Extending the limits of the selective 1D NOESY experiment with an improved selective TOCSY edited preparation function

Compared to its 2D counterpart, the selective 1D NOESY experiment offers greatly simplified spectral interpretation and is invaluable to the structure elucidation of small-to-medium sized molecules, although its application is limited to well-resolved resonances only. The doubly selective 1D TOCSY-NOESY experiment allows the 1D NOESY experiment to be extended to resonances within overlapped spectral regions. However, existing methods do not address the critical issue of zero-quantum interference, which leads to severe anti-phase distortions to the line shape of scalar coupled spins and often complicates the identification of weak NOE enhancements. In this communication, we describe an improved selective TOCSY edited preparation (STEP) function and its application to the selective 1D NOESY experiment. The STEP function incorporates a novel zero-quantum filter introduced by Thrippleton and Keeler [Angew. Chem. Int. Ed. 42 (2003) 3938], which permits essentially complete suppression of zero-quantum coherence in a single scan. Residual anti-phase distortions due to spin-state mixing are removed using the double difference methodology reported by Shaka et al. [45th Experimental NMR Conference, Pacific Grove, USA, 2004]. The combined use of these techniques ensures that the final spectra are free of distortions, which is crucial to the reliable detection of weak NOE enhancements. Although employed as an additional preparation period in the example demonstrated here, the STEP function affords a general editing tool for spectral simplification and can be applied to a range of experiments.     

Removal of zero-quantum peaks from 1D selective TOCSY and NOESY spectra

Selective 1D TOCSY and NOESY experiments are widely used for structure determination. However, they often give distorted peak shapes owing to coherence transfer though zero-quantum coherence (ZQ) which cannot be suppressed by conventional phase cycling or pulse-field gradients. This paper demonstrates that ZQ contributions can be removed from selective 1D spectra by introducing a ZQ evolution time, as previously demonstrated for 2D NOESY spectra by Wang et al. [A three-dimensional method for the separation of zero-quantum coherence and NOE in NOESY spectra, J. Magn. Reson. A 102 (1993) 116-121]. This approach is simple to implement and robust, and is not demanding of spectrometer hardware. Using a new approach to phase cycling described here, spectra can be acquired in a similar time to spectra without a ZQ evolution time.     

Processing DOSY spectra using the regularized resolvent transform

A new method for processing diffusion ordered spectroscopy (DOSY) data is presented. This method, the regularized resolvent transform (iRRT-the i denoting the adaptation of the method to evaluate the inverse Laplace transform), is better than conventional processing techniques for generating 2D DOSY spectra using data that has poor chemical shift resolution. From the same data, it is possible to use the iRRT to generate 1D subspectra corresponding to different components of the sample mixture; these subspectra compare favorably to 1D spectra of the pure substances. Both the 2D spectra and the 1D subspectra offer a vast improvement over results generated using a conventional processing technique (non-linear least-squares fitting). Consequently, we present the iRRT as a stable and reliable tool for solving the inverse Laplace transform problem present in experiments such as DOSY.     

Angle sensitive and depth selective CEMS spectra

It is shown that a pronounced depth selectivity of CEMS spectra, recorded by the use of a helium-flow proportional counter, can be achieved both by selecting the angle of the incident γ-ray beam and by selecting the energy of the detected electrons.     

Simultaneous selective detection of multiple quantum spectra

A three-dimensional multiple-quantum NMR experiment that produces individual spectra of all quantum orders is described. The separation of different quantum orders is accomplished via Fourier transformation with respect to the phase of the first two pulses of a generic three-pulse multiple-quantum sequence. This dramatically reduces the time required to obtain several selectively detected spectra and enhances the sensitivity and digital resolution from that obtained using the original two-dimensional technique. The experiment is demonstrated on the protons of para-chlorotoluene dissolved in the nematic liquid crystal Merck ZLI-1132.     

Simultaneous acquisition of pulse EPR orientation selective spectra

High resolution pulse EPR methods are usually applied to resolve weak magnetic electron-nuclear or electron-electron interactions that are otherwise unresolved in the EPR spectrum. Complete information regarding different magnetic interactions, namely, principal components and orientation of principal axis system with respect to the molecular frame, can be derived from orientation selective pulsed EPR measurements that are performed at different magnetic field positions within the inhomogeneously broadened EPR spectrum. These experiments are usually carried out consecutively, namely a particular field position is chosen, data are accumulated until the signal to noise ratio is satisfactory, and then the next field position is chosen and data are accumulated. Here we present a new approach for data acquisition of pulsed EPR experiments referred to as parallel acquisition. It is applicable when the spectral width is much broader than the excitation bandwidth of the applied pulse sequence and it is particularly useful for orientation selective pulse EPR experiments. In this approach several pulse EPR measurements are performed within the waiting (repetition) time between consecutive pulse sequences during which spin lattice relaxation takes place. This is achieved by rapidly changing the main magnetic field, B(0), to different values within the EPR spectrum, performing the same experiment on the otherwise idle spins. This scheme represents an efficient utilization of the spectrometer and provides the same spectral information in a shorter time. This approach is demonstrated on W-band orientation selective electron-nuclear double resonance (ENDOR), electron spin echo envelope modulation (ESEEM), electron-electron double resonance (ELDOR)--detected NMR and double electron-electron resonance (DEER) measurements on frozen solutions of nitroxides. We show that a factors of 3-6 reduction in total acquisition time can be obtained, depending on the experiment applied.     

