6‐Aza‐2′‐deoxy­uridine and N3‐anisoyl‐6‐aza‐2′‐deoxy­uridine

In 2‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐1,2,4‐triazine‐3,5(2H,4H)‐dione (6‐aza‐2′‐deoxy­uridine), C₈H₁₁N₃O₅, (I), the conformation of the glycosylic bond is between anti and high‐anti [χ = −94.0 (3)°], whereas the derivative 2‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐N⁴‐(2‐methoxy­benzoyl)‐1,2,4‐triazine‐3,5(2H,4H)‐dione (N³‐anisoyl‐6‐aza‐2′‐deoxy­uridine), C₁₆H₁₇N₃O₇, (II), displays a high‐anti conformation [χ = −86.4 (3)°]. The furanosyl moiety in (I) adopts the S‐type sugar pucker (²T₃), with P = 188.1 (2)° and τ_m = 40.3 (2)°, while the sugar pucker in (II) is N (³T₄), with P = 36.1 (3)° and τ_m = 33.5 (2)°. The crystal structures of (I) and (II) are stabilized by inter­molecular N—H⋯O and O—H⋯O inter­actions.     

The α‐d anomer of 5‐aza‐7‐deaza‐2′‐deoxyguanosine

In the monohydrate of 2‐amino‐8‐(2‐deoxy‐α‐d ‐erythro‐pento­furan­osyl)‐8H‐imidazo­[1,2‐a]­[1,3,5]­triazin‐4‐one, C₁₀H₁₃N₅O₄·H₂O, denoted (I) or αZ_d, the conformation of the N‐gly­cosyl­ic bond is in the high‐anti range [χ = 87.5 (3)°]. The 2′‐deoxy­ribo­furan­ose moiety adopts a C2′‐endo,C3′‐exo(^2′T_3′) sugar puckering (S‐type sugar) and the conformation at the C4′—C5′ bond is ?sc (trans).     

Di‐μ‐sulfito‐bis­[(4,4′‐di­methyl‐2,2′‐bi­pyridine)­zinc(II)] dihydrate and poly­[[aqua(1,10‐phenanthroline)­zinc(II)]‐μ3‐sulfito‐zinc(II)‐μ3‐sulfito]

Two different zinc sulfite compounds have been prepared through the decomposition of pyrosulfite–­di­thionite ions in aqueous solution, viz. a dimeric complex, di‐μ‐sulfito‐κ³O,O′:O′′;κ³O:O′,O′′‐bis­[(4,4′‐di­methyl‐2,2′‐bi­pyridine‐κ²N,N′)­zinc(II)] dihydrate, [Zn₂(SO₃)₂(C₁₂H₁₂N₂)₂]·2H₂O, (I), which was solved and refined from a twinned sample, and an extended polymer, poly­[[aqua(1,10‐phenanthroline‐κ²N,N′)­zinc(II)]‐μ₃‐sulfito‐κ²O:O′:O′′‐zinc(II)‐μ₃‐sulfito‐κ³O:O:O′], [Zn₂(SO₃)₂(C₁₂H₁₀N₂)(H₂O)]_n, (II). In (I), the dinuclear Zn^II complex has a center of symmetry. The cation is five‐coordinate in a square‐pyramidal arrangement, the anion fulfilling a bridging chelating role. Compound (II) comprises two different zinc units, one being five‐coordinate (square pyramidal) and the other four‐coordinate (trigonal pyramidal), and two independent sulfite groups with different binding modes to the cationic centers.     

