Designed Negative Feedback from Transiently Formed Catalytic Nanostructures

Highly dynamic and complex systems of microtubules undergo a substrate‐induced change of conformation that leads to polymerization. Owing to the augmented catalytic potential at the polymerized state, rapid hydrolysis of the substrate is observed, leading to catastrophe, thus realizing the out‐of‐equilibrium state. A simple synthetic mimic of these dynamic natural systems is presented, where similar substrate induced conformational change is observed and a transient helical morphology is accessed. Further, augmented catalytic potential of these helical nanostructures leads to rapid hydrolysis of the substrate providing negative feedback on the stability of the nanostructures and realization of an out‐of‐equilibrium state. This simple system, made from amino acid functionalized lipids, demonstrates a substrate‐induced self‐assembled state, where the fuel‐to‐waste conversion leads to the temporal presence of helical nanostructures.     

In Vitro Selection of pH‐Activated DNA Nanostructures

We report the first in vitro selection of DNA nanostructures that switch their conformation when triggered by change in pH. Previously, most pH‐active nanostructures were designed using known pH‐active motifs, such as the i‐motif or the triplex structure. In contrast, we performed de novo selections starting from a random library and generated nanostructures that can sequester and release Mipomersen, a clinically approved antisense DNA drug, in response to pH change. We demonstrate extraordinary pH‐selectivity, releasing up to 714‐fold more Mipomersen at pH 5.2 compared to pH 7.5. Interestingly, none of our nanostructures showed significant sequence similarity to known pH‐sensitive motifs, suggesting that they may operate via novel structure‐switching mechanisms. We believe our selection scheme is general and could be adopted for generating DNA nanostructures for many applications including drug delivery, sensors and pH‐active surfaces.     

Chemically Fueled Dissipative Self‐Assembly that Exploits Cooperative Catalysis

In living systems, dissipative processes are driven by the endergonic hydrolysis of chemical fuels such as nucleoside triphosphates. Now, through a simple model system, a transient self‐assembled state is realized by utilizing the catalytic effect of histidine on the formation and breaking of ester bonds. First, histidine facilitates the ester bond formation, which then rapidly co‐assembles to form a self‐supporting gel. An out‐of‐equilibrium state is realized owing to the cooperative catalysis by the proximal histidines in the assembled state, driving the second pathway and resulting in disassembly to sol. Cooperative effects that use the dual role of imidazoles as nucleophile and as proton donor is utilized to achieve transient assemblies. This simple system mimics the structural journey seen in microtubule formation where the substrate GTP facilitates the non‐covalent assembly and triggers a cooperative catalytic process, leading to substrate hydrolysis and subsequent disassembly.     

Hierarchical Hollow Hydroxyapatite Microspheres: Microwave‐Assisted Rapid Synthesis by Using Pyridoxal‐5′‐Phosphate as a Phosphorus Source and Application in Drug Delivery

Three‐dimensional (3D) hydroxyapatite (HAP) hierarchical nanostructures, in particular hollow nanostructures, have attracted much attention owing to their potential applications in many biomedical fields. Herein, we report a rapid microwave‐assisted hydrothermal synthesis of a variety of hydroxyapatite hierarchical nanostructures that are constructed by the self‐assembly of nanorods or nanosheets as the building blocks, including HAP nanorod‐assembled hierarchical hollow microspheres (HA‐NRHMs), HAP nanorod‐assembled hierarchical microspheres (HA‐NRMs), and HAP nanosheet‐assembled hierarchical microspheres (HA‐NSMs) by using biocompatible biomolecule pyridoxal‐5′‐phosphate (PLP) as a new organic phosphorus source. The PLP molecules hydrolyze to produce phosphate ions under microwave‐hydrothermal conditions, and the phosphate ions react with calcium ions to form HAP nanorods or nanosheets; then, these nanorods or nanosheets self‐assemble to form 3D HAP hierarchical nanostructures. The preparation method reported herein is time‐saving, with microwave heating times as short as 5 min. The HA‐NRHMs consist of HAP nanorods as the building units, with an average diameter of about 50 nm. The effects of the experimental conditions on the morphology and crystal phase of the products are investigated. The hydrolysis of PLP under microwave‐hydrothermal conditions and the important role of PLP in the formation of 3D HAP hierarchical nanostructures are investigated and a possible formation mechanism is proposed. The products are explored for potential applications in protein adsorption and drug delivery. Our experimental results indicate that the HA‐NRHMs have high drug/protein‐loading capacity and sustained drug‐release behavior. Thus, the as‐prepared HA‐NRHMs are promising for applications in drug delivery and protein adsorption.     

