Probing the donor-acceptor proximity on the physicochemical properties of porphyrin-fullerene dyads: "tail-on" and "tail-off" binding approach.

A new approach of probing proximity effects in porphyrin-fullerene dyads by using an axial ligand coordination controlled "tail-on" and "tail-off" binding mechanism is reported. In the newly synthesized porphyrin-fullerene dyads for this purpose, the donor-acceptor proximity is controlled either by temperature variation or by an axial ligand replacement method. In o-dichlorobenzene, 0.1 M (TBA)ClO(4), the synthesized zincporphyrin-fullerene dyads exhibit seven one-electron reversible redox reactions within the accessible potential window of the solvent and the measured electrochemical redox potentials and UV-visible absorption spectra reveal little or no ground-state interactions between the C(60) spheroid and porphyrin pi-system. The proximity effects on the photoinduced charge separation and charge recombination are probed by both steady-state and time-resolved fluorescence techniques. It is observed that in the "tail-off" form the charge-separation efficiency changes to some extent in comparison with the results obtained for the "tail-on" form, suggesting the presence of some through-space interactions between the singlet excited zinc porphyrin and the C(60) moiety in the "tail-off" form. The charge separation rates and efficiencies are evaluated from the fluorescence lifetime studies. The charge separation via the singlet excited states of zinc porphyrin in the studied dyads is also confirmed by the quick rise-decay of the anion radical of the C(60) moiety within 20 ns. Furthermore, a long-lived ion pair with lifetime of about 1000 ns is also observed in the investigated zinc porphyrin-C(60) dyads.     

Synthesis and complexation of multiarmed cycloveratrylene-type ligands: observation of the "boat" and "distorted-cup" conformations of a cyclotetraveratrylene derivative

Investigations of a previously reported ligand, hexakis(2-pyridylmethyl)cyclotricatechylene (1), and a new tetrameric bridging ligand, octakis(2-pyridylmethyl)cyclotetracatechylene (2), the latter constructed on a larger cyclotetraveratrylene (CTTV) scaffold, are described. Variable-temperature NMR studies support a "sofa" conformation for 2, akin to studies on the parent compound. The coordination chemistry of 2 and its smaller trimeric homologue have also been investigated with silver(I), copper(II) and palladium(II) salts. An unexpected chelating mode was observed for 1 in the structure of DMF subset[Pd(3)Cl(6)(1)] x DMF, whereby the palladium cations bridge two veratrole subunits rather than chelating within a single subunit. In the structure of [Ag(4)(2)][Co(C(2)B(9)H(11))(2)](4) x 2.8 CH(3)CN x H(2)O, ligand 2 adopts a "boat" conformation, whereas in [Pd(4)Cl(8)(2)] x 4 H(2)O, (1)H NMR spectroscopic studies and calculations indicate that the ligand is present in a previously unobserved "distorted-cup" conformation. This conformation was calculated to be approximately 90 kJ mol(-1) lower in energy than the alternative "sofa" conformation. Thus, coordination-induced conformational control over CTTV derivatives offers new routes to exploit the host-guest chemistry of these compounds.     

"Demonstration" vs. "designation" of measurement competence: the need to link accreditation to metrology

Formal acceptance of the results of chemical laboratories is increasingly organized through a) accreditation of measuring laboratories nationally and b) mutual recognition of accreditation internationally (through formal Multilateral Recognition Agreements, MRAs). However, real comparability of results of measurements is realized by using common (internationally agreed) measurement scales which make these results traceable to this scale, i.e. "traceable" to the same (internationally agreed) value of the unit of that scale. In addition, the criterion against which the evaluation is done, should be "external" to the measurement laboratories which are being evaluated. This is realized in IRMM's International Measurement Evaluation Programme (IMEP) where evaluation is performed against values which are anchored using "metrology", the science of measurement with its own rules, which offers a sound foundation for measurement in all scientific disciplines. It is argued in this paper that the demonstration of measurement capability against values on such scales provides a result-oriented rather than a procedure-oriented evaluation. Thus, competence can be "demonstrated" rather than just "designated" and this can be shown to both customers and regulators. It inspires more confidence.     

