Using noncovalent intra-strand and inter-strand interactions to prescribe helix formation within a metallo-supramolecular system

The effect of inter-strand and intra-strand interactions is explored in a metallo-supramolecular system in which the metal-ligand coordination requirements may be satisfied by more than one different supramolecular architecture. This is achieved by introducing alkyl substituents onto the spacers of readily prepared bis(pyridylimine) ligands. The alkyl substituents induce twisting within the ligand strand and this intra-strand effect favours formation of helical architectures. The alkyl substituents also introduce inter-strand CH.pi interactions into the system. For the smaller methyl group these are most effectively accommodated in a trinuclear circular helicate architecture. A solution mixture of dinuclear double-helicate and trinuclear circular helicate results from which, for copper(I), the trinuclear circular helicate crystallises. The CH.pi interactions endow the circular helicate with a bowl-shaped conformation and the triangular unit aggregates into a tetrahedral ball-shaped array. Low-temperature NMR studies indicate that the CH.pi interactions also confer a bowl-shaped conformation on the triangle in solution. The larger ethyl groups can sustain intra-strand CH.pi interactions in the lower nuclearity double-helical system and this is the unique architecture for that ligand system in both solution and the solid state. Crystal structures are described for both the copper(I) and silver(I) complexes. Thus we show that intra-strand interactions may be used to induce helicity within this system, while the nuclearity of the array can be prescribed by the inter-strand interactions.     

The First Coordinatively Saturated,Quadruply Stranded Helicate and Its Encapsulation of a Hexafluorophosphate Anion.

Incarcerated in a helical prison: The encapsulation of a PF₆⁻ ion within a quadruply stranded helicate (shown schematically) results from the self-assembly of four molecules of 1,4-bis(3-pyridyloxy)benzene and two Pd^II ions. This represents not only the first example of a coordinatively saturated quadruple helicate, but also the first example of the encapsulation of a complex anion by a helicate.     

A dynamic tricopper double helicate

The reaction between 8-aminoquinoline, 1,10-phenantholine-2,9-dicarbaldehyde, and copper(I) tetrafluoroborate gave a quantitative yield of a tricopper double helicate. The presence of dynamic covalent imine (C=N) bonds allowed this assembly to participate in two reactions not previously known in helicate chemistry: 1) It could be prepared through subcomponent substitution from a dicopper double helicate that contained aniline residues. An electron-poor aniline was quantitatively displaced; a more electron-rich aniline competed effectively with the aminoquinoline, setting up an equilibrium between dicopper and tricopper helicates that could be displaced towards the tricopper through the addition of further copper(I). 2) Both dicopper and tricopper helicates could be prepared simultaneously from a mixture of phenanthroline dialdehyde, aniline, and aminoquinoline, which contained all possible imine condensation products in equilibrium. Following the addition of copper(I), thermodynamic equilibration on both covalent and coordinative levels eliminated all partially-formed and mixed imine ligands from the mixture, leaving the helicates as exclusive products.     

Helicate, macrocycle, or catenate: Dynamic topological control over subcomponent self-assembly

The aqueous reaction between equimolar amounts of 2-(2-(2-aminoethoxy)ethoxy)ethanamine, 1,10-phenanthroline-2,9-dialdehyde and copper(I) produced a dimeric helical macrocycle in quantitative yield. This ring could also be generated by the addition of two equivalents of the diamine to an acyclic helicate containing four mono-imine residues: A transimination occurred, the chelate effect being implicated as a driving force. In the case of a helicate containing mono-imines derived from anilines, the substitution of diamine for monoamine was reversible upon lowering the pH. The aliphatic diamine was protonated at a higher pH than the arylamine, which left the arylamine free for incorporation instead of the alkyl diamine. This reaction thus opened the possibility of switching between closed macrocyclic and open helicate topologies by changing the pH. An additional closed topology became accessible through the use of a diamine that incorporates two rigid phenylene spacer groups between a flexible chain and the imine-forming nitrogen atoms. The resulting catenate consists of a pair of topologically interlinked macrocycles. The presence of the phenylene groups appeared to dictate the topology of the final product, making the formation of a single macrocycle energetically disfavoured.     