μ‐{N,N′‐Bis[2‐(dimethyl­amino)ethyl]oxamidato(2–)}‐1κ2O,O′:2κ4N,N′,N′′,N′′′‐bis­(4,4′‐dimethyl‐2,2′‐bipyridine‐1κ2N,N′)dinickel(II) bis­(perchlorate)

In the crystal structure of the title complex, [Ni₂(C₁₀H₂₀N₄O₂)(C₁₂H₁₂N₂)₂](ClO₄)₂ or [Ni(dmaeoxd)Ni(dmbp)₂](ClO₄)₂ {H₂dmaeoxd is N,N′‐bis­[2‐(dimethyl­amino)ethyl]oxamide and dmbp is 4,4′‐dimethyl‐2,2′‐bipyridine}, the deprotonated dmaeoxd²⁻ ligand is in a cis conformation and bridges two Ni^II atoms, one of which is located in a slightly distorted square‐planar environment, while the other is in an irregular octa­hedral environment. The cation is located on a twofold symmetry axis running through both Ni atoms. The dmaeoxd²⁻ ligands inter­act with each other via C—H⋯O hydrogen bonds and π–π inter­actions, which results in an extended chain along the c axis.     

(3R*,3′R*)‐1,1′‐Dimethyl‐3,3′‐biindoline‐2,2′‐dithione

The (3R*,3′R*) configuration of the title compound, C₁₈H₁₆N₂S₂, (I), has been unambiguously elucidated by X‐­ray analysis. Mol­ecules of (I) have C₂ symmetry to a good approximation and a strongly folded shape. The interplanar angle between the two halves of a mol­ecule is 67.11 (6)°.     

N1‐(4‐tert‐Butyl­phenyl)‐N2‐hydroxy‐α‐oxo‐α‐phenyl­acet­amidine and N2‐hydroxy‐N1‐(4‐nitro­phenyl)‐α‐oxo‐α‐phenyl­acet­amidine hemihydrate

In the title compounds, C₁₈H₂₀N₂O₂, (I), and C₁₄H₁₁N₃O₄·0.5H₂O, (II), respectively, the oxime groups have an E configuration. In (I), the mol­ecules exist as polymers bound by intermolecular C—H⋯O and O—H⋯N hydrogen bonds around inversion centres. In (II), intermolecular OW—H⋯N, OW—H⋯O and O—H⋯OW interactions stabilize the molecular packing.     

One‐dimensional CuII coordination polymers containing C2h‐symmetric 1,1′:4′,1′′‐terphenyl‐3,3′‐dicarboxylate linkers

Two new one‐dimensional Cu^II coordination polymers (CPs) containing the C_2h‐symmetric terphenyl‐based dicarboxylate linker 1,1′:4′,1′′‐terphenyl‐3,3′‐dicarboxylate (3,3′‐TPDC), namely catena‐poly[[bis(dimethylamine‐κN)copper(II)]‐μ‐1,1′:4′,1′′‐terphenyl‐3,3′‐dicarboxylato‐κ⁴O,O′:O′′:O′′′] monohydrate], {[Cu(C₂₀H₁₂O₄)(C₂H₇N)₂]·H₂O}_n, (I), and catena‐poly[[aquabis(dimethylamine‐κN)copper(II)]‐μ‐1,1′:4′,1′′‐terphenyl‐3,3′‐dicarboxylato‐κ²O³:O^3′] monohydrate], {[Cu(C₂₀H₁₂O₄)(C₂H₇N)₂(H₂O)]·H₂O}_n, (II), were both obtained from two different methods of preparation: one reaction was performed in the presence of 1,4‐diazabicyclo[2.2.2]octane (DABCO) as a potential pillar ligand and the other was carried out in the absence of the DABCO pillar. Both reactions afforded crystals of different colours, i.e. violet plates for (I) and blue needles for (II), both of which were analysed by X‐ray crystallography. The 3,3′‐TPDC bridging ligands coordinate the Cu^II ions in asymmetric chelating modes in (I) and in monodenate binding modes in (II), forming one‐dimensional chains in each case. Both coordination polymers contain two coordinated dimethylamine ligands in mutually trans positions, and there is an additional aqua ligand in (II). The solvent water molecules are involved in hydrogen bonds between the one‐dimensional coordination polymer chains, forming a two‐dimensional network in (I) and a three‐dimensional network in (II).     