Switching "on" and "off" the expression of chirality in peptide rotaxanes

The hydrogen-bond-directed synthesis, X-ray crystal structures, and optical properties of the first chiral peptide rotaxanes are reported. Collectively these systems provide the first examples of single molecular species where the expression of chirality in the form of a circular dichroism (CD) response can selectively be switched "on" or "off", and its magnitude altered, through controlling the interactions between mechanically interlocked submolecular components. The switching is achievable both thermally and through changes in the nature of the environment. Peptido[2]rotaxanes consisting of an intrinsically achiral benzylic amide macrocycle locked onto various chiral dipeptide (Gly-L-Ala, Gly-L-Leu, Gly-L-Met, Gly-L-Phe, and Gly-L-Pro) threads exhibit strong (10-20k deg cm(2) dmol(-1)) negative induced CD (theta;) values in nonpolar solvents (e.g. CHCl(3)), where the intramolecular hydrogen bonding between thread and macrocycle is maximized. In polar solvents (e.g., MeOH), where the intercomponent hydrogen bonding is weakened, or switched off completely, the elliptical polarization falls close to zero in some cases and can even be switched to large positive values in others. Importantly, the mechanism of generating the switchable CD response in the chiral peptide rotaxanes is also determined: a combination of semiempirical calculations and geometrical modeling using the continuous chirality measure (CCM) shows that the chirality is transmitted from the amino acid asymmetric center on the thread via the macrocycle to the C-terminal stopper of the rotaxane. This understanding could have important implications for other areas where chiral transmission from one chemical entity to another underpins a physical or chemical response, such as the seeding of supertwisted nematic liquid crystalline phases or asymmetric synthesis.     

Synthesis of "solid solution" and "core-shell" type cobalt--platinum magnetic nanoparticles via transmetalation reactions

In this article, we report the synthesis of "solid solution" and "core-shell" types of well-defined Co--Pt nanoalloys smaller than 10 nm. The formation of these alloys is driven by redox transmetalation reactions between the reagents without the need for any additional reductants. Also the reaction proceeds selectively as long as the redox potential between the two metals is favorable. The reaction between Co(2)(CO)(8) and Pt(hfac)(2) (hfac = hexafluoroacetylacetonate) results in the formation of "solid solution" type alloys such as CoPt(3) nanoparticles. On the other hand, the reaction of Co nanoparticles with Pt(hfac)(2) in solution results in "Co(core)Pt(shell)" type nanoalloys. Nanoparticles synthesized by both reactions are moderately monodispersed (sigma < 10%) without any further size selection processes. The composition of the alloys can also be tuned by adjusting the ratio of reactants. The magnetic and structural properties of the obtained nanoparticles and reaction byproducts are characterized by TEM, SQUID, UV/vis, IR, EDAX, and XRD.     

Excited-state behavior of N-phenyl-substituted trans-3-aminostilbenes: where the "m-amino effect" meets the "amino-conjugation effect"

The electronic spectroscopy and photochemistry of the trans isomers of 3-(N-phenylamino)stilbene (m1c), 3-(N-methyl-N-phenylamino)stilbene (m1d), 3-(N,N-diphenylamino)stilbene (m1e), and 3-(N-(2,6-dimethylphenyl)amino)stilbene (m1f) and their double-bond constrained analogues m2a-m2c and m2e are reported. When compared with trans-3-aminostilbene (m1a), m1c-m1e display a red shift of the S0 --> S1 absorption and fluorescence spectra, lower oscillator strength and fluorescence rate constants, and more efficient S1 --> T1 intersystem crossing. Consequently, the N-phenyl derivatives m1c-m1e have lower fluorescence quantum yields and higher photoisomerization quantum yields. The corresponding N-phenyl substituent effect in m2a-m2e is similar in cyclohexane but smaller in acetonitrile. This is attributed to the weaker intramolecular charge transfer character for the S1 state of m2 so that the rates for intersystem crossing are less sensitive to solvent polarity. It is also concluded that N-phenyl substitutions do not change the triplet mechanism of photoisomerization for m1 in both nonpolar and polar solvents. Therefore, the "m-amino conjugation effect" reinforces the "m-amino effect" on fluorescence by further reducing its rate constants and highlights the N-phenyl-enhanced intersystem crossing from the "amino-conjugation effect" by making S1 --> T1 the predominant nonradiative decay pathway.     

Improving the performance of methylalumoxane: a facile and efficient method to trap "free" trimethylaluminum

The presence of "free" trimethylaluminum (TMA) in methylalumoxane (MAO) solutions can be highly detrimental to the performance of metallocene and "post-metallocene" olefin polymerization catalysts. The most used strategy to remove "free" TMA is to evaporate MAO solutions to dryness, until a free-flowing white powder ("solid MAO") is left. This procedure is tedious and potentially hazardous, because in some cases the distillate is a concentrated hydrocarbon solution of TMA. Moreover, "solid MAO" is poorly soluble in common polymerization media, and once in solution it can regenerate TMA to some extent. This communication reports on a facile alternative, which consists in the controlled addition of a sterically hindered phenol, such as 2,6-di-tert-butylphenol, effectively trapping "free" TMA. We show here that 2,6-di-tert-butylphenol/MAO solutions activate equally well the dichloro-precursors of well-known zirconocene and bis(phenoxyimine)Ti catalysts, and that their use in propene polymerization results in a substantially higher productivity, polymer stereoregularity, and/or average molecular mass compared with activation by MAO alone.     