Designing multistep transformations using the Hammett equation: imine exchange on a copper(I) template

Herein, we quantify how imine exchange may be used to selectively transform one metallo-organic structure into another. A series of imine exchange reactions were studied, involving a set of 4-substituted anilines, their 2-pyridylimines and 1,10-phenanthrolyl-2,9-diimines, as well as the copper complexes of these imine ligands. Electron-rich anilines were found to displace electron-poor anilines in all cases. Linear free energy relationships (LFERs) were discovered connecting the electron-donating or -withdrawing character of the 4-substituent of an aniline, as measured by the Hammett sigma(para) parameter, to that aniline's ability to compete with unsubstituted aniline to form imines. The quality of these LFERs allowed for quantitative predictions: to obtain the desired degree of selectivity in an imine exchange between anilines A and B, the required sigma(para) differential could be predicted using a variant of the Hammett equation, log(K(AB)) = rho(sigma(A) - sigma(B)). We validated this methodology by designing and executing a three-step transformation of a series of copper(I)-containing structures. Each step proceeded in predictably high yield, as calculated from sigma differentials. At each step in the series of transformations, macrocyclic structures could be created or destroyed through the selection of mono- or di-amines as subcomponents. The same methodology could be used to predict the formation of a diverse dynamic library of helicates from a set of four aniline precursors, as well as the collapse of this library into one helicate upon the addition of a fifth aniline.     

Solid-state self-assembly of polymeric double helicates leading to linear arrays of silver(I) ions and reversible strand/double helix interconversion in solution

Reaction of a bent py-hyz-pym-hyz-pym 1 and of a linear py-hyz-py-hyz-pym 3 (py=pyridine; pym=pyrimidine; hyz=hydrazone) ligand strands with silver(I) tetrafluoroborate in CH(3)NO(2) generates double-helical dinuclear 2 and trinuclear 4 complexes. These complexes form polymeric, highly ordered solid-state structures, with wirelike, linear continuous or discontinuous polycationic Ag(n) (+) arrays with Ag--Ag distances of 2.78 to 4.42 A. Ligand 5, an isomer of 1, is found to yield a [2x2] grid-type complex 6. Titration experiments reveal the formation of linear rack-type dinuclear species from 1 and 5. Acid-base modulated, reversible interconversion between strand 1 and double helicate 2 may be achieved by using tren as a competing complexing agent (tren=N(CH(2)CH(2)NH(2))(3)). Progressive addition of silver(I) ions to a 1:1 mixture of 1 and 5 leads to the preferential formation of the double helicate 2 over the grid complex 6, illustrating a process of self-organisation with selection of the correct ligand.     

Copper(I)‐Catalyzed Cycloaddition of Azides to Multiple Alkynes: A Selectivity Study Using a Calixarene Framework

Copper(I)‐catalyzed addition of limited amounts of azides to multiple alkynes, which led to statistical mixtures of triazole/acetylene derivatives or, in other cases, resulted in preferred formation of multiple triazoles, was studied at pre‐organizable calixarene platforms bearing up to four propargyl groups. Depending on calixarene structures and reaction conditions, the unprecedented specific or selective formation of exhaustively triazolated calixarenes or a complete loss of the selectivity were observed. Both autocatalytic copper activation and a local copper(I) concentration increase due to copper–triazole complexation were thoroughly studied as the most expected reasons for the selectivity and both were disproved. Mixed triazolated/propargylated calixarenes and their copper(I) complexes proved not to be involved in the cascade‐like process that was modeled to be driven by an intramolecular transfer of two copper(I) ions from a just‐formed binuclear copper intermediate to the adjacent acetylene unit.     

Supramolecular circular helicates formed by destabilisation of supramolecular dimers

The effect of changes in the angles at the connection points of linear/circular helicates is explored as a route to control the nuclearity and architecture of metallo-supramolecular arrays. This effect is probed by changing the geometry of the metal centre used to assemble bis-pyridylimine ligands that contain a 1,3-bis(aminomethyl) benzene spacer group. Tetrahedral metal ions favour linear dimers, whereas octahedral nickel(II) predominantly gives a triangular circular helicate. Five-coordinate copper(II) falls in the middle of these extremes and results in the formation of solvent-dependent mixtures of dimer and trimer. The trinuclear, triangular, circular helicate structures, which result from coordination to copper(II) and nickel(II), are structurally characterised by X-ray crystallography and reveal that the units can aggregate into hexagonal arrays that contain anion-filled tube-like channels in the solid state.     

