Structure and molecular conformation of tussah silk fibroin films treated with water–methanol solutions: Dynamic mechanical and thermomechanical behavior

The thermal response of tussah (Antheraea pernyi) silk fibroin films treated with different water–methanol solutions at 20°C was studied by means of dynamic mechanical (DMA) and thermomechanical (TMA) analyses as a function of methanol concentration and treatment time. The DMA curves of α-helix films (treated with ≥80% v/v methanol for 2 min and 100% methanol for 30 min) showed the sharp fall of storage modulus at about 190°C, and the loss peak in the range 207–213°C. The TMA curves were characterized by a thermal shrinkage at 209–211°C, immediately followed by an abrupt extension leading to film failure. Both storage and loss modulus curves significantly shifted upwards for β-sheet films, obtained by treatment with ≤60% methanol for 30 min. The loss peak exhibited a maximum at 236°C. Accordingly, the TMA shrinkage at above 200°C disappeared. The films broke beyond 330°C, failure being preceded by a broad contraction step. Intermediate DMA and TMA patterns were observed for the other solvent-treated films. The loss peak shifted to higher temperature (219–220°C), and a minor loss modulus component appeared at about 230°C. This coincided with the onset of a plateau region in the storage modulus curve. The TMA extension–contraction events in the range 200–300°C weakened, and the samples displayed a final broad contraction (peak temperature 326–338°C) before breaking. The DMA and TMA response of these films was attributed to partial annealing by solvent treatment, which resulted in the formation of nuclei of β-sheet crystallization within the film matrix. The increased thermal stability was probably due to the small β-sheet crystals formed, which acted as high-strength junctions between adjacent random coil and α-helix domains. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 2717–2724, 1998     

Synthesis of a model cyclic triblock terpolymer of styrene,isoprene, and methyl methacrylate

The synthesis of a model cyclic triblock terpolymer [cyclic(S‐b‐I‐b‐MMA] of styrene (S), isoprene (I), and methyl methacrylate (MMA) was achieved by the end‐to‐end intramolecular amidation reaction of the corresponding linear α,ω‐amino acid precursor [S‐b‐I‐b‐MMA] under high‐dilution conditions. The linear precursor was synthesized by the sequential anionic polymerization of S, I, and MMA with 2,2,5,5‐tetramethyl‐1‐(3‐lithiopropyl)‐1‐aza‐2,5‐disilacyclopentane as an initiator and amine generator and 4‐bromo‐1,1,1‐trimethoxybutane as a terminator and carboxylic acid generator. The separation of the unreacted linear polymer from the cyclic terpolymer was facilitated by the transformation of the unreacted species into high molecular weight polymers by the evaporation of the reaction solvent and the continuation of the reaction under high‐concentration conditions. The intermediate materials and the final cyclic terpolymer, characterized by size exclusion chromatography, vapor pressure osmometry, thin‐layer chromatography, IR and NMR spectroscopy, exhibited high molecular weight and compositional homogeneity. Dilute‐solution viscosity measurements were used as an additional proof of the cyclic structure. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 1476–1483, 2002     

On the exotherm of polyacrylonitrile. II. Examination of deuterated polymers

A series of α-, β,β-, and α,β,β-deuterium-labelled acrylonitrile monomers were prepared and polymerized. Secondary deuterium isotope effects on the polymerization and on the pyrolysis reactions that precede carbon fiber formation were observed. When deuterium is in the α-position, the polymerization rate is greater and the molecular weight is higher. It is proposed that either the propagation rate constant or both that constant and the termination rate constant are increased on deuterium substitution. In differential scanning calorimetry, the polyacrylonitrile exotherm occurs at higher temperatures and is narrower when deuterium is substituted at the α-position. On the other hand, the thermal gravimetric analysis activation energy for weight loss of polymer at temperatures below the acrylic exotherm is lower when deuterium is in the α-position, relative to the α-hydrogen polymers. As there is no correlation between the weight loss energy of activation and the various exotherm parameters, the weight loss energy of activation and the various exotherm parameters, the weight loss and exotherm are considered to be independent events. Examination of the distribution of deuterium substituted ammonia species evolved during 100–240°C thermal treatment of the α-and β, β-deuterated polyacrylonitriles provides a clear indication that both the α- and β-positions are directly involved in hydrogen migration to nitrogen, but the mechanism of ammonia generation remains unclear. © 1995 John Wiley & Sons, Inc.     