The spectroscopic signature of the "all-surface" to "internally solvated" structural transition in water clusters in the n = 17-21 size regime

The existence of a transitional size regime where preferential stabilization alternates between "all-surface" (all atoms on the surface of a cluster) and "internally solvated" (one water molecule at the center of the cluster, fully solvated) configurations with the addition or the removal of a single water molecule, predicted earlier with the flexible, polarizable (many-body) Thole-type model interaction potential (TTM2-F), has been confirmed from electronic structure calculations for (H2O)n, n = 17-21. The onset of the appearance of the first "interior" configuration in water clusters occurs for n = 17. The observed structural alternation between interior (n = 17, 19, 21) and all-surface (n = 18, 20) global minima in the n = 17-21 cluster regime is accompanied by a corresponding spectroscopic signature, namely, the undulation in the position of the most redshifted OH stretching vibrations according to the trend: interior configurations exhibit more redshifted OH stretching vibrations than all-surface ones. These most redshifted OH stretching vibrations form distinct groups in the intramolecular region of the spectra and correspond to localized vibrations of donor OH stretches that are connected to neighbors via "strong" (water dimer-like) hydrogen bonds and belong to a water molecule with a "free" OH stretch.     

Making "wheels" and "cubes" from triangles

[Mn(IV)Mn(II)3] triangular units directed by the presence of tripodal alcohols self-assemble in the presence of azide and acetate ligands to form either a [Mn24] "wheel" or a [Mn32] "cube".     

On the formation mechanism of the "pancake" decahedron gold nanoparticle

We have studied the thermodynamic and kinetic growth mechanisms behind the formation of the "pancake" decahedron (D(h)) gold nanoparticle using computer simulation. Free energy calculations showed that the full pancake morphology is thermodynamically unstable across all the nanoparticle size ranges studied. However, from observations of growth simulations we discovered that a kinetic transport mechanism plays a significant contributing role in the formation process through a transfer of adatoms from the top and bottom (111) D(h) faces to the side (100) faces. More specifically we observed how diffusing adatoms on the (111) face are at times "pulled" off this face and into the (111)-(100) edge of the D(h), forcing a row of (100) side atoms into a (1x5) hexagonal reconstruction. Subsequently, this row of atoms was observed to buckle and then deconstruct forcing adatoms out onto the (100) side face completing the transfer. This transport mechanism is shown to be the main kinetic driving force behind the growth of the thermodynamically unstable pancake D(h) nanoparticle. The observed mechanism has implications for the nonequilibrium morphologies of nanoparticles involving a (100)-(111) surface boundary, especially for systems with surface reconstructions which increase the density of the surface.     

Size evolution study of "molecular" and "atom-in-cluster" polarizabilities of medium-size gold clusters

A study on static polarizabilities for a family of gold clusters (Au(n), n = 6, 12, 20, 34, 54) is presented. For each cluster, a density functional theory perturbation theory calculation was performed to compute the cluster polarizability and the polarizability of each atom in the cluster using Bader's "quantum theory of atoms in molecules" formalism. The cluster polarizability tensor, α(cluster), is expressed as a sum of the atom-in-molecule tensors, α(cluster)=∑(Ω)α(Ω). A strong quadratic correlation (R(2) = 0.98) in the isotropic polarizability of atoms in the cluster and their distance to the cluster center of mass was observed. The cluster polarizabilities are in agreement with previous calculations.     

Modeling the electrophoresis of peptides and proteins: improvements in the "bead method" to include ion relaxation and "finite size effects"

