by continuous excitation, and then “de-excited” back to its starting point. The effect is demonstrated for the C₉F₂₀N⁺ peak (m/z = 502) in the Fourier transform ion cyclotron mass spectrum of perfluorotributylamine. By choosing which ion m/z ratios are “de-excited”, it should be possible to generate mass “windows” within which ions experience no net excitation. Potential applications of the method include the generation of an excitation with sharply defined “windows” or “steps”, with major advantages for MS/MS or multiple-ion-monitoring experiments.     

Theory of peak coalescence in Fourier transform ion cyclotron resonance mass spectrometry

Peak coalescence, i.e. the merging of two close peaks in a Fourier transform ion cyclotron resonance (FTICR) mass spectrum at a high number of ions, plays an important role in various FTICR experiments. In order to describe the coalescence phenomenon we would like to propose a new theory of motion for ion clouds with close mass‐to‐charge ratios, driven by a uniform magnetic field and Coulomb interactions between the clouds. We describe the motion of the ion clouds in terms of their averaged drift motion in crossed magnetic and electric fields. The ion clouds are considered to be of constant size and their motion is studied in two dimensions. The theory deals with the first‐order approximation of the equations of motion in relation to dm/m, where dm is the mass difference and m is the mass of a single ion. The analysis was done for an arbitrary inter‐cloud interaction potential, which makes it possible to analyze finite‐size ion clouds of any shape. The final analytical expression for the condition of the onset of coalescence is found for the case of uniformly charged spheres. An algorithm for finding this condition for an arbitrary interaction potential is proposed. The critical number of ions for the peak coalescence to take place is shown to depend quadratically on the magnetic field strength and to be proportional to the cyclotron radius and inversely proportional to the ion masses. Copyright © 2009 John Wiley & Sons, Ltd.     

Electrospray Lonization Fourier Transform Ion Cyclotron Resonance Mass Spectrometric Study on Sodium Azide Cluster Ions

Sodium azide has rarely been studied in gas phase or in the form of cluster ions and as a model of solid energetic substances and inorganic azide salt was ionized by electrospray ionization (ESI) and studied by high resolution Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry (MS) systematically. This paper highlights the effects of experimental conditions on the formation of salt cluster and the collision activation dissociation pathways of cluster ions to develop a microscopic understanding of inorganic azide salt clusters.     

A novel high-performance fourier transform ion cyclotron resonance cell for improved biopolymer characterization

A new trapped ion cell design for use with Fourier transform ion cyclotron resonance mass spectrometry is described. The design employs 15 cylindrical ring electrodes to generate trapping potential wells and 32 separately assignable rod electrodes for excitation and detection. The rod electrodes are positioned internal to the ring electrodes and provide excitation fields that are thereby linearized along the magnetic field over the entire trapped ion volume. The new design also affords flexibility in the shaping of the trapping field using the 15 ring electrodes. Many different trapping well shapes can be generated by applying different voltages to the individual ring electrodes, ranging from quadratic to linearly ramped along the magnetic field axis, to a shape that is nearly flat over the entire trap volume, but rises very steeply near the ends of the trap. This feature should be useful for trapping larger ion populations and extension of the useful range of ion manipulation and dissociation experiments since the number of stages of ion manipulation or dissociation is limited in practice by the initial trapped ion population size. Predicted trapping well shapes for two different ring electrode configurations are presented, and these and several other possible configurations are discussed, as are the predicted excitation fields based on the use of rod electrodes internal to the trapping ring electrodes. Initial results are presented from an implementation of the design using a 3.5 T superconducting magnet. It was found that ions can be successfully trapped and detected with this cell design and that selected ion accumulation can be performed with the utilization of four rods for quadrupolar excitation. The initial results presented here illustrate the feasibility of this cell design and demonstrate differences in observed performance based upon different trapping well shapes.     

High performance fourier transform ion cyclotron resonance mass spectrometric detection for capillary electrophoresis

We describe the current state of the on-line combination of capillary electrophoresis (CE) electrospray ionization (ESI) Fourier transform ion cyclotron resonance (FTICR) mass spectrometry (MS), and discuss aspects of the FTICR technique relevant to its use as a detection scheme for on-line separations. Aspects including sensitivity, mass resolution, duty cycle, and tandem mass spectrometric capabilities are discussed in the context of online separations with examples from the authors' laboratory.     

Fullerenes from kerogen by laser ablation fourier transform ion cyclotron resonance mass spectrometry

Raw oil shale, kerogen (demineralized shale) and carbonaceous residues from kerogen pyrolysis in the range 350–700°C (at 50°C intervals) were studied by laser ablation Fourier transform ion cyclotron resonance mass spectrometry using the fundamental frequency of Nd: YAG laser (1064 nm). Normally, pyrolysis of the raw materials produces oil and the resulting residues have decreased hydrogen to carbon ratios and exhibit relative increases in aromatic carbons. Raw shale and kerogen give positive-ion spectra with mainly protonated species of m/z 100–400. Laser ablation positive-ion mass spectra of the pyrolysis products of the kerogen show the presence of C₆₀, C₇₀ and other fullerene ions with a distribution of higher mass fullerene ions up to m/z 4000. Using high laser powers (100–3000 MW cm^?2), the residue from pyrolysis at 350°C initially did not produce any fullerene ions (apart from traces of C₆₀ and C₇₀), but after continued ablation a cavity was formed in the target and a wide distribution of fullerene ions was obtained with subsequent laser pulses. Residues obtained from the pyrolysis of kerogen at 400–500°C produced fullerene ions at both low (4–200 kW cm^?2) and high laser powers. The 550°C pyrolysis residue gave only small amounts of C₆₀ and C₇₀ positive ions at low laser power whereas residues from the pyrolysis of kerogen above 550°C did not give fullerene ions over a wide range of laser powers. It is proposed from the above results that the changes in the aromatic nature of the kerogen residues with increasing pyrolysis temperature are directly related to the ease of fullerene formation. This is possibly due to the formation of large polycyclic aromatic systems at pyrolysis temperatures above 400°C, formed in the residues. It should be noted that the shale samples (raw or pyrolysed) did not generate fullerene ions under any of the conditions employed in these experiments.     

Structural validation of saccharomicins by high resolution and high mass accuracy fourier transform-ion cyclotron resonance-mass spectrometry and infrared multiphoton dissociation tandem mass spectrometry

Exceptionally high mass resolving power and mass accuracy combined with tandem mass spectrometry (MSⁿ) capability make Fourier transform ion cyclotron resonance mass spectrometry a powerful tool for structure verification and determination of biological macromolecules. By means of local internal calibration and electron mass correction, mass accuracy better than ±0.5 ppm was achieved for two oligosaccharide antibiotics, Saccharomicins A and B, consistent with the proposed elemental compositions based upon NMR data. High resolution and high mass accuracy MS/MS data were obtained for both oligosaccharides by use of infrared multiphoton dissociation (IRMPD) with a 40 W continuous-wave CO₂ laser. The spectra were charge-state deconvolved by the “Z-score” algorithm to yield much simpler mass-only spectra. Sequences of 15 sugar residues could be confirmed from the charge state deconvolved accurate mass MS/MS spectra for Saccharomicins A and B, even without use of traditional prior permethylation. A fragment corresponding to an internal sugar loss rearrangement was observed by IRMPD and studied by collision activated dissociation MS⁴.