Quantum mechanical studies on model α‐pleated sheets

Pauling and Corey proposed a pleated‐sheet configuration, now called α‐sheet, as one of the protein secondary structures in addition to α‐helix and β‐sheet. Recently, it has been suggested that α‐sheet is a common feature of amyloidogenic intermediates. We have investigated the stability of antiparallel β‐sheet and two conformations of α‐sheet in solution phase using the density functional theoretical method. The peptides are modeled as two‐strand acetyl‐(Ala)₂‐N‐methylamine. Using stages of geometry optimization and single point energy calculation at B3LYP/cc‐pVTZ//B3LYP/6‐31G* level and including zero‐point energies, thermal, and entropic contribution, we have found that β‐sheet is the most stable conformation, while the α‐sheet proposed by Pauling and Corey has 13.6 kcal/mol higher free energy than the β‐sheet. The α‐sheet that resembles the structure observed in molecular dynamics simulations of amyloidogenic proteins at low pH becomes distorted after stages of geometry optimization in solution. Whether the α‐sheets with longer chains would be increasingly favorable in water relative to the increase in internal energy of the chain needs further investigation. Different from the quantum mechanics results, AMBER parm94 force field gives small difference in solution phase energy between α‐sheet and β‐sheet. The predicted amide I IR spectra of α‐sheet shows the main band at higher frequency than β‐sheet. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Metallocene copolymers of propene and 1‐hexene: The influence of the comonomer content and thermal history on the structure and mechanical properties

The relationships between the structure and properties have been established for copolymers of propylene and 1‐hexene synthesized with an isotactic metallocene catalyst system. The most important factor affecting the structure and properties of these copolymers is the comonomer content. The thermal treatment, that is, the rate of cooling from the melt, is also important. These factors affect the thermal properties, the degree of crystallinity, and therefore the structural parameters and the viscoelastic behavior. A slow cooling from the melt favors the formation of the γ phase instead of the α modification. Regarding the viscoelastic behavior, the β relaxation, associated with the glass‐transition temperature, is shifted to lower temperatures and its intensity is increased as the 1‐hexene content raises. The microhardness values are correlated with those of the storage modulus deduced from dynamic mechanical thermal analysis curves, and good linear relations have been obtained between these parameters. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 1253–1267, 2006     

The effect of amino acid backbone length on molecular packing: crystalline tartrates of glycine, β‐alanine, γ‐aminobutyric acid (GABA) and dl‐α‐aminobutyric acid (AABA)

We report a novel 1:1 cocrystal of β‐alanine with dl ‐tartaric acid, C₃H₇NO₂·C₄H₆O₆, (II), and three new molecular salts of dl ‐tartaric acid with β‐alanine {3‐azaniumylpropanoic acid–3‐azaniumylpropanoate dl ‐tartaric acid–dl ‐tartrate, [H(C₃H₇NO₂)₂]⁺·[H(C₄H₅O₆)₂]⁻, (III)}, γ‐aminobutyric acid [3‐carboxypropanaminium dl ‐tartrate, C₄H₁₀NO₂⁺·C₄H₅O₆⁻, (IV)] and dl ‐α‐aminobutyric acid {dl ‐2‐azaniumylbutanoic acid–dl ‐2‐azaniumylbutanoate dl ‐tartaric acid–dl ‐tartrate, [H(C₄H₉NO₂)₂]⁺·[H(C₄H₅O₆)₂]⁻, (V)}. The crystal structures of binary crystals of dl ‐tartaric acid with glycine, (I), β‐alanine, (II) and (III), GABA, (IV), and dl ‐AABA, (V), have similar molecular packing and crystallographic motifs. The shortest amino acid (i.e. glycine) forms a cocrystal, (I), with dl ‐tartaric acid, whereas the larger amino acids form molecular salts, viz. (IV) and (V). β‐Alanine is the only amino acid capable of forming both a cocrystal [i.e. (II)] and a molecular salt [i.e. (III)] with dl ‐tartaric acid. The cocrystals of glycine and β‐alanine with dl ‐tartaric acid, i.e. (I) and (II), respectively, contain chains of amino acid zwitterions, similar to the structure of pure glycine. In the structures of the molecular salts of amino acids, the amino acid cations form isolated dimers [of β‐alanine in (III), GABA in (IV) and dl ‐AABA in (V)], which are linked by strong O—H…O hydrogen bonds. Moreover, the three crystal structures comprise different types of dimeric cations, i.e. (A…A)⁺ in (III) and (V), and A⁺…A⁺ in (IV). Molecular salts (IV) and (V) are the first examples of molecular salts of GABA and dl ‐AABA that contain dimers of amino acid cations. The geometry of each investigated amino acid (except dl ‐AABA) correlates with the melting point of its mixed crystal.     