Organogelation‐Controlled Topochemical [2+2] Cycloaddition and Morphological Changes: From Nanofiber to Peculiar Coaxial Hollow Toruloid‐Like Nanostructures

Novel amphiphilic molecules composed of naphthylacryl and L ‐glutamide moieties (1‐NA and 2‐NA) have been designed and their organogel formation in various organic solvents as well as their self‐assembled nanostructures have been investigated. Both compounds formed organogels in many organic solvents, ranging from nonpolar to polar, and self‐assembled into essentially nanofiber structures, although some twist or belt structures could be observed in certain solvents. A gel of compound 2‐NA in ethanol initially self‐assembled into nanofibers and then these were transformed into a family of coaxial hollow toruloid‐like (CHTL) nanostructures under irradiation, in which various toroids and disks of different sizes were stacked coaxially. We have established that a topochemical [2+2] cycloaddition in the organogel triggers this transformation. When the gel was fabricated into xerogels in which no ethanol remained, such morphological changes could not happen. This might be the first report of an organogel, in which both organized nanofibers and solvent coexist, controlling a topochemical reaction as well as the self‐assembled nanostructures formed. Due to the formation of the toruloid‐like nanostructures, the gel collapsed to a precipitate. However, upon heating this precipitate with ethanol, it redissolved and then formed a gel and self‐assembled into nanofibers once more. Thus, a reversible morphological transformation between nanofibers and an unprecedented series of toruloid‐like nanostructures can be induced by alternately heating and irradiating the gel.     

Towards the standard-module approach to disulfide-linked polypeptide nanostructures. I. Methodological prerequisites and mass spectrometric characterization of the test two-loop structure

Potentially biologically-active nanostructures can be created from single chains of unmodified peptides by cross-linking different regions of the chain by disulfide bonds and cleaving the chain at specified sites to obtain the final configuration. The availability of techniques for assembly and characterization of such structures was tested on a two-loop structure created from a 21-residue linear peptide. Directed intra-molecular disulfide bond formation was performed by inserting partial sequences favoring intra-molecular SS bond formation ("loops") separated by partial sequences disfavoring such a process ("spacers") into the precursor sequence. Peptide bond cleavage by partial acid hydrolysis at specific sites (GG, NP/DP) inside the loops opened them; the same process in the spacer separated the loops. Synthesis, oxidation and bond cleavage were monitored by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI ToF MS). The hydrolysis fragments of the produced nanostructures were characterized by tandem electrospray ionization Fourier transform mass spectrometry (ESI FT-MS) with collisional and electron capture dissociations. The latter technique was especially useful as it cleaves SS bonds preferentially. The feasibility of the proposed synthesis approach and the adequacy of the analysis techniques for the test structure were demonstrated.     

Controlled Construction of Cyclic d / l Peptide Nanorods

Cyclic d / l peptides (CPs) assemble spontaneously via backbone H‐bonding to form extended nanostructures. These modular materials have great potential as versatile bionanomaterials. However, the useful development of CP nanomaterials requires practical methods to direct and control their assembly. In this work, we present novel, heterogeneous, covalently linked CP tetramers that achieve local control over the CP subunit order and composition through coupling of amino acid side‐chains using copper‐activated azide–alkyne cycloaddition and disulfide bond formation. Cryo‐transmission electron microscopy revealed the formation of highly ordered, fibrous nanostructures, while NMR studies showed that these systems have strong intramolecular H‐bonding in solution. The introduction of inter‐CP tethers is expected to enable the development of complex nanomaterials with controllable chemical properties, facilitating the development of precisely functionalized or “decorated” peptide nanostructures.     

Fuel‐Responsive Allosteric DNA‐Based Aptamers for the Transient Release of ATP and Cocaine

We show herein that allostery offers a key strategy for the design of out‐of‐equilibrium systems by engineering allosteric DNA‐based nanodevices for the transient loading and release of small organic molecules. To demonstrate the generality of our approach, we used two model DNA‐based aptamers that bind ATP and cocaine through a target‐induced conformational change. We re‐engineered these aptamers so that their affinity towards their specific target is controlled by a DNA sequence acting as an allosteric inhibitor. The use of an enzyme that specifically cleaves the inhibitor only when it is bound to the aptamer generates a transient allosteric control that leads to the release of ATP or cocaine from the aptamers. Our approach confirms that the programmability and predictability of nucleic acids make synthetic DNA/RNA the perfect candidate material to re‐engineer synthetic receptors that can undergo chemical fuel‐triggered release of small‐molecule cargoes and to rationally design non‐equilibrium systems.     

Polymer nanodisks by collapse of nanocapsules

It is an important challenge to make disk-like polymeric nanostructures. Herein we report a facile method for preparing polymer nanodisks by self-collapse of nanocapsules self-assembled from a statistical copolymer after partial hydrolysis. We find that partial hydrolysis of the statistical copolymer is crucial for the formation of nanodisks as it affords a suitable rigidity for the membrane of nanocapsules. The nanodisk structure has been confirmed by transmission electron microscopy(TEM), scanning electron microscopy(SEM) and atomic force microscopy(AFM) studies with a thickness of 6.3±0.2 nm. Overall, our results demonstrated a new method for making disk-like nano-objects.     

Metal Redox Processes for the Controlled Synthesis of Metal Alloy Nanoparticles

Nanocrystalline metals have received widespread interest and found various applications owing to their magnetic and catalytic properties and in energy‐related fields. A flexible approach for the growth of nanoalloys with controlled properties and well‐defined structures on the atomic scale is thus greatly desired. A new synthetic method that avoids incompatible reduction potentials and rates would be critical to grow metal nanostructures with high purities and the desired stoichiometries. A metal‐redox strategy that employs spontaneous oxidation/reduction reactions to grow nanocrystalline alloys using molecular‐scale zerovalent metal precursors is now described. The selection of suitable zerovalent metal species allows for thermodynamic control of the compositional stoichiometry during the temperature‐dependent formation of the metal alloy nanoparticles. A practical and scalable strategy for nanoalloy growth that can potentially produce key metal components of superior metallurgical quality for catalytic and magnetic systems has thus been developed.     

Preparation of Chemically Modified RNA Origami Nanostructures

In nucleic acid nanotechnology, designed RNA molecules are widely explored because of their usability originating from RNA’s structural and functional diversity. Herein, a method to design and prepare RNA nanostructures by employing DNA origami strategy was developed. A single‐stranded RNA scaffold and staple RNA strands were used for the formation of RNA nanostructures. After the annealing of the mixtures, 7‐helix bundled RNA tile and 6‐helix bundled RNA tube structures were observed as predesigned shapes. These nanostructures were easily functionalized by introducing chemical modification to the RNA scaffolds. The DNA origami method is extended and utilized to construct RNA nanostructures.     

Helical Toroids Self‐Assembled from a Binary System of Polypeptide Homopolymer and its Block Copolymer

Toroids and helices are fundamental geometrical structures in nature. Polymers can self‐assemble into various nanostructures, including both toroids and helices; however, nanostructures combining toroidal and helical morphologies (that is, helical toroids) are rarely observed. A binary system is reported containing polypeptide homopolymer and its block copolymer, which can hierarchically self‐assemble into uniform helical nanotoroids in solution. The formation of the helical toroids is a successive two‐step process. First, the homopolymers aggregate into fibrils and convolve into toroids, thereby resembling the toroidal condensation of deoxyribonucleic acid (DNA) chains. Second, the block copolymers self‐assemble on the homopolymer toroids and result in helical surface patterns. Additionally, the chirality of the surface helical patterns can be varied by the chirality of the polypeptide block copolymers.     