A bead model methodology developed in our lab (Xin et al. J. Phys. Chem. B 2006, 110, 1038) and applicable to modeling the free solution electrophoretic mobility of peptides and proteins is generalized in two significant ways. First, an approximate account is taken of the relaxation effect, which makes the methodology applicable to more highly charged peptides and proteins than was previously possible. Second, a more accurate account is taken of the finite size of the beads making up the model structure. This improvement makes the method applicable at higher salt concentrations and/or to models consisting of larger sized subunits. The relaxation effect is accounted for by correcting "unrelaxed" mobilities on the basis of model size and average electrostatic surface, or zeta potential. Correction factors are estimated using those of spheres with the same hydrodynamic radius and zeta potential as the model structure. The correction factors of spheres are readily determined. The more general methodology is first applied to two sets of peptides (74 different peptides total) varying in size from 2 to 42 amino acids. The sets also cover a wide range of net charges. It is shown that accounting for finite bead size results in a small change in model mobilities under the conditions of the experiments (35 mM monovalent salt). The correction for ion relaxation, however, can be significant for highly charged peptides and improves agreement between model and experimental mobilities. Our correction procedure is also tested by examining the electrophoretic mobility of a particular protein "charge ladder" (Carbeck et al. J. Am. Chem. Soc. 1999, 121, 10,671), where the protein charge is varied over a wide range yet the conformation remains essentially constant. In summary, the effects of ion relaxation can be significant if the absolute electrophoretic mobility of a peptide exceeds approximately 0.20 cm2/(kV s).     

First atropo-divergent total synthesis of the antimalarial korupensamines A and B by the "lactone method"

The stereoselective total synthesis of the antimalarial korupensamines A (1a) and B (1b) by application of the "lactone method" is described. Key steps of this first atropo-selective access to 5,8'-coupled naphthylisoquinoline alkaloids were the regioselective intramolecular coupling of ester 8 to give the configurationally labile lactone-bridged biaryl 9 and its atropisomer-selective cleavage with a variety of chiral and achiral H-nucleophiles, yielding the configurationally stable P-diol 10a or, optionally, the M-product 10b. From the axially chiral phenylisoquinolines thus obtained atropo-diastereodivergently, the authentic natural naphthylisoquinolines with the respective axial configurations, korupensamines A (1a) and B (1b), were obtained by completion of the second naphthalene ring, starting from the previous "bridgehead" C1 unit.     

Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores

Multiconfigurational second-order perturbation theory computations and reaction path mapping for the retinal protonated Schiff base models all-trans-nona-2,4,6,8-tetraeniminium and 2-cis-nona-2,4,6,8-tetraeniminium cation demonstrate that, in isolated conditions, retinal chromophores exhibit at least three competing excited-state double bond isomerization paths. These paths are associated with the photoisomerization of the double bonds in positions 9, 11, and 13, respectively, and are controlled by barriers that favor the position 11. The computations provide a basis for the understanding of the observed excited-state lifetime in both naturally occurring and synthetic chromophores in solution and, tentatively, in the protein environment. In particular, we provide a rationalization of the excited-state lifetimes observed for a group of locked retinal chromophores which suggests that photoisomerization in bacteriorhodopsin is the result of simultaneous specific "catalysis" (all-trans --> 13-cis path) accompanied by specific "inhibition" (all-trans --> 11-cis path). The nature of the S(1) --> S(0) decay channel associated with the three paths has also been investigated at the CASSCF level of theory. It is shown that the energy surfaces in the vicinity of the conical intersection for the photoisomerization about the central double bond of retinal (position 11) and the two corresponding lateral double bonds (positions 9 and 13) are structurally different.     

Theoretical investigation of the "CO in"-"CO out" isomerization in a [2Fe-2S] ferredoxin: free energy profiles and redox states

This paper reports on extensive molecular dynamics simulations (about 40 ns in total) in both the reduced and the oxidized states of Ferredoxin from Cyanobacterium Anabaena PCC7119. These calculations have provided us with the free energy profile of the phi(47) backbone angle which controls the "CO in" to "CO out" transition of Cys46 in the reduced and oxidized Fd7119. Our main motivation has been to identify the time scales involved in the reduction of Fd and single out the amino acid residues crucially affecting the conformational change and, thus, electron transfer. The free energy profiles obtained in this study are relevant to electron transfers in the PSI/Fd7119 and Fd7119/FNR complexes. Our findings based on hydrated ferredoxin simulations are that activated processes are to occur in the protein during electron transfer to and from ferredoxin. The relative stability and the activation barrier of the "CO in" to "CO out" transition can be modulated by the distance between the Ser47 and the Glu94 residues. In our calculations, for short distances, the "CO in" state is favored in the reduced form, whereas for large distances, the "CO out" state becomes increasingly favored. Accordingly, conformational changes in Fd7119 when bound to PSI or FNR can have crucial effects on the kinetics of the electron transfer. Our simulations also show that the hydrogen bond between between Ser47(OG) and Cys46(O) is essential to lock in the "CO out" state. This finding explains why only the Ser47Thr Fd7119 mutant sustains electron transfer activity, as only residues serine and threonine can form a specific hydrogen bond with Cys46(O). Finally, our simulations predict that Phe65 has a large probability of being in close contact with the Cys46(O) at the top of the conformational free energy barrier. This carbonyl/phenyl ring interaction can then facilitate the de-localization of the Fd's electron toward the Pi orbitals of Phe65 aromatic ring which is thought to be crucial to the Fd7119/FNR electron transfer     