Phosphonates containing sulfur and selenium. Synthesis of vinylphosphonates bearing α-sulfenyl, α-selenenyl, α-sulfinyl and α-seleninyl moieties and studies on nucleophilic addition

The selenenylation of racemic and optically active α-phosphoryl sulfoxides is a key step leading efficiently to α-phosphorylvinyl sulfoxides or α-phosphorylvinyl selenides depending on the reaction conditions. Oxidation of α-phosphorylvinyl selenides and subsequent thermolysis of selenoxides afford alkynylphosphonates. Studies of the stereochemical course of nucleophilic addition to α-phosphoryl sulfoxides show high facial stereoselectivity of the reaction, however, epimerisation at the α-carbon atom leads to mixtures of diastereomers.     

Diffusion Measurements vs. Chemical Shift Titration for Determination of Association Constants on the Example of Camphor–Cyclodextrin Complexes

Measurements on camphor–cyclodextrin complexes reveal that precise association constants are more easily determined by chemical shift titration. Diffusion measurements using HR-DOSY allow easy following of the complex composition at different concentration ratios and estimation of the binding energy. Linear dependence of the diffusion coefficients on the molecular mass of free and associated cyclodextrins has been observed in D₂O. The solution structures of α- and β-cyclodextrin complexes of camphor in D₂O were deduced from intermolecular cross-relaxation data. Different preferential orientation in the 2:1 α-CD and 1:1 β-CD species have been derived in contrast to the loose 1:1 complex with γ-CD. Proton NMR chemical shift values proved to be much more sensitive to diastereomeric complex formation than diffusion coefficients.     

Nucleation characteristics of the α/β compounded nucleating agents and their influences on crystallization behavior and mechanical properties of isotactic polypropylene

Nucleation characteristics of isotactic polypropylene (iPP) nucleated by the α/β compounded nucleating agents (NAs) were investigated by wide‐angle X‐ray scattering, differential scanning calorimetry and mechanical testing. The results showed that the nucleation effect of the α/β compounded NAs depends on not only nucleation efficiency (NE) of individual β and α NAs and their ratios but also the processing conditions, especially the cooling rates. The nucleating characteristics of the α/β compounded NAs can be illustrated by competitive nucleation. The NA with high NE played a leading role during iPP crystallization even at a low weight ratio and at different cooling rates. The stiffness and toughness of iPP can be simultaneously improved by using suitable compositions at the appropriate ratios. Finally, the nonisothermal crystallization kinetics of iPP nucleated with the α/β compounded NAs was described by Caze method and the crystallization activation energy of nucleated iPP was calculated by Kissinger equation. The result indicated that the crystal growth pattern of nucleated iPP was heterogeneous nucleation followed by three‐dimension spherical growth. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 653–665, 2010     

The effect of annealing on the structure and relaxation processes of vinyl alcohol–ethylene copolymers

An annealing process has been applied to three samples of vinyl alcohol–ethylene (VAE) copolymers, richer in the former comonomer. The effect of such a process on the structure and on the relaxation mechanisms is studied. The structure of the three VAE copolymers has changed slightly. Nevertheless, the viscoelastic relaxation processes have been significantly affected for the thermal treatment. Two additional relaxations have appeared: one of them at temperatures above the relaxation associated to the glass transition, and the other at temperatures below the β mechanism of these copolymers. The temperature location, intensity, and apparent activation energy of the distinct relaxations found are discussed and compared with those in the original copolymers and the homopolymers, poly(vinyl alcohol) and polyethylene. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 39: 1–12, 2001     

Orientation of semiflexible biopolymers in a magnetic field

A theory is presented to explain the stretching and orientation of a semiflexible chain such as the biopolymeric filamentous actin and deoxyribonucleic acid in a magnetic field. Both dilute and concentrated solutions are considered. The theory predicts the requirement of a high magnetic field to achieve a high degree of orientation in a dilute solution. The experimental value of the order parameter for a dilute, polydisperse F‐actin solution has been compared with the theoretical value. On the other hand, a molecular field (nematic liquid crystal) which exists in a concentrated solution can achieve the same effects of stretching and orientation and can be assisted by a magnetic field. Sources of diamagnetic anisotropy in biopolymers have been cited. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 3256–3270, 2000     

Synthesis,Olfactory Evaluation,and Determination of the Absolute Configuration of the 3,4‐Didehydroionone Stereoisomers