4,4′‐Bis(2,2,2‐trifluoroethoxymethyl)‐2,2′‐bipyridine

As part of a homologous series of novel polyfluorinated bipyridyl (bpy) ligands, the title compound, C₁₆H₁₄F₆N₂O₂, contains the smallest fluorinated group, viz. CF₃. The molecule resides on a crystallographic inversion centre at the mid‐point of the pyridine C_ipso—C_ipso bond. Therefore, the bpy skeleton lies in an anti conformation to avoid repulsion between the two pyridyl N atoms. Weak intramolecular C—H...N and C—H...O interactions are observed, similar to those in related polyfluorinated bpy–metal complexes. A π–π interaction is observed between the bpy rings of adjacent molecules and this is probably a primary driving force in crystallization. Weak intermolecular C—H...N hydrogen bonding is present between one of the CF₃CH₂– methylene H atoms and a pyridyl N atom related by translation along the [010] direction, in addition to weak benzyl‐type C—H...F interactions to atoms of the terminal CF₃ group. It is of note that the O—CH₂CF₃ bond is almost perpendicular to the bpy plane.     

A series of substituted (2E)‐3‐(2‐fluoro‐4‐phenoxyphenyl)‐1‐phenylprop‐2‐en‐1‐ones

In the molecular structures of a series of substituted chalcones, namely (2E)‐3‐(2‐fluoro‐4‐phenoxyphenyl)‐1‐phenylprop‐2‐en‐1‐one, C₂₁H₁₅FO₂, (I), (2E)‐3‐(2‐fluoro‐4‐phenoxyphenyl)‐1‐(4‐fluorophenyl)prop‐2‐en‐1‐one, C₂₁H₁₄F₂O₂, (II), (2E)‐1‐(4‐chlorophenyl)‐3‐(2‐fluoro‐4‐phenoxyphenyl)prop‐2‐en‐1‐one, C₂₁H₁₄ClFO₂, (III), (2E)‐3‐(2‐fluoro‐4‐phenoxyphenyl)‐1‐(4‐methylphenyl)prop‐2‐en‐1‐one, C₂₂H₁₇FO₂, (IV), and (2E)‐3‐(2‐fluoro‐4‐phenoxyphenyl)‐1‐(4‐methoxyphenyl)prop‐2‐en‐1‐one, C₂₂H₁₇FO₃, (V), the configuration of the keto group with respect to the olefinic double bond is s‐cis. The molecules pack utilizing weak C—H...O and C—H...π intermolecular contacts. Identical packing motifs involving C—H...O interactions, forming both chains and dimers, along with C—H...π dimers and π–π aromatic interactions are observed in the fluoro, chloro and methyl derivatives.     

Bis[μ3‐cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidato(3–)]bis(2,2′‐bipyridine)dichloridotetracopper(II) dihydrate

The title complex, bis[μ₃‐cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidato(3−)]‐1:2:4κ⁷N,N′,N′′,O:O′,O′′:O′′′;2:3:4κ⁷O′′′:N,N′,N′′,O:O′,O′′‐bis(2,2′‐bipyridine)‐2κ²N,N′;4κ²N,N′‐dichlorido‐1κCl,3κCl‐tetracopper(II) dihydrate, [Cu₄(C₁₂H₁₂N₃O₄)₂Cl₂(C₁₀H₈N₂)₂]·2H₂O, consists of a neutral cyclic tetracopper(II) system having an embedded centre of inversion and two solvent water molecules. The coordination of each Cu^II atom is square‐pyramidal. The separations of Cu^II atoms bridged by cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidate(3−) and carboxyl groups are 5.2096 (4) and 5.1961 (5) Å, respectively. A three‐dimensional supramolecular structure involving hydrogen bonding and aromatic stacking is observed.     

Variationen modulo 4–4+, 4+3–3+4–, 4–5+, 5–4+4–5+4–4+ bei Seltenerdcarbidhalogeniden

The new compounds Pr₈(C₂)₄Cl₅ (1), Pr₁₄(C₂)₇Cl₉ (2), Pr₂₂(C₂)₁₁Cl₁₄ (3), Ce₂(C₂)Cl (4), La₂(C₂)Br (5), Ce₂(C₂)Br (6), Pr₂(C₂)Br (7), Ce₁₈(C₂)₉Cl₁₁ (8), and Ce₂₆(C₂)₁₃Cl₁₆ (9) were prepared by heating mixtures of LnX₃, Ln and carbon or in an alternatively way LnX₃, and “Ln₂C_3–x” in appropriate amounts for several days between 750 and 1200 °C. The crystal structures were investigated by X‐ray powder analysis (5–7) and/or single crystal diffraction (1–4, 8, 9). Pr₈(C₂)₄Cl₅ crystallizes in space group P2₁/c with the lattice parameters a = 7.6169(12), b = 16.689(2), c = 6.7688(2) Å, β = 103.94(1) °, Pr₁₄(C₂)₇Cl₉ in Pc with a = 7.6134(15), b = 29.432(6), c = 6.7705(14) Å, β = 104.00(3) °, Pr₂₂(C₂)₁₁Cl₁₄ in P2₁/c with a = 7.612(2), b = 46.127(9), c = 6.761(1) Å, β = 103.92(3) °, Ce₂(C₂)₂Cl in C2/c with a = 14.573(3), b = 4.129(1), c = 6.696(1) Å, β = 101.37(3) °, La₂(C₂)₂Br in C2/c with a = 15.313(5), b = 4.193(2), c = 6.842(2) Å, β = 100.53(3) °, Ce₂(C₂)₂Br in C2/c with a = 15.120(3), b = 4.179(1), c = 6.743(2) Å, β = 101.09(3) °, Pr₂(C₂)₂Br in C2/c with a = 15.054(5), b = 4.139(1), c = 6.713(3) Å, β = 101.08(3) °, Ce₁₈(C₂)₉Cl₁₁ in P$\bar{1}$ with a = 6.7705(14), b = 7.6573(15), c = 18.980(4) Å,α = 88.90(3) °, β = 80.32(3) °, γ = 76.09(3) °, and Ce₂₆(C₂)₁₃Cl₁₆ in P2₁/c with a = 7.6644(15), b = 54.249(11), c = 6.7956(14) Å, β = 103.98(3) ° The crystal structures are composed of Ln octahedra centered by C₂ dumbbells. Such Ln₆(C₂)‐octahedra are condensed into chains which are joined into undulated sheets. In compounds 1–4 three and four up and down inclined ribbons alternate (4₊4_–, 4₊3_–3₊4_–, 4₊4_–3₊4_–4₊3_–), in compounds 8 and 9 four and five (4₊5_–, 5₊4_–4₊5_–4₊4_–), and in compounds 4–7 one, one ribbons (1₊1_–) are present. The Ln‐(C₂)‐Ln layers are separated by monolayers of X atoms.     

Poly[μ2‐4‐aminobenzoato‐aqua‐μ2‐nitrato‐zinc]

In the title compound, [Zn(C₇H₆NO₂)(NO₃)(H₂O)]_n, the Zn atom is coordinated by two nitrate ions, one aqua molecule and two 4‐aminobenzoate ions in a distorted octahedral geometry. The structure of the compound exhibits a two‐dimensional layer, which is formed by the interconnection of [Zn(C₇H₆NO₂)(H₂O)]_n chains viaμ₂‐nitrate bridges or by the interconnection of [Zn(NO₃)(H₂O)]_n chains viaμ₂‐4‐aminobenzoate bridges.     

5‐Methyl‐6‐aza‐2′‐deoxy­isocytidine

In the title compound, 3‐amino‐2‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐6‐methyl‐1,2,4‐triazin‐5(2H)‐one, C₉H₁₄N₄O₄, the conformation of the N‐glycosidic bond is high‐anti and the 2‐deoxy­ribo­furan­osyl moiety adopts a North sugar pucker (²T₃). The orientation of the exocyclic C—C bond between the –CH₂OH group and the five‐membered ring is ap (gauche, trans). The crystal packing is such that the nucleobases lie parallel to the ac plane; the planes are connected via hydrogen bonds involving the five‐membered ring.     

1‐(2‐Cyclohex‐2‐enylpropionyl)‐3‐methylurea, 2‐ethyl‐5‐methylhexanamide and 2‐ethylpentanamide: three products of barbiturate decomposition

The three title compounds were obtained by reactions which mimic, with more extreme conditions, the in vivo metabolism of barbiturates. 1‐(2‐Cyclohex‐2‐enylpropionyl)‐3‐methylurea, C₁₁H₁₈N₂O₂, (I), and 2‐ethylpentanamide, C₈H₁₇NO, (III), both crystallize with two unique molecules in the asymmetric unit; in the case of (III), one unique molecule exhibits whole‐molecule disorder. 2‐Ethyl‐5‐methylhexanamide, C₉H₁₉NO, (II), crystallizes as a fully ordered molecule with Z′ = 1. In the crystal structures, three different hydrogen‐bonding motifs are observed: in (I) a combination of R₂²(4) and R₂²(8) motifs, and in (II) and (III) a combination of R₄²(8) and R₂²(8) motifs. In all three structures, one‐dimensional ribbons are formed by N—H...O hydrogen‐bonding interactions.     

Polymorphism of 2,5‐[(diphenylphosphanyl)methyl]‐1,1,2,4,4,5‐hexaphenyl‐1,4‐diphospha‐2,5‐diboracyclohexane

2,5‐[(Diphenylphosphanyl)methyl]‐1,1,2,4,4,5‐hexaphenyl‐1,4‐diphospha‐2,5‐diboracyclohexane shows polymorphism as two tetrahydrofuran (THF) disolvates [C₆₄H₅₈B₂P₄·2C₄H₈O, (Ia) and (Ib)] and pseudo‐polymorphism as its toluene monosolvate [C₆₄H₅₈B₂P₄·C₇H₈, (Ic)]. In each of polymorphs (Ia) and (Ib), the diphosphadiboracyclohexane molecule is located on a centre of inversion. The THF molecule of (Ib) is disordered over two sites, with a site‐occupation factor of 0.612 (8) for the major‐occupied site. Both structures crystallize in the same space group (P2₁/n), but they display a different crystal packing. For pseudo‐polymorph (Ic), although the space group is P2₁/c, which is just a different setting of the P2₁/n space group of (Ia) and (Ib), the crystal packing is completely different. Although the crystal packing in these three structures is significantly different, their molecular conformations are surprisingly the same.     

Tetra‐μ‐2‐fluoro­benzoato‐bis[aqua(4,4′‐bi­pyridine)(2‐fluorobenzoato)lanthanum(III)]

Each La³⁺ ion in the title complex, tetra‐μ‐2‐fluorobenzoato‐κ¹⁰O:O′;O:O,O′;O:O′;O,O′:O′‐bis[aqua(4,4′‐bipy­ridine‐κN)(2‐fluorobenzoato‐κO)lanthanum(II)], [La(C₇H₄FO₂)₆(C₁₀H₈N₂)₂(H₂O)₂], is coordinated by six O atoms from the carboxyl­ate groups of five 2‐fluoro­benzoate ligands, one O atom from a water mol­ecule and one N atom from a 4,4′‐bi­pyridine mol­ecule, thus forming a dimeric mol­ecule. An infinite one‐dimensional dimeric supramolecular chain is formed via intermolecular hydrogen bonds.     

From small structural modifications to adjustment of structurally dependent properties: 1‐methyl‐3,5‐bis[(E)‐2‐thienylidene]‐4‐piperidone and 3,5‐bis[(E)‐5‐bromo‐2‐thienylidene]‐1‐methyl‐4‐piperidone

The molecules of the title compounds, C₁₆H₁₅NOS₂, (I), and C₁₆H₁₃Br₂NOS₂, (II), are E,E‐isomers and consist of an extensive conjugated system, which determines their molecular geometries. Compound (I) crystallizes in the monoclinic space group P2₁/c. It has one thiophene ring disordered over two positions, with a minor component contribution of 0.100 (3). Compound (II) crystallizes in the noncentrosymmetric orthorhombic space group Pca2₁ with two independent molecules in the unit cell. These molecules are related by a noncrystallographic pseudo‐inversion center and possess very similar geometries. The crystal packings of (I) and (II) have a topologically common structural motif, viz. stacks along the b axis, in which the molecules are bound by weak C—H...O hydrogen bonds. The noncentrosymmetric packing of (II) is governed by attractive intermolecular Br...Br and Br...N interactions, which are also responsible for the very high density of (II) (1.861 Mg m⁻³).     

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile, C₁₅H₁₀N₂S, (I), and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile, C₂₆H₂₄N₂S, (II), were prepared by base‐catalyzed reactions of the corresponding indole‐3‐carbox­aldehyde with thio­phene‐3‐aceto­nitrile. ¹H/¹³C NMR spectral data and X‐ray crystal structures of compounds (I) and (II) are presented. The olefinic bond connecting the indole and thio­phene moieties has Z geometry in both cases, and the mol­ecules crystallize in space groups P2₁/c and C2/c for (I) and (II), respectively. Slight thienyl ring‐flip disorder (ca 5.6%) was observed and modeled for (I).     

Poly[nickel(II)‐di‐μ‐4,4′‐bipyridyl‐κ4N:N′‐μ‐dichromato‐κ2O:O′] and poly[copper(II)‐di‐μ‐4,4'‐bipyridyl‐κ4N:N′‐μ‐dichromato‐κ2O:O′]

The novel title hybrid isomorphous organic–inorganic mixed‐metal dichromates, [Ni(Cr₂O₇)(C₁₀H₈N₂)₂] and [Cu(Cr₂O₇)(C₁₀H₈N₂)₂], have been synthesized. A non‐centrosymmetric three‐dimensional (4,6)‐net is formed from a linear chain of vertex‐linked [Cr₂O]²⁻ and [MN₄O]²⁺ (M = Ni and Cu) units, which in turn are linked by the planar bidentate 4,4′‐­bipyridine ligand through the four remaining vertices of the [MN₄O]²⁺ octahedra. There are two such three‐dimensional nets that interpenetrate with inversion symmetry.     

A three‐dimensional coordination polymer based on the Zn4(μ3‐OH)2 unit: poly[[(μ4‐benzene‐1,4‐dicarboxylato)bis(μ3‐benzene‐1,4‐dicarboxylato)bis(μ3‐hydroxido)bis(1,10‐phenanthroline‐5,6‐dione)tetrazinc] dihydrate]

The title compound, {[Zn₄(C₈H₄O₄)₃(OH)₂(C₁₂H₆N₂O₂)₂]·2H₂O}_n, has been prepared hydrothermally by the reaction of Zn(NO₃)₂·6H₂O with benzene‐1,4‐dicarboxylic acid (H₂bdc) and 1,10‐phenanthroline‐5,6‐dione (pdon) in H₂O. In the crystal structure, a tetranuclear Zn₄(OH)₂ fragment is located on a crystallographic inversion centre which relates two subunits, each containing a [ZnN₂O₄] octahedron and a [ZnO₄] tetrahedron bridged by a μ₃‐OH group. The pdon ligand chelates to zinc through its two N atoms to form part of the [ZnN₂O₄] octahedron. The two crystallographically independent bdc²⁻ ligands are fully deprotonated and adopt μ₃‐κO:κO′:κO′′ and μ₄‐κO:κO′:κO′′:κO′′′ coordination modes, bridging three or four Zn^II cations, respectively, from two Zn₄(OH)₂ units. The Zn₄(OH)₂ fragment connects six neighbouring tetranuclear units through four μ₃‐bdc²⁻ and two μ₄‐bdc²⁻ ligands, forming a three‐dimensional framework with uninodal 6‐connected α‐Po topology, in which the tetranuclear Zn₄(OH)₂ units are considered as 6‐connected nodes and the bdc²⁻ ligands act as linkers. The uncoordinated water molecules are located on opposite sides of the Zn₄(OH)₂ unit and are connected to it through hydrogen‐bonding interactions involving hydroxide and carboxylate groups. The structure is further stabilized by extensive π–π interactions between the pdon and μ₄‐bdc²⁻ ligands.