Computer assisted assignment of 13C or 15N edited 3D-NOESY-HSQC spectra using back calculated and experimental spectra

A new tool, for the simulation of 15N or 13C edited 3D-NOESY-HSQC spectra using the complete relaxation matrix approach, has been developed and integrated in the program AURELIA. This tool should be particularly useful for the fast and reliable computer assisted assignment of 3D-NOESY-HSQC spectra by comparing back-calculated and experimental spectra in an iterative process. Folded spectra are sometimes used to enhance the digital resolution in the indirect dimensions of multidimensional spectra. However, these spectra are usually difficult to analyze. To simplify this assignment process we have incorporated the simulation and automated annotation of folded peaks into the program. It is hereby possible to simulate multiple folding in all three dimensions of 3D 15N- or 13C-NOESY-HSQC spectra. By comparing experimental 3D-NOESY-HSQC spectra with spectra back calculated from a single trial structure or a set of trial structures, a user can easily check if the final structures explain all experimental NOEs. The new feature has been successfully tested with the histidine-containing phosphocarrier protein HPr from Staphylococcus carnosus.     

Site selective optical spectra of free base porphin in anthracene

The low temperature optical spectra of free base porphin in crystalline anthracene have been observed in the visible region of the spectrum. Quasilines and broad components were observed in the region of the forbidden Q bands. Site selection techniques were used to separate the spectra of inequivalent site species, and vibronic frequencies were assigned in the ground state and excited Q states. The relative strengths of the broad and quasiline components of the spectra in the Q_x and Q_y states indicated that the host lattice may affect the relative transition strengths of Q_x and Q_y. These results indicated that the strength of the transition to Q_x is greater than that of Q_y for a free porphin molecule.     

High-resolution DOSY NMR with spins in different chemical surroundings: influence of particle exchange

The effect of chemical exchange in the diffusion-ordered (DOSY) spectra of a two-site system in the slow-exchange limit with respect to the chemical shift is studied. The problem is addressed both theoretically and experimentally. The relationship between diffusion time (t) and mean lifetimes (tau) is studied by the simulation of the magnetization attenuations as a function of the gradient strength, under PFG conditions. The influence of the difference in populations and diffusion coefficients of the two sites is also considered. In analogy to the limiting cases of fast- and slow-exchange with respect to the chemical shift, limiting cases with respect to the diffusion dimension are defined. The slow-exchange limit in diffusion corresponds to the relation of t and tau that allows us to observe the two spins in exchange associated with the individual diffusion coefficients of the two sites when no exchange is present. The fast-exchange limit in diffusion is reached when the relation of t and tau is such that the two spins present the same apparent diffusion coefficient. By using a model system consisting of water/t-butanol it is shown that by recording several DOSY experiments with increasing diffusion times it is possible to estimate the value of the exchange rate.     

Amino acid type identification in NMR spectra of proteins via beta- and gamma-carbon edited experiments

In this work, we introduce a set of pulse sequences that provide amino acid type identification of the NH correlation signals of proteins. The first pulse sequence is a modification of the CBCA(CO)NH experiment that exploits spin-coupling topologies to differentiate between amino acid types. A set of eight 2D ¹H–¹⁵N correlation spectra is recorded where the sign of the cross-peaks change from one spectrum to another according to the amino acid type of the preceding residue in the protein sequence. Linear combination of these eight data sets produces four subspectra. Taking also into account the sign of the correlation signals, this method allows the classification of the NH signals into six different groups, depending on the character of the preceding residue. This sequence is complemented with a (CGCBCACO)NH experiment that allows the subdivision of the largest of these groups into two smaller ones. Finally, a modification of the CBCANH experiment led to a similar classification of NH signals into six different groups, but now depending on the type of its own amino acid. The set of pulse sequences is demonstrated with two proteins of small to moderate size.     

Two-dimensional DOSY experiment with Excitation Sculpting water suppression for the analysis of natural and biological media

The Bipolar Pulse Pair Stimulated Echo NMR pulse sequence was modified to blend the original Excitation Sculpting water signal suppression. The sequence is a powerful tool to generate rapidly, with a good spectrum quality, bidimensional DOSY experiments without solvent signal, thus allowing the analysis of complex mixtures such as plant extracts or biofluids. The sequence has also been successfully implemented for a protein at very-low concentration in interaction with a small ligand, namely the salivary IB5 protein binding the polyphenol epigallocatechine gallate. The artifacts created by this sequence can be observed, checked and removed thanks to NPK and NMRnotebook softwares to give a perfect bidimensional DOSY spectrum.     

The selective enhancement of band intensities in resonance Raman spectra of cobalt corrinoids

The role of point group symmetry in relation to localized-site cluster expansions is elucidated. Simple ways in which to accomplish symmetry adaptation are described, and new supersymmetries are found to arise for certain types of wave function ansätze. These new supersymmetries are shown to provide additional quantum numbers, which although often approximate are found in some model cases to be exact.     

Simplifying experiments with a Mandelbrot set model of the phase transition theory

The study of the Mandelbrot set (MS) is a promising new approach to the phase transition theory. We suggest two improvements which drastically simplify the construction of the MS. They could be used to modify existing computer programs so that they start building the MS properly not only for the simplest families. This allows us to add one more parameter to the base function of the MS and demonstrate that this is not enough to make the phase diagram connected. The text was submitted by the author in English.     

Simplifying experiments with a Mandelbrot set model of the phase transition theory

The study of the Mandelbrot set (MS) is a promising new approach to the phase transition theory. We suggest two improvements which drastically simplify the construction of the MS. They could be used to modify existing computer programs so that they start building the MS properly not only for the simplest families. This allows us to add one more parameter to the base function of the MS and demonstrate that this is not enough to make the phase diagram connected.