The synthesis of 3,4‐didehydroionone isomers 4 , (+)‐ 6 , and (?)‐ 6 and of 3,4‐didehydro‐7,8‐dihydroionone isomers 5 , (+)‐ 7 , and (?)‐ 7 was accomplished starting from commercially available racemic α‐ionone ( 1 ). Their preparation of the racemic forms 4 – 7 was first achieved by mean of a number of chemo‐ and regioselective reactions (Schemes 1 and 2). The enantio‐ and diastereoselective lipase‐mediated kinetic acetylation of 4‐hydroxy‐γ‐ionone ( 10a / 10b ) provided 4‐hydroxy‐γ‐ionone (+)‐ 10a /(±)‐ 10b and (+)‐4‐(acetyloxy)‐γ‐ionone ((+) 12b ) (Scheme 3). The latter compounds were used as starting materials to prepare the 3,4‐didehydro‐γ‐ionones (+)‐ and (?)‐ 6 and the 3,4‐didehydro‐7,8‐dihydro‐γ‐ionones (+)‐ and (?)‐ 7 in enantiomer‐enriched form. The absolute configuration of (+)‐ 12b was determine by chemical correlation with (+)‐(6S)‐γ‐ionone ((+)‐ 3 ) and with (?)‐(6S)‐α‐ionone ((?)‐ 1 ) therefore allowing to assign the (S)‐configuration to (+)‐ 6 and (+)‐ 7 . Olfactory evaluation of the above described 3,4‐didehydroionone isomers shows a significant difference between the enantiomers and regioisomers both in fragrance feature and in detection threshold (Table).     

HPLC enantioseparation of α,α‐diphenyl‐2‐pyrrolidinemethanol and methylphenidate using a chiral fluorescent derivatization reagent and its application to the analysis of rat plasma

Enantioseparation of α,α‐diphenyl‐2‐pyrrolidinemethanol (D2PM) and methylphenidate (MPH; Ritalin^®) using (R)‐(?)‐4‐(N,N‐dimethylaminosulfonyl)‐7‐(3‐isothiocyanatopyrrolidin‐1‐yl)‐2,1,3‐benzoxadiazole as the chiral derivatization reagent has been achieved for the first time, and a simple, reliable detection method using HPLC with fluorescence detection has been developed. D2PM and MPH have been derivatized with (R)‐(?)‐4‐(N,N‐dimethylaminosulfonyl)‐7‐(3‐isothiocyanatopyrrolidin‐1‐yl)‐2,1,3‐benzoxadiazole at 55°C for 15 min. The derivatives of D2PM and MPH have been separated, completely and rapidly, using a reversed‐phase system within 16 min (resolution factor (R_s)=1.60 and 2.53, respectively). The detection limits of (R)‐ and (S)‐D2PM were found to be 6.8 and 13 ng/mL, respectively, and those of D ‐ and L ‐threo‐MPH were 61 and 66 ng/mL, respectively (S/N=3). The proposed method was successfully applied to the analysis of rat plasma, where the rats were separately dosed with D2PM and MPH (Ritalin).     

Extension of the CHARMM general force field to sulfonyl‐containing compounds and its utility in biomolecular simulations

Presented is an extension of the CHARMM General Force Field (CGenFF) to enable the modeling of sulfonyl‐containing compounds. Model compounds containing chemical moieties such as sulfone, sulfonamide, sulfonate, and sulfamate were used as the basis for the parameter optimization. Targeting high‐level quantum mechanical and experimental crystal data, the new parameters were optimized in a hierarchical fashion designed to maintain compatibility with the remainder of the CHARMM additive force field. The optimized parameters satisfactorily reproduced equilibrium geometries, vibrational frequencies, interactions with water, gas phase dipole moments, and dihedral potential energy scans. Validation involved both crystalline and liquid phase calculations showing the newly developed parameters to satisfactorily reproduce experimental unit cell geometries, crystal intramolecular geometries, and pure solvent densities. The force field was subsequently applied to study conformational preference of a sulfonamide based peptide system. Good agreement with experimental IR/NMR data further validated the newly developed CGenFF parameters as a tool to investigate the dynamic behavior of sulfonyl groups in a biological environment. CGenFF now covers sulfonyl group containing moieties allowing for modeling and simulation of sulfonyl‐containing compounds in the context of biomolecular systems including compounds of medicinal interest. © 2012 Wiley Periodicals, Inc.     

Conformational study of a guaiacyl beta-O-4 lignin model compound by NMR. Examination of intramolecular hydrogen bonding interactions and conformational flexibility in solution

Intramolecular H-bonding interactions were investigated in solution for the threo and erythro diastereomeric forms of a guaiacyl beta-O-4 lignin model compound by using the NMR data obtained from hydroxyl protons. Temperature coefficients of the chemical shifts (ddelta/dT) and coupling constants (3J(HCOH)) were measured in aprotic and protic solutions: DMSO-d6, acetone-d6 and acetone-d6-water. The NMR parameters do not support the existence of strong and persistent intramolecular H-bonds that could participate in the stabilization of the guaiacyl beta-O-4 structure in solution, but instead indicate that intermolecular H-bonds to solvent predominate. 1D NOE experiