Synthesis and crystal structure of diaquabis(nitrato-O,O′)ethanoliron(III) 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane trinitrate

A new complex salt diaquabis[nitrato-O,O′)ethanoliron(III)] 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane trinitrate, [Fe(NO₃)₂(EtOH)(H₂O)₂]⁺ · [H₂(Crypt-222)]²⁺ · (NO ₃ ^? )₃, is synthesized. Its crystal structure has been determined by X-ray diffraction analysis: space group P 2₁/c, a = 14.147 Å, b = 11.443 Å, c = 23.127 Å, β = 103.66°, Z = 4. The structure is solved by a direct method and refined by the full-matrix least-squares method in the anisotropic approximation to R = 0.064 for 5050 independent measured reflections (CAD-4 automated diffractometer, λMoK _α radiation). In the [Fe(NO₃)₂(EtOH)(H₂O)₂]⁺ complex cation, the coordination polyhedron of the Fe³⁺ cation is a distorted pentagonal bipyramid with its base formed by four O atoms of two bidentate NO ₃ ^? ligands, one O atom of the water molecule, and its axial vertices occupied by the O atoms of the EtOH molecule and the second water molecule. The alternating complex cations and NO ₃ ^? anions multiplied by the 2₁ axis are hydrogen-bonded into infinite chains running along the y axis.     

Synthesis and crystal structure of hexa(nitrato-<Emphasis Type="Italic">O,O</Emphasis>′)dysprosium(III) Bis[4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane] nitrate dihydrate

A new complex salt 2[H₂(Crypt-222)]²⁺ · [Dy(NO₃)₆]^3? · NO ₃ ^? · 2H₂O is synthesized, and its crystal structure is studied by X-ray diffraction analysis (space group R \(\bar 3\), a = 11.445 Å, c = 38.981 Å, Z = 3; direct method, full-matrix least-squares method in the anisotropic approximation, R = 0.027 for 3555 independent reflections; CAD4 automated diffractometer, λMoK _α radiation). The [Dy(NO₃)₆]^3? anion and 2.2.2-cryptand dication lie on axis \(\bar 3\). The [Dy(NO₃)₆]^3? ligand in the [Dy(NO₃)₆]^3? anion is disordered. The Dy³⁺ cation has slightly distorted octahedral coordination with all six split vertices at the O atoms of the six symmetrically equivalent disordered NO ₃ ^? ligands.     

Isomorphous crystal structures of 4,7,13,16,21,24-hexaoxo-1,10-diaziniabicyclo[8.8.8]·hexacosane bis(tribromide) and bis(bromoiodide)

Two compounds, 7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane bis(tribromide) and bis(bromodiiodide) — [H₂(Crypt-222)]²⁺·2Br ₃ ^? (I) and [H₂(Crypt-222)]²⁺·1.45(BrI₂)^?·0.4(Br₂I)^?·0.15 I ₃ ^? (II) — are prepared and characterized by single crystal XRD; the refinement of the second compound was more accurate. Isomorphous monoclinic structures (I, space group C2/c, Z = 4, a = 12.090, b = 15.833 Å, c = 15.732 Å, β = 95.83°; II, a = 12.548 Å, b = 16.417 Å, c = 15.748 Å, β = 94.53°) are solved by a direct method and refined in the anisotropic full-matrix approximation to R = 0.057 (I) and 0.044 (II) using all 2635 (I) and 2852 (II) measured independent reflections (automated CAD-4 diffractometer, λMoK _α). In the structures of I and II one of the trihalide anions sits at the inversion center i(000), and the second trihalide anion and the dication [H₂(Crypt-222)]²⁺ are situated at crystallographic axis 2. In the structure of II iodine is located in the center of trihalide anions, while the terminal atoms are disordered and are represented by a statistical combination of iodine and bromine atoms.     

4,7,13,16,21,24-Hexaoxa-1,10-Diazoniabicyclo[8.8.8]hexacosane Pentaaqua[Bis(nitrato-O,O′)]yttrium(III) Dichloride Nitrate: Synthesis and Crystal Structure

A complex salt, namely, 4,7,13,16,21,24-hexaoxa-1,10-diazoniabicyclo[8.8.8]hexacosane pentaaqua[bis(nitrato-O,O)]yttrium(III) dichloride nitrate [Y(NO₃)₂(H₂O)₅]⁺[H₂(Crypt-222)]²⁺2Cl^–NO^– ₃ (I) was synthesized and structurally characterized by X-ray diffraction analysis (triclinic crystal system, space group P31, a = 8.443(1) Å, c = 28.110(5) Å, Z = 2). The structure was solved by the direct method and refined by the full-matrix least-squares method in the anisotropic approximation to R = 0.072 from 2000 measured reflections (CAD4 automated diffractometer, CuK radiation). The crystal structure of I is highly disordered. All ions are located in crystallographic axes 3 and all but one Cl^– ion are disordered. In the [Y(NO₃)₂(H₂O)₅]⁺ complex cation, the coordination polyhedron of the Y atom (C.N. 9) is a distorted pentagonal bipyramid with two O atoms of two nitrato ligands as two bifurcate vertices and five O atoms of five water molecules as the base.     

Synthesis and structure of manganese(ii) coordination polymers with 1,4-diazabicyclo[2.2.2]octane N,N′-dioxide: solvent and template effects

Russian Chemical Bulletin - New metal-organic frameworks [Mn(DMF)2(odabco)2](ClO4)2 · H2O (1), [Mn(H2O)2? (HCOO)2] · odabco (2), and [Mn(Hodabco)2(odabco)3](NO3)4 (3) were...     

Disordered Crystal Structure of 4,7,13,16,21,24‐hexaoxa‐1,10‐diazabicyclo[8.8.8]hexacozane perchlorate

Crystals of the ionic complex (salt) of 4,7,13,16,21,24hexaoxa 1,10diazabicyclo[8.8.8]hexacozane perchlorate, [H₂(Crypt2.2.2)]²⁺ · 2ClO₄ ^-, were synthesized and studied by Xray structural analysis: space group C2/c, a = 20.198(3), b = 10.119(2), c = 12.938(2), = 90.97(1)°, Z = 4, 3030 measured independent reflections, R = 0.067. In these crystals, all atoms of the 2.2.2 dication are disordered over two positions with occupancies of 0.518(4) and 0.482(4). Two conformations of the disordered 2.2.2 dication are such that two H atoms at two nodal N atoms point to its cavity.     

Preparation,crystal structure and luminescence of lanthanide coordination polymers with 2,2′-dimethyl-4,4′-bipyridine-N,N′-dioxide

Four coordination polymers of the bidentate ligand 2,2′-dimethyl-4,4′-bipyridine-N,N′-dioxide (L), [La(L)(NO₃)₃(H₂O)] _n (1), {[Gd₂(L)₃(NO₃)₆]·6H₂O} _n (2), {[Sm(L)₂(H₂O)₄]·3ClO₄·2L·4H₂O} _n (3) and {[Nd(L)₂(H₂O)₄]·3ClO₄·2L·4H₂O} _n (4) have been synthesized by the diffusing solvent mixture method. Results of X-ray diffraction analysis reveal that 1, with a Ln/L stoichiometry of 1:1, displays a rare 3-D three-fold interpenetrating diamondoid framework, while 2 has a Ln/L stoichiometry of 1:1.5 and exhibits a polycatenane network with a {8²,10} topology and large channels accommodated by water. Complexes 3 and 4, with Ln/L stoichiometry of 1:2, have 3-D two-fold interpenetrating diamondoid structures and large voids. Nonlinear optical property of 2 and luminescence of 3 were also investigated.     

Synthesis of N- and N,N′-coordinated derivatives of 3,7-dithia-1,5-diazabicyclo[3.3.0]octanes and their fungicidal activity

Possibility of obtaining water-soluble N- and N,N′-coordinated adducts by reacting 3,7-dithia-1,5-diazabicyclo[3.3.0]octane with methyl iodide and Brønsted (HCl, HBr) and Lewis (AlCl₃) acids was examined. The fungicidal activity of 3,7-dithia-1,5-diazabicyclo[3.3.0]octane and its water-soluble adducts with hydrobromide and methyl iodide against a number of microscopic fungi affecting cultivated plants and various materials was studied.     

Synthesis of a C60 complex withN,N,N′,N′-tetramethyl-p-phenylenediamine and its crystal structure

The complex of fullerene C₆₀ withN,N,N,N-tetramethyl-p-phenylenediamine (TMPD) was synthesized and studied by X-ray analysis.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1285–1287, May, 1996. 1996     

Synthesis and crystal structures of copper and manganese complexes withN,N′-dibenzyl-1,10-phenanthroline-2,9-dimethylamine

The new ligand, N,N-dibenzyl-1,10-phenanthroline-2,9-dimethylamine trihydrochloric acid monohydrate (L · 3HCl·H ₂ O), has been synthesized and characterized. Complexes of the ligand (L) with Cu^II and Mn^II were prepared and their crystal structures were determined. The copper ion is five-coordinated via three nitrogen atoms of the ligand and two chloride ions, while the manganese ion is six-coordinated by three nitrogens of the ligand, two chloride ions and one water molecule. In both complexes, the ligand behaves in a tri-dentate fashion and the uncoordinated nitrogen of the other arm is protonated.     

Synthesis, crystal structure, and thermal properties of N,N′-di(diethoxythiophosphoryl)-1,4-phenylenediamine

The title compound N,N′-di(diethoxythiophosphoryl)-1,4-phenyl-enediamine was synthesized by the reaction of diethoxythiophosphoryl chloride with p-phenylenediamine and characterized by elemental analysis, IR, and ¹H NMR spectra. Its crystal structure was determined by X-ray diffraction analysis and the thermal property was studied by TG analysis. The relative molecular weight of the title compound is 412.42. The crystal structure belongs to the orthorhombic, Pbca space group, with a = 0.86936(16) nm, b = 1.2787(2) nm, c = 1.8897(3) nm, β = 90°, V = 2.1006(7) nm³, Z = 8, Dc = 1.304 g/cm³, μ(Mo Kα) = 0.425 mm⁻¹, F(000) = 872, S = 1.052, the final R = 0.0628 and wR = 0.1860 for 1852 observed reflections with I>2σ(I). The X-ray diffraction analysis demonstrates that the crystal structure is centrosymmetric. The weak N-H⋯S intramolecular hydrogen bonds were observed to link the molecules into sheets. The TG analysis shows that the title compound has good thermal stability and char forming capability and its fire retardation for polyacrylonitrile reveals that the compound is an excellent intumescent fire retardant. __________ Translated from Acta Chimica Sinica, 2007, 65(18): 2034–2038 [译自: 化学学报]     

Synthesis ofN,N′-ditosyl-8, 19-dimethoxy-2,5-diaza-[6.1]-naphthyl-cyclophane: crystal and molecular structure of its 1∶1 chloroform solvate

The title compound, C₄₁H₄₀N₂O₆S₂, has been synthesised in good yield and was found to form a 11 inclusion compound with CHCl₃ and other organic solvents. The crystal and molecular structure of the CHCl₃ solvate has been determined by single crystal X-ray analysis and refined to anR-value of 0.034 for 3229 reflections. The compound is monoclinic, space groupP2₁/c, witha=15.316(1),b=14.515(1),c=18.720(3) Å, =101.98(1)^o, andZ=4. One molecule of chloroform is included in the crystal lattice. Supplementary data relevant to this article have been deposited with the British Library as Supplementary Publication No. SUP 82146 (9 pp.).     

Zinc(II) metal-organic frameworks with 1,4-diazabicyclo[2.2.2]octane N,N′-dioxide: control of the parameters of the cationic porous framework and optical properties

Russian Chemical Bulletin - Four zinc metal-organic frameworks (MOFs) with 1,4-diazabicyclo[2.2.2]octane N,N′-dioxide (odabco) as a bridging ligand were synthesized by varying the solvent and...     

Synthesis and crystal structure study of 2′-Se-adenosine-derivatized DNA

The selenium derivatization of nucleic acids is a novel and promising strategy for 3D structure determination of nucleic acids.Selenium can serve as an excellent anomalous scattering center to solve the phase problem,which is one of the two major bottlenecks in macromolecule X-ray crystallography.The other major bottleneck is crystallization.It has been demonstrated that the incorporated selenium functionality at the 2′-positions of the nucleosides and nucleotides is stable and does not cause significant st...     

Synthesis and crystal structure of a 2-D yttrium coordination network with propylenediamine-N,N,N′,N′-tetraacetic acid

A 2-D binuclear coordination polymer, {[Y^III(Hpdta)(H₂O)]_2?·?6H₂O} _n (H₄pdta?=?propylenediamine-N,N,N′,N′-tetraacetic acid), has been synthesized through direct hydrothermal reaction and characterized by infrared spectrum and thermal analysis. Single-crystal X-ray diffraction reveals that Y(III) is eight-coordinate of almost standard square antiprismatic polyhedron.     

Synthesis,crystal structure and conformation of N-acetyl-Cα,α-diethylglycine-N′-methylamide

Summary Synthesis and X-ray structure analysis of N-acetyl-^,-diethylglycine-N-methylamide [CH₃-Co-NH-C(C₂H₅)₂-CO-NHCH₃] are described. The compound was obtained from the corresponding N-acetyl derivative [CH₃-CO-NH-C(C₂H₅)₂-COOH] through the mixed anhydride procedure. It crystallizes as monohydrate (C₉H₁₈N₂O₂·H₂O) in space group P2₁/c,a=7.139(1),b=11.823(2),c=15.778(3) Å, =122.23(1)°,V=1126.53 ų,D _m=1.20 Mgm^–3 (room temperature),R=0.046 for 1523 reflections. The crystal packing is dominated by two strong hydrogen bonds between the water molecule and two carbonyl oxygen atoms and two weak H-bonds to two amide-N-atoms of symmetry-equivalent molecules. The molecular conformation is closer to a 3₁₀-helix then ana-helix.

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Synthese, Kristallstruktur und Konformation von N-Acetyl-^,-diethylglycin-N-methylamid

Zusammenfassung Es wird über Synthese und die röntgenographische Strukturbestimmung von N-Acetyl-^,-diethylglycin-N-methyl-amid [CH₃-CO-NH-C(C₂H₅)₂-CO-NH-CH₃] berichtet. Die Verbindung wurde unter Anwendung der Methode der gemischten Anhydride aus dem entsprechenden N-Acetylderivat [CH₃-CO-NH-C(C₂H₅)₂-COOH] erhalten. Sie kristallisiert als Monohydrat (C₉H₁₈N₂O₂·H₂O) in der Raumgruppe P2₁/c mita=7.139(1),b=11.823(2),c=15.778(3) Å, =122.23(1)°,V=1126.53 ų,D _m=1.20 Mgm^–3,D _x=1.204 Mgm^–3 (Raumtemperatur).R=0.046 für 1523 Reflexe. Die Kristallpackung ist dominiert durch zwei starke H-Brücken vom Wassermolekül zu zwei Carbonylsauerstoffatomen sowie zwei schwachen H-Brücken zu zwei Amid-N-atomen symmetrieequivalenter Moleküle. Die Konformation des Peptidgerüstes ist näher einer 3₁₀ als einera-Helix.

     

Synthesis,crystal structure and photo-induced isomerization of [ N,N ′- bis (4-fluorobenzylidene) ethylenediamine]bromo(triphenylphosphine)copper(I) complex

Abstract

The electrochemical behavior of VOQ₂OH or [VOQ₂-OVOQ₂] (Q = 8-hydroxyquinohnate anion) has been investigated by cyclic voltammetry in acetonitnie solutions. Although both species exist simultaneously at every condition analyzed, they can be clearly differentiated by this method. The effect of trace amounts of water on the electrochemical behavior is also discussed.     

Synthesis,crystal structure and reactivity of trans-diaquo N,N′-ethylenebis-(3-methoxysalicylideneiminato)chromium(III)

A new chromium(III) Schiff base complex, [Cr(3-methoxysalen)(H₂O)₂]ClO₄, where salen=N,N-ethylenebis- (salicylideneimine), has been synthesized and characterized by spectroscopic techniques. Single crystal X-ray data reveals that the complex assumes a trans-diaquo structure with formulation [Cr(C₁₈H₂₂N₂O₆)]ClO₄ but, unlike in Cr (salen)(H₂O)₂ ⁺, the two trans-water molecules are equidistant from Cr^III. The effect of the substituent on the phenyl ring in respect of redox reactivity has been investigated. The kinetics of the oxidation of [Cr(Schiff base)- (H₂O)₂]ClO₄, where Schiff base=salen, (1) and 3-OMe-salen, (2) by PhOI has been studied. The bimolecular rate constant for the formation of the O=Cr^v Schiff base in case of (2) was four times faster than that of (1). The introduction of the OMe group substituent on the phenyl ring influences not only the structure and crystal packing, but also the reactivity of the complex and the electronic environment around the metal ion.     

Diiodo{N,N′-Bis(2,3,4-trimethoxybenzaldehyde)-ethylenediimine}mercury(II): Synthesis and crystal structure

Mononuclear mercury(II) complex [Hg((2,3,4-MeO-Ba)₂En)I₂] (I), where (2,3,4-MeO-Ba)₂En = N,N′-bis(2,3,4-trimethoxybenzaldehyde)ethylenediimine, has been synthesized and characterized by elemental analysis (C, H, and N) and confirmed by single-crystal X-ray diffraction analysis. The complex I crystallizes in the monoclinic system, with space group C2/c, having one symmetry-independent Hg²⁺ ion coordinated in distorted tetrahedral geometry by two N atoms of the Schiff base ligand and by two I atoms. The Schiff base ligand (2,3,4-MeO-Ba)₂En acts as a chelating ligand and coordinates via two N atoms to the mercury center and adopts an (E,E) conformation.     

Synthesis,crystal structure,and properties of 2H-4,8-dimethylfuro[2′,3′:5,6]naphtho[1,2-b]pyran-2-one,a novel DNA intercalator

Summary The furonaphthopyrone6, a novel DNA intercalator, was synthesized in two steps (ca. 56% overall yield) starting from naphthopyrone3. The new naphthopyrone derivatives4 and6 were fully characterized and the absorption and fluorescence spectroscopic properties of6 were determined. The dark interactions of furonaphthopyrone1 and6 with DNA have been investigated by a fluorescence quenching technique and their apparentScatchard binding constants were calculated. The crystal structure of6 was determined. The planarity of6 and the geometry of the active double bond between the -pyrone and the furan moieties of6 suggest that furonaphthopyrones are efficient monofunctional DNA intercalators.

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Synthese, Kristallstruktur und Eigenschaften von 2H-4,8-Dimethylfuro[2,3:5,6]naphtho[1,2-b]pyran-2-on, einem neuen DNA-Intercalator

Zusammenfassung Der neue DNA-Intercalator6 wurde, ausgehend vom Naphthopyron3, in zwei Stufen mit einer Gesamtausbeute vonca. 56% hergestellt. Die neuen Naphthopyronderivate4 und6 wurden vollständig charakterisiert; die Absorptions- und Fluoreszenzeigenschaften von6 wurden bestimmt. Die Dunkelwechselwirkungen von1 und6 mit DNA wurden mittels einer Fluoreszenzquenchtechnik untersucht; ihreScatchard-Bindungskonstanten wurden berechnet. Die Kristallstruktur von6 wurde bestimmt. Die Planarität von6 und die Geometrie der aktiven Doppelbindung zwischen dem -Pyron- und dem Furanteil von6 lassen erwarten, daß Furonaphthopyrone effiziente monofunktionelle DNA-Intercalatoren sind.