Endogenous arene hydroxylation promoted by copper(I) cluster helicates

A novel neutral triple-stranded hexanuclear copper(I) cluster helicate [Cu(I)(6)L(3)]·2CH(3)CN derived from a thiosemicarbazone ligand could be synthesized and crystallographically characterized. The MALDI mass spectrum of this complex suggests that the tetranuclear copper(I) cluster helicate [Cu(I)(4)L(2)] is also present in solution. These copper(I) cluster helicates are capable, in the presence of O(2), of hydroxylating the arene linker of their supporting ligand strands. The resulting dinuclear complex [Cu(II)(2)L'(OH)] is formed by two copper(II) centers, a new ligand arising from the hydroxylation reaction, and one hydroxide group. The magnetic investigation of this compound shows a strong antiferromagnetic coupling between the two Cu(II) centers. The kinetic studies for the hydroxylation process show values of ΔH(≠)=-70 kJ mol(-1), similar to those mediated by the tyrosinase enzymes.     

Kinetic and thermodynamic selectivity in subcomponent substitution

Within assemblies prepared by metal-templated imine condensation, one amine residue (subcomponent) may be replaced with another through substitution reactions. Proton transfer from a more to a less acidic amine may be used as the driving force for substitution. Herein, we detail the development of a set of selectivity rules to predict the outcome of subcomponent substitution reactions when several different substrates are present. When both iron and copper complexes were present, substitution occurred preferentially at imines bound to copper. This preference was kinetic in nature in the absence of a chelating amine subcomponent: The different amine residues were found to scramble between the copper and iron complexes following an initial clean substitution at the copper-bound imine. When both chelating and nonchelating amine subcomponents were present, the preference became thermodynamic in nature. Only the nonchelating amine was substituted and no evidence of scrambling was found after the reaction mixture was heated to 50 degrees C for several days. This thermodynamic selectivity, based on the chelate effect, operated in mixtures of Cu(I) and Fe(II) complexes, and in systems containing only Fe(II) complexes.     

Ligand Reprogramming in Dinuclear Helicate Complexes: A Consequence of Allosteric or Electrostatic Effects?

The ditopic ligand 6,6'-bis(4-methylthiazol-2-yl)-3,3'-([18]crown-6)-2,2'-bipyridine (L(1)) contains both a potentially tetradentate pyridyl-thiazole (py-tz) N-donor chain and an additional "external" crown ether binding site which spans the central 2,2'-bipyridine unit. In polar solvents (MeCN, MeNO(2)) this ligand forms complexes with Zn(II), Cd(II), Hg(II) and Cu(I) ions via coordination of the N donors to the metal ion. Reaction with both Hg(II) and Cu(I) ions results in the self-assembly of dinuclear double-stranded helicate complexes. The ligands are partitioned by rotation about the central py--py bond, such that each can coordinate to both metals as a bis-bidentate donor ligand. With Zn(II) ions a single-stranded mononuclear species is formed in which one ligand coordinates the metal ion in a planar tetradentate fashion. Reaction with Cd(II) ions gives rise to an equilibrium between both the dinuclear double-stranded helicate and the mononuclear species. These complexes can further coordinate s-block metal cations via the remote crown ether O-donor domains; a consequence of which are some remarkable changes in the binding modes of the N-donor domains. Reaction of the Hg(II)- or Cd(II)-containing helicate with either Ba(2+) or Sr(2+) ions effectively reprogrammes the ligand to form only the single-stranded heterobinuclear complexes [MM'(L(1))](4+) (M=Hg(II), Cd(II); M'=Ba(2+), Sr(2+)), where the transition and s-block cations reside in the N- and O-donor sites, respectively. In contrast, the same ions have only a minor structural impact on the Zn(II) species, which already exists as a single-stranded mononuclear complex. Similar reactions with the Cd(II) system result in a shift in equilibrium towards the single-stranded species, the extent of which depends on the size and charge of the s-block cation in question. Reaction of the dicopper(I) double-stranded helicate with Ba(2+) shows that the dinuclear structure still remains intact but the pitch length is significantly increased.     

Localization and delocalization in a mixed-valence dicopper helicate

The coordination chemistry of the tetradentate pyridyl-thiazole (py-tz) N-donor ligand 6,6'-bis(4-phenylthiazol-2-yl)-2,2'-bipyridine (L1) has been investigated. Reaction of L1 with equimolar copper(II) ions results in the formation of the single-stranded mononuclear complex [Cu(L1)(ClO4)2] (1), whereas reaction with copper(I) ions results in the double-stranded dinuclear helicate [Cu2(L1)2][PF6]2 (2). Both complexes were characterized by X-ray crystallography, UV-vis spectroscopy, and electrospray ionization mass spectroscopy (as well as 1H NMR spectroscopy for diamagnetic 2). Complex 2 is redox-active and, upon one-electron oxidation, forms the stable tricationic mixed-valence helicate [Cu2(L1)2]3+ (3). This species can also be prepared in situ by combining [Cu(MeCN)4][BF4], [Cu(H2O)6][BF4]2, and L1 in a 1:1:2 ratio in nitromethane. X-ray crystallographic analysis of 3 provides structural evidence for the presence of an internuclear Cu-Cu bond, with an even distribution of spin density across the two Cu centers. Room-temperature UV-vis spectroscopy is consistent with this finding; however, frozen-glass EPR spectroscopic investigations suggest solvatochromic behavior at 110 K, with the [Cu2]3+ core varying from localized to delocalized depending on the solvent polarity.     

An iminoboronate construction set for subcomponent self-assembly

Recently we have demonstrated a series of systems in which complex structures were created from simple amine and aldehyde subcomponents by copper(I)-templated imine bond formation. We describe herein the extension of this "subcomponent self-assembly" concept to the generation of structures based upon the iminoboronate ester motif. Equimolar amounts of diol, amine, and 2-formylphenylboronic acid reacted by reversible B-O and C=N bond formation to generate iminoboronate esters, as has recently been reported by James et al. (Org. Lett. 2006, 8, 609-612). The extent of ester formation was shown to depend upon a number of factors. The exploration of these factors allowed rules and predictions to be formulated governing the self-assembly process. These rules allowed the construction of more complex structures containing multiple boron atoms, including a trigonal cage containing six boron centers, as well as pointing the way to the construction of yet more intricate architectures. The lability of the B-O and C=N bonds also allowed different diol and amine subcomponents to be substituted within these structures. Selection rules were also determined for these substitution reactions, allowing the products to be predicted based upon the electronic properties of the diols and diamines employed. These results thus demonstrate the generality of the subcomponent self-assembly methodology through its application to a new dynamic covalent system.     

A Fluxional Copper Acetylide Cluster in CuAAC Catalysis

A molecularly defined copper acetylide cluster with ancillary N‐heterocyclic carbene (NHC) ligands was prepared under acidic reaction conditions. This cluster is the first molecular copper acetylide complex that features high activity in copper‐catalyzed azide–alkyne cycloadditions (CuAAC) with added acetic acid even at ?5 °C. Ethyl propiolate protonates the acetate ligands of the dinuclear precursor complex to release acetic acid and replaces one out of four ancillary ligands. Two copper(I) ions are thereby liberated to form the core of a yellow dicationic C₂‐symmetric hexa‐NHC octacopper hexaacetylide cluster. Coalescence phenomena in low‐temperature NMR experiments reveal fluxionality that leads to the facile interconversion of all of the NHC and acetylide positions. Kinetic investigations provide insight into the influence of copper acetylide coordination modes and the acetic acid on catalytic activity. The interdependence of “click” activity and copper acetylide aggregation beyond dinuclear intermediates adds a new dimension of complexity to our mechanistic understanding of the CuAAC reaction.     

Designing Artificial 3D Helicates: Unprecedented Self‐Assembly of Homo‐octanuclear Tetrapods with Europium

Herein, we report on the rational design, preparation and characterization of a novel homo‐octanuclear helicate, which results from a spatial extension of the central tetranuclear platform. The 3D supramolecular assembly is obtained by complexing europium(III) with a new hexatopic tripodal ligand. The isolated octanuclear helicate is fully characterized by different methods clearly evidencing the structure predicted with molecular modelling. The ligand preorganization plays a crucial role in a successful self‐assembly process and induces the formation of a well‐defined triple‐stranded helical structure. This prototypal octanuclear edifice accommodating functional lanthanides within a 3D scaffold offers attractive perspectives for further applications.     

A novel route to copper(II) detection using 'click' chemistry-induced aggregation of gold nanoparticles

A simple colorimetric method for the detection of copper ions in water is described. This method is based on the 'click' copper(I)-catalyzed azide-alkyne cycloaddition reaction and its use in promoting the aggregation of azide-tagged gold nanoparticles by a dialkyne cross-linker is described. Nanoparticle cross-linking, evidenced as a colour change, is used for the detection of copper ions. The lowest detected concentration by the naked eye was 1.8 μM, with the response linear with log(concentration) between 1.8-200 μM. The selectivity relative to other potentially interfering ions was evaluated.     

Predetermined Chirality at Metal Centers

Asymmetric synthesis in coordination chemistry was described very clearly by Smirnoff in 1920, but, contrary to the development in organic chemistry, it was almost completely neglected for several decades. The interest in chirality in coordination chemistry (see the stereoview of [Ru(bpy)₃]²⁺) has increased rapidly in recent times as a consequence of developments in several fields where chirality is important (polynuclear systems, supramolecular structures, and enantioselective catalysis). Here we show many examples of how, through the choice of ligand, the configuration of a metal center or the chirality of a helicate can be predetermined.     

A triple helix of double helicates: three hierarchical levels of self-assembly in a single structure

The bis-bidentate bridging ligand L reacts with Ag(I) ions to form a conventional dinuclear [Ag(2)L(2)](2+) double helicate; individual double helicate units assemble via Ag···Ag interactions into infinite chains, three of which wrap around a central spine of anions to give a triple helical braid, which is therefore an infinite triple helix composed of molecular double helicate subunits.     

Synthesis of [5]rotaxanes containing bi- and tridentate coordination sites in the axis

A new example of a linear [5]rotaxane has been synthesized by using the traditional "gathering-and-threading" approach but based on an unusual axle incorporating a symmetrical bis(bidentate) chelating fragment built on a 4,7-phenanthroline core. The stoppering reaction is particularly noteworthy since, instead of using a trivial bulky stopper as precursor to the blocking group, two semistoppered copper-complexed [2]pseudorotaxanes (namely [2]semirotaxanes) are used, which leads to the desired [5]rotaxane in good yield. The efficiency of the method relies on the use of "click" chemistry, with its very mild conditions, and on the protection by a transition-metal (copper(I)) of the various coordinating groups present in the fragments to be interconnected (terpy and bidentate chelating groups), thus inhibiting potential detrimental side reactions during the copper-catalyzed stoppering reaction. Since the external fragments and the central core of the system contain tri- and bidentate chelating units, respectively, the axle of the final [5]rotaxane incorporates two types of coordinating units: two external terpy groups (terpy: 2,2':6',2'-terpyridine) and two central bidentate ligands. Such a situation enables the system to tidy two different metals centers, and to localize them in a priori well-defined positions. This is what was observed when mixing the free ligand with a mixture of Zn(2+) and Li(+) : the zinc(II) ions were unambiguously shown to occupy the external sites, whereas the Li(+) cations were found in the central part of the [5]rotaxane. An X-ray diffraction study carried out on a [3]pseudorotaxane, the axis of which is similar to the central part of the [5]rotaxane axle, demonstrates that Zn(2+) is clearly five-coordinate, the fifth ligand being a counterion, even when the coordination site of the pseudorotaxane is designed for four-coordinate metals, which is in marked contrast with copper(I) or Li(+) .     

Chiral Heteroditopic Baskets Designed from Triazolated Calixarenes and Short Peptides

Cone calix[4]arenes and calix[6]arenes bearing two, three, and four short peptide units each having two chiral carbon atoms were prepared. The syntheses were performed by using an efficient modular approach that includes the Ugi preparation of the azido‐peptide followed by its reactions with the propargylated calixarenes under CuAAC (Cu^I‐catalyzed azide–alkyne cycloaddition) conditions. The three novel multitopic hosts were probed for their ability to bind metal ions by UV titration, and showed the highest complexation efficiency towards copper(II) and lead(II). These two cations possessed quite different complexation modes with copper(II) bound predominantly by multiple‐triazole sites, in contrast to lead(II), which is stabilized mainly by multiple interactions with amide groups of the peptide units. Circular dichroism data for the free chiral hosts, their equimolar mixtures with copper(II) perchlorate and lead(II) perchlorate, and for tertiary mixtures of all three compounds showed the formation of mono‐ and binuclear complexes, or a switching behavior, depending on the structure of the host and the addition order of the cations.