Synchrotron radiation for structure analysis—EXAFS and XANES

In this paper, a newly developed technique for the structure analysis of materials by the use of the X-rays emitted from storage ring of synchrotron is introduced. Principle, applications and limitations of the extended X-ray absorption fine structure (EXAFS) and X-ray absorption near edge structure (XANES) are discussed.     

Molecular characterization of brominated persistent pollutants using extended X-ray absorption fine structure (EXAFS) spectroscopy

X-ray absorption fine structure (EXAFS) spectroscopy spectra were collected for three brominated persistent pollutants: 6-bromo-2,4,5-trichlorophenol (BrTriClP), pentabromophenol (PentaBrP) and 3,3′,5,5′-tetrabromobisphenol A (TBBA). The substances were selected to be symmetrical (BrTriClP and TBBA) or asymmetrical (PentaBrP) with respect to the atomic Br positions and to differ in the number of bromine and other halide atoms, as well as their relative positions. The asymmetrical PentaBrP was modelled with special detail as not all bromine atoms have identical coordination environments. The studied substances displayed unique EXAFS spectra, which could be used to determine the molecular structure in fair detail. We conclude that EXAFS spectroscopy is a suitable technique for molecular characterization of the comparatively complex molecules within the class of compounds of brominated organic persistent pollutants. A detailed understanding of the EXAFS spectra of the pure compounds opens up possibilities to study the interactions with soil and sediment matrices by means of EXAFS spectroscopy. Figure Brominated organic persistent pollutants are characterized by EXAFS spectroscopy     

Electronic structure of aryl- and carbonyl-containing diazomethane derivatives,as disclosed by photoelectron spectroscopy

Vertical ionization energies (IE) of aryl and carbonyl derivatives of diazomethane have been determined by photoelectron spectroscopy. The types of the highest occupied molecular orbitals (HOMO) in these molecules are identified.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 325–328, February, 1993.     

Electronic structure of thiazides studied by 35Cl‐NQR spectroscopy and DFT calculations

NQR frequencies were determined for the ³⁵Cl isotope in a few benzodithiazine derivatives, chlorothiazide (CTZ), hydrochlorothiazide (HCTZ), althiazide (ATZ), trichloromethiazide (TCTZ), benzthiazide (BTZ) and furosemide (FSE), at liquid nitrogen and room temperatures. It was found that changes of the substituent at C‐3 are transferred through a system of coupled rings on to the chlorine atom at C‐6. The substituents occurring in thiazides can be ordered according to increasing electron‐acceptor properties as —CH₂SCH₂Ph < —CH₂SCH₂CH?CH₂ <—CHCl₂. At the liquid nitrogen temperature —CH₂SCH₂Ph and —CH₂SCH₂CH?CH₂ are electron donors, and CHCl₂ is an electron acceptor, whereas at room temperature —CH₂SCH₂Ph is an electron donor and —CH₂SCH₂CH?CH₂ and —CHCl₂ are electron acceptors. The character of the substituent properties is preserved irrespective of whether the system is aromatic or aliphatic. The NQR frequencies and substituents properties are well reproduced by the DFT B3LYP/6–311+G(2d,p) method. The topological properties of the Laplacian of the electron density were analysed within the AIM (atoms in molecules) approach. The changes in the electron density at C‐3 are correlated with the biological activity of the compounds studied. Copyright © 2003 John Wiley & Sons, Ltd.     

Electronic structure of francium

This article presents the first calculations of the electronic structure of francium for the bcc, fcc, and hcp structures, using the linearized augmented plane wave (LAPW) method. Both the local density approximation (LDA) and generalized gradient approximation (GGA) were used to calculate the electronic structure and total energy of francium (Fr). The GGA and LDA both found the total energy of the hcp structure to be slightly below that of the fcc and bcc structures, respectively. This is in agreement with similar results for the other alkali metals where the bcc structure is found not to be the ground state in contradiction to experiment. The equilibrium lattice constant, bulk modulus, and superconductivity parameters were calculated. Calculations of the enthalpy of the system suggest a structural transition from hcp to bcc under a pressure of 0.57 GPa. Using the McMillan‐Gaspari‐Gyorffy theories, we found that under further pressures, in the range of 3–14 GPa, Fr could be a superconductor with critical temperature up to 7 K. This is consistent with the other alkali metals and originates from an increase of the d‐like density of states at the Fermi level, which makes the alkali metals behave like transition metals. © 2013 Wiley Periodicals, Inc.     

Electronic structure, spectra, and magnetic circular dichroism of cyclohexa-, cyclohepta-, and cyclooctapyrrole

Three recently obtained expanded porphyrins represent nice examples of compounds for which the electronic and spectral properties can be predicted from symmetry considerations alone. Perimeter-model-based theoretical analysis of the electronic structure of doubly protonated cyclo[6], cyclo[7], and cyclo[8]pyrrole leads to the anticipation of qualitatively the same electronic absorption and magnetic circular dichroism patterns for all three compounds. These predictions are fully confirmed by experiments, as well as DFT and INDO/S calculations. Due to a characteristic pattern of frontier molecular orbitals, a degenerate HOMO and a strongly split LUMO pair, the three cyclopyrroles show comparable absorption intensity in the Q and Soret regions. Magnetic circular dichroism spectra reveal both A and B Faraday terms, of which the signs and magnitudes are in remarkably good agreement with theoretical expectations. The values of the magnetic moments of the two lowest degenerate excited states have also been obtained.     

Three-dimensional modeling of EXAFS spectral mixtures by combining Monte Carlo simulations and target transformation factor analysis

We have developed a new method for the three-dimensional modeling of extended X-ray absorption fine structure (EXAFS) spectra which enables the extraction of the local structure of aqueous metal complexes from spectral mixtures of several components. The new method combines two techniques: Monte Carlo simulation and target transformation factor analysis (TFA). Monte Carlo simulation is used to create random arrangements between the X-ray absorbing metal ion and the ligand atoms, and to calculate the theoretical EXAFS spectrum of each arrangement. The theoretical EXAFS spectrum is then introduced as test spectrum in the TFA procedure, to test whether or not the test spectrum is likely to be a component of the spectral mixtures. This coupled procedure is repeated until the error in the test spectrum is minimized. The new method can thus be used to isolate and refine the structure of complexes from spectral mixtures and to determine their relative concentrations, solely on the basis of an estimate of a ligand structure. The performance of the proposed method is validated using uranium Liii-edge EXAFS spectra of binary mixtures of two uranium(VI) 3,4-dihydroxybenzoic acid complexes.     

Hydration of lanthanoid(III) ions in aqueous solution and crystalline hydrates studied by EXAFS spectroscopy and crystallography: the myth of the "gadolinium break"

The structures of the hydrated lanthanoid(III) ions including lanthanum(III) have been characterized in aqueous solution and in the solid trifluoromethanesulfonate salts by extended X-ray absorption fine structure (EXAFS) spectroscopy. At ambient temperature the water oxygen atoms appear as a tricapped trigonal prism around the lanthanoid(III) ions in the solid nonaaqualanthanoid(III) trifluoromethanesulfonates. Water deficiency in the capping positions for the smallest ions starts at Ho and increases with increasing atomic number in the [Ln(H(2)O)(9-x)](CF(3)SO(3))(3) compounds with x=0.8 at Lu. The crystal structures of [Ho(H(2)O)(8.91)](CF(3)SO(3))(3) and [Lu(H(2)O)(8.2)](CF(3)SO(3))(3) were re-determined by X-ray crystallography at room temperature, and the latter also at 100 K after a phase-transition at about 190 K. The very similar Ln K- and L(3)-edge EXAFS spectra of each solid compound and its aqueous solution indicate indistinguishable structures of the hydrated lanthanoid(III) ions in aqueous solution and in the hydrated trifluoromethanesulfonate salt. The mean Ln--O bond lengths obtained from the EXAFS spectra for the largest ions, La-Nd, agree with estimates from the tabulated ionic radii for ninefold coordination but become shorter than expected starting at samarium. The deviation increases gradually with increasing atomic number, reaches the mean Ln-O bond length expected for eightfold coordination at Ho, and increases further for the smallest lanthanoid(III) ions, Er-Lu, which have an increasing water deficit. The low-temperature crystal structure of [Lu(H(2)O)(8.2)](CF(3)SO(3))(3) shows one strongly bound capping water molecule (Lu-O 2.395(4) A) and two more distant capping sites corresponding to Lu-O at 2.56(1) A, with occupancy factors of 0.58(1) and 0.59(1). There is no indication of a sudden change in hydration number, as proposed in the "gadolinium break" hypothesis.     

Electronic structure and conformational study of thiobiurets

Quantum mechanical calculations at all valence complete neglect of differential overlap (CNDO/2) and self-consistent charge extend Huckel (SCC-EH) and the Pi electron Pariser-Parr-Pople with limited configuration interaction (PPP-LCI) levels of approximation have been accomplished for monothiobiuret and dithiobiuret. From the calculated results, a discussion of the electronic structure, photoelectron and electronic spectra and the conformational stability are given. The electronic and¹H nmr spectra are also reported. A trans-cis-CONHCS-structure is found to be the stable conformation for monothiobiuret consistent with other evidences.     

Electronic structure of extended titanium carbide nanocrystallites

The electronic band structure and stability of extended nanocrystallites (NCs) of titanium monocarbide TiC were investigated by the electron density functional-tight binding (DFTB) technique. The stability of prismatic NCs increases with the number of atomic layers; the electronic spectrum of these compounds changes from semiconductor (for NC of minimal atomic size) to metallike type inherent in crystalline titanium carbide.     

叶绿素稀土配位结构的EXAFS研究: 镧叶绿素a双层夹心分子 结构的确认

通过合成镧叶绿素a(La-Chla),研究稀土在叶绿素中的赋存状态。La-Chla的紫外可见光谱(UV-vis)、红外光谱(FT-IR)证实,镧离子已配位到叶绿素a的卟啉环上。其磁圆二色谱(MCD)在Soret带具有双层夹心卟啉结构的特征结构。通过扩展X射线吸收精细结构谱(EXAFS),采用双层夹心结构模型拟合,确定La周围的近邻结构,取得满意结果。表明合成镧叶绿素a具有双层夹心结构。La夹于两个卟啉环之间,与上下卟啉环上共八个N原子配位,La-N平均键长0.261nm。     

EXAFS, SAXS and Eu3+ Luminescence Spectroscopy of Sol-Gel Derived Siloxane-Polyethyleneoxide Hybrids

Hybrid Eu³⁺-doped silica-poliethyleneoxide (PEO) nanocomposites with covalent bonds between the inorganic (siloxane) and organic (PEO) phases have been obtained by sol-gel process. These materials are transparent, flexible and present high Eu³⁺ luminescence output. Their luminescence properties, local environment around europium ions and structure have been investigated as a function of europium content. EXAFS measurements indicate that the increase in Eu-doping induces a decrease in Eu³⁺ coordination number. An increase in symmetry degree around the metal ion is also observed for increasing Eu³⁺ concentration, while non radiative decay paths from the ⁵D₀ excited state become more important. SAXS results suggest the preferential interaction of europium ions with ether-type oxygens of the polymer chains. However, the existence of interactions between the cations and the carbonyl groups from urea bridges located at the siloxane-PEO interface can not be excluded.     

Electronic structure of the doped SnO_2

SnO2 doped with La, Ce, Sm, Zn, Ca, Al and Sb was prepared by sol-gel technique and characterized by TEM, BET, XPS and XAES. The effect of the dopants on the grain sizes of SnO2 was described and especially the effect of dopants on the distribution of the electronic state density (DESD) of Sn4d orbital was studied deeply by using X-ray-induced Auger electron spectros-copy (XAES). It was observed that the dopants could influence not only the grain sizes of SnO2 but also electronic structure of SnO2, as well as the stability of the doped SnO2 samples. The experiment results indicated that the structure and stability of SnO2 film could be improved by the chemical modification of the dopants.     

An EXAFS study of the molecular structure of heterometallic chalcogenide clusters

Applicability of EXAFS spectroscopy for determination of the molecular structure of heterometallic chalcogenide clusters in the crystalline state and in solution was examined. The spatial structure of the metal core of the FeMoW(μ₃-Se)(CO)₇(η⁵-C₅H₅) cluster was determined using EXAFS data obtained at the K absorption edge for Fe, Mo, and Se and at the L_III-edge for W. The geometric parameters (the bond lengths and bond angles) obtained from EXAFS data are close to those determined by X-ray analysis. The Mo K-edge EXAFS study of the structurally similar FeMo₂Te(CO)₇(η⁵-C₅H₅) cluster both in the crystalline state and ino-xylene solution confirmed that the geometry of the metal core of the cluster is retained in solution. Published inIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1395–1398, August, 2000.     

Electronic structure and chemical bond in carbides crystallizing in the Fe-W-C system

The electronic energy structure of MC, M₆C, and M₁₂C carbide systems and iron martensite in the absence of spin polarization was studied by the local coherent potential method using the cluster version of the MT approximation in terms of multiple scattering theory. The local partial density of the electronic states of atoms in crystals was calculated and their electronic structures were compared. The peculiarities of chemical bonding in crystals are discussed.     

Determination of the Mo surface environment of Mo/TiO2 catalysts by EXAFS,XANES and PCA

The local structure of oxidic Mo/TiO₂ catalysts (0.5 to 13.5 wt.% Mo) has been studied using EXAFS and XANES. Both EXAFS and XANES results suggest that the Mo surface phase is octahedrally coordinated for all Mo loadings. The EXAFS results were also examined using principal component analysis (PCA) to determine the number of Mo species present on the Mo/TiO₂ catalysts. Results from PCA of the Mo EXAFS spectra suggested the presence of three Mo species: two surface species and bulk MoO₃.     

On the detection by EXAFS spectroscopy of multimeric species and of complex anions in diethylether and diethylcarbonate

EXAFS spectroscopy has been shown to be a reliable tool for detecting the formation in solutions of molecular associations (LiBr)_n where n is solvent dependent. The signal Br^*...Br observed at 3.8₇ Å confirms the formation of tetrameric species (n=4) in diethylether (Et₂O) but only of dimers (n=2) in diethylcarbonate. Another signal observed at 2.4₅ Å has·been attributed to the pair Br^*...Li. The study of Li₂MBr₄–Et₂O solutions (M=Co, Cu, Zn) also affords new evidence for the formation of complex anions MBr ₄ ^2– but the spectra obtained at the bromine or metalK-edges for LiZnBr₃–Et₂O solutions seems to indicate the formation of more complex aggregates (LiMBr₃)_q. While the signal of the shell Br^*...Br is found quite intense for the reference CBr₄–Et₂O system, it does not appear for the MBr ₄ ^2– complex except for CuBr ₄ ^2– where the Jahn-Teller effect might rigidify a distorted tetrahedral structure.Presented, in part, at the VIIth International Conference on Non-Aqueous Solutions, Regensburg, West Germany, Ausgust 1980.     

Electronic structure and reactivity of organofluorine compounds

The basicity of isomeric bromoethylamines having a CF₃ substituent in the - and -positions with respect to the amino group was studied. According to potentiometric titration in H₂O, CH₃NO₂, and CH₃CN, the basicity of -trifluoromethylamines is 4–5 orders of magnitude lower than that of -trifluoromethyl isomers. Quantum-chemical calculations (AM1) showed that the decrease in the basicity of -trifluoromethylamines does not correlate with the change in the electron density at the nitrogen atom.For part 5, seeIzv. Akad. Nauk, Ser. Khim., 1992, 1334 [Bull. Russ. Acad. Sci., Div. Chem. Sci., 1992,41, 1041 (Engl. Transl.)].Deceased October 8, 1993.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 279–281, February, 1994.     

Investigation of radionuclide 63Ni(II) sequestration mechanisms on mordenite by batch and EXAFS spectroscopy study

The sorption behavior and microscopic sequestration mechanisms of radionuclide 63Ni(II) on mordenite as a function of aging time,ionic strength,initial 63Ni(Ⅱ) concentrations,solid content and coexistent electrolyte ions were investigated by the com-bination of batch and EXAFS techniques.Macroscopic experiment results show that the sorption of 63Ni(Ⅱ) is dependent on ionic strength at pH<7,and independent of ionic strength at pH>7.The sorption percentage of 63Ni(Ⅱ) on mordenite increases with increasing solid content,while the sorption capacity decreases as solid content increases.The presence of different elec-trolyte ions can enhance or inhibit the sorption of Ni(II) on mordenite in various degrees.EXAFS analysis results of the sam-ples under three different ionic strengths suggest that the retained 63Ni(Ⅱ) in these samples exists in an octahedral environment with six water ligands.In the initial period of rapid uptake,the sorption of 63Ni(Ⅱ) is dominated by the formation of in-ner-sphere surface complexes.As aging time increases,63Ni(Ⅱ) sequestration behavior tends to be mainly controlled by the formation of Ni phyllosilicate co-precipitates and/or Ni(OH)2(s) precipitates.Results for the second shell fit of the sample pre-pared at an initial 63Ni(Ⅱ) concentration of 100 mg/L indicate the possible formation of Ni polynuclear surface complexes.Both the macroscopic sorption data and the molecular level evidence of 63Ni(Ⅱ) surface speciation at the mordenite/water in-terfaces should be factored into better predictions of the mobility and bioavailability of 63Ni(Ⅱ) in environment mediums.