A complete set of self‐consistent charge density‐functional tight‐binding parametrization of zinc chalcogenides (ZnX; X=O,S, Se,and Te)

We have developed a complete set of self‐consistent charge density‐functional tight‐binding parameters for Zn? X (X = Zn, O, S, Se, Te, Cd, H, C, and N). The transferability of the derived parameters has been tested against Pseudo Potential‐Perdew, Burke and Ernzerhof (PP‐PBE) calculations and experimental values (whenever available) for corresponding bulk systems (e.g., hexagonal close packing, zinc‐blende, and wurtzite(wz)), various kinds of nanostructures (such as nanowires, surfaces, and nanoclusters), and also some small molecular systems. Our results show that the derived parameters reproduce the structural and energetic properties of the above‐mentioned systems very well. With the derived parameter set, one can study zinc‐chalcogenide nanostructures of relatively large size which was otherwise prohibited by other methods. The Zn‐Cd parametrization developed in this article will help in studying large semiconductor hetero‐nanostructures of Zn and Cd chalcogenides such as ZnX/CdX core/shell nanoparticles, nanotubes, nanowires, and nanoalloys. © 2012 Wiley Periodicals, Inc.     

By‐Product‐Free Siloxane‐Bond Formation and Programmed One‐Pot Oligosiloxane Synthesis

Siloxane bonds are usually synthesized by condensation reactions, such as hydrolysis/dehydration and cross‐coupling reactions, in which the generation of by‐products during bond formation can not be avoided. We have developed a one‐pot sequence of iridium‐catalyzed silyl ester hydrosilylation and boron‐catalyzed rearrangement of the resulting disilyl acetals for the construction of siloxane bonds, in principle without the formation of any by‐products. Moreover, the programmed synthesis of tri‐, tetra‐, and pentasiloxanes was possible in a single flask by combining the above sequence of iridium‐catalyzed hydrosilylation and boron‐catalyzed rearrangement with a boron‐catalyzed cross‐coupling reaction. The obtained oligosiloxanes are difficult to synthesize selectively by other known synthetic procedures.     

In‐Situ Nanostructuring and Stabilization of Polycrystalline Copper by an Organic Salt Additive Promotes Electrocatalytic CO2 Reduction to Ethylene

Bridging homogeneous molecular systems with heterogeneous catalysts is a promising approach for the development of new electrodes, combining the advantages of both approaches. In the context of CO₂ electroreduction, molecular enhancement of planar copper electrodes has enabled promising advancement towards high Faradaic efficiencies for multicarbon products. Besides, nanostructured copper electrodes have also demonstrated enhanced performance at comparatively low overpotentials. Herein, we report a novel and convenient method for nanostructuring copper electrodes using N,N′‐ethylene‐phenanthrolinium dibromide as molecular additive. Selectivities up to 70 % for C_≥2 products are observed for more than 40 h without significant change in the surface morphology. Mechanistic studies reveal several roles for the organic additive, including: the formation of cube‐like nanostructures by corrosion of the copper surface, the stabilization of these nanostructures during electrocatalysis by formation of a protective organic layer, and the promotion of C_≥2 products.     

Four‐Dimensional Deoxyribonucleic Acid–Gold Nanoparticle Assemblies

Organization of gold nanoobjects by oligonucleotides has resulted in many three‐dimensional colloidal assemblies with diverse size, shape, and complexity; nonetheless, autonomous and temporal control during formation remains challenging. In contrast, living systems temporally and spatially self‐regulate formation of functional structures by internally orchestrating assembly and disassembly kinetics of dissipative biomacromolecular networks. We present a novel approach for fabricating four‐dimensional gold nanostructures by adding an additional dimension: time. The dissipative character of our system is achieved using exonuclease III digestion of deoxyribonucleic acid (DNA) fuel as an energy‐dissipating pathway. Temporal control over amorphous clusters composed of spherical gold nanoparticles (AuNPs) and well‐defined core–satellite structures from gold nanorods (AuNRs) and AuNPs is demonstrated. Furthermore, the high specificity of DNA hybridization allowed us to demonstrate selective activation of the evolution of multiple architectures of higher complexity in a single mixture containing small and larger spherical AuNPs and AuNRs.     