Amphiphilic Janus gold nanoparticles via combining "solid-state grafting-to" and "grafting-from" methods

Despite the great efforts that have been made toward obtaining Janus architectures, synthesizing sub-10 nanometer Janus nanoparticles (NPs) modified with different types of polymers remains a challenging task. In this Communication, "solid-state grafting-to" and "grafting-from" methods were combined to obtain Janus gold NPs (AuNPs) modified with two types of polymer chains on the opposite sides of the NP. We used functionalized polymer single crystals as the solid substrates to immobilize AuNPs. We then used atom transfer radical polymerization to grow polymer chains on the "free" side of the AuNPs. Amphiphilic polyethylene oxide (PEO)-Au-poly(methyl methacrylate), PEO-Au-poly(tert-butyl acrylate) and hydrophilic PEO-Au-poly(acrylic acid) were synthesized. The Janus nature was demonstrated using a platinum-nanoparticle-decoration method. Using polymer single crystals as the reaction substrates is advantageous because they afford higher throughput compared with self-assembled monolayers. Dissolution of the single crystal also leads to NPs with defined polymer patches. We anticipate that our approach could serve as a generic method for synthesizing polymer-functionalized, sub-10 nm Janus NPs. This unique system holds promises for achieving controlled assembly and tunable optic and electronic properties of NPs.     

Fabrication of "roll-off" and "sticky" superhydrophobic cellulose surfaces via plasma processing

Most of the artificial superhydrophobic surfaces that have been fabricated to date are not biodegradable, renewable, or mechanically flexible and are often expensive, which limits their potential applications. In contrast, cellulose, a biodegradable, renewable, flexible, inexpensive, biopolymer which is abundantly present in nature, satisfies all the above requirements, but it is not superhydrophobic. Superhydrophobicity on cellulose paper was obtained by domain-selective etching of amorphous portions of the cellulose in an oxygen plasma and subsequently coating the etched surface with a thin fluorocarbon film deposited via plasma-enhanced chemical vapor deposition using pentafluoroethane as a precursor. Variation of plasma treatment yielded two types of superhydrophobicity : "roll-off" (contact angle (CA), 166.7 degrees +/- 0.9 degrees ; CA hysteresis, 3.4 degrees +/- 0.1 degrees ) and "sticky" (CA, 144.8 degrees +/- 5.7 degrees ; CA hysteresis, 79.1 degrees +/- 15.8 degrees ) near superhydrophobicity. The nanometer scale roughness obtained by delineating the internal roughness of each fiber and the micrometer scale roughness which is inherent to a cellulose paper surface are robust when compared to roughened structures created by traditional polymer grafting, nanoparticle deposition, or other artificial means.     

Micelles for the self-assembly of "off-on-off" fluorescent sensors for pH windows

A micellar approach is proposed to build a series of systems featuring an "off-on-off" fluorescent window response with changes in pH. The solubilizing properties of micelles are used to self-assemble, in water, plain pyrene with lipophilized pyridine and tertiary amine moieties. Since these components are contained in the small volume of the same micelle, pyrene fluorescence is influenced by the basic moieties: protonated pyridines and free tertiary amines behave as quenchers. Accordingly, fluorescence transitions from the "off" to the "on" state, and viceversa, take place when the pH crosses the pK(a) values of the amine and pyridine fragments. To obtain an "off-on-off" fluorescent response in this investigation we use either a set of dibasic lipophilic molecules (containing covalently linked pyridine and tertiary amine groups) or combinations of separate, lipophilic pyridines and tertiary amines. The use of combinations of dibasic and monobasic lipophilic molecules also gives a window-shaped fluorescence response with changes in pH: it is the highest pyridine pK(a) and the lowest tertiary amine pK(a) that determine the window limits. The pK(a) values of all the examined lipophilic molecules were determined in micelles, and compared with the values found for the same molecules in solvent mixtures in which they are molecularly dispersed. The effect of micellization is to significantly lower the observed protonation constants of the lipophilized species. Moreover, the more lipophilic a molecule is, the lower the observed logK value is. Accordingly, changing the substituents on the basic moieties or modifying their structure, tuning the lipophilicity of the mono- or dibases, and choosing among a large set of possible combination of lipophilized mono- and dibases have allowed us to tune, almost at will, both the width and the position along the pH axis of the obtained fluorescent window.