Self-assembled nanostructures on VSe2 surfaces induced by Cu deposition.

Analytical transmission electron microscopy (TEM) and scanning electron microscopy (SEM) have been applied for the characterization of evolution, lateral arrangements, orientations, and the microscopic nature of nanostructures formed during the early stages of ultrahigh vacuum electron beam evaporation of Cu onto surfaces of VSe2 layered crystals. Linear nanostructure of relatively large lateral dimension (100-500 nm) and networks of smaller nanostructures (lateral dimension: 15-30 nm; mesh sizes: 500-2000 nm) are subsequently formed on the substrate surfaces. Both types of nanostructures are not Cu nanowires but are composed of two strands of crystalline substrate material elevating above the substrate surface. For the large nanostructures a symmetric roof structure with an inclination angle of approximately 30 degrees with respect to the substrate surface could be deduced from detailed diffraction contrast experiments. In addition to the nanostructure networks a thin layer of a Cu-VSe2 intercalation phase of 3R polytype is observed at the substrate surface. A dense network of interface dislocations indicates that the phase formation is accompanied by in-plane strain. We present a model that explains the formation of large and small nanostructures as consequences of compressive layer strains that are relaxed by the formation of rooflike nanostructures, finally evolving into the observed networks with increasing deposition time. The dominating contributions to the compressive layer strains are considered to be an electronic charge transfer from the Cu adsorbate to the substrate and the formation of a Cu-VSe2 intercalation compound in a thin surface layer.     

Exploration on the microwave‐assisted synthesis and formation mechanism of polyaniline nanostructures synthesized in different hydrochloric acid concentrations

Under microwave‐assisted synthesis, polyaniline (PANI) products with multiple nanostructures were synthesized by the oxidative polymerization of aniline and ammonium peroxodisulfate in the different concentrations of hydrochloric acid solutions. The structural analysis of PANI using FTIR, UV, and XPS indicated that phenazine‐like oligomers were produced in acid‐free and low acidic systems. Moreover, long linear PANI chains were obtained in the presence of highly acidic solutions. The morphology of PANI observed by SEM and TEM showed that nanoscale structures, including stacked sheets, nanotubes, branched nanofibers, and uniform nanofibers, occurred respectively in acid‐free solution, low acidity, medium and high acidity systems, effectively regulating by acidity. The formation mechanism of PANI nanostructures was explored here. The sheets were formed by the oligomers containing flat phenazine rings that can be stacked together with strong π–π interactions. Furthermore, nanotubes were fabricated by the self‐curling of thin sheets consisted of phenazine‐like oligomers with numerous linear units in the chains. The nanofibers are supposed to form by the linear PANI chains and the secondary growth during aniline polymerization caused the branch formation on the nanofibers. All results indicate that acidity, rather than microwave assistance, is the critical factor that determines the polymerization mechanism and the final nanostructure. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 3357–3369     

Solvent‐Polarity‐Tuned Morphology and Inversion of Supramolecular Chirality in a Self‐Assembled Pyridylpyrazole‐Linked Glutamide Derivative: Nanofibers,Nanotwists, Nanotubes,and Microtubes

The self‐assembly of a low‐molecular‐weight organogelator into various hierarchical structures has been achieved for a pyridylpyrazole linked L ‐glutamide amphiphile in different solvents. Upon gel formation, supramolecular chirality was observed, which exhibited an obvious dependence on the polarity of the solvent. Positive supramolecular chirality was obtained in nonpolar solvents, whereas it was inverted into negative supramolecular chirality in polar solvents. Moreover, the gelator molecules self‐assembled into a diverse array of nanostructures over a wide scale range, from nanofibers to nanotubes and microtubes, depending on the solvent polarity. Such morphological changes could even occur for the xerogels in the solvent vapors. We found that the interactions between the pyridylpyrazole headgroups and the solvents could subtly change the stacking of the molecules and, hence, their self‐assembled nanostructures. This work exemplifies that organic solvents can significantly involve the gelation, as well as tune the structure and properties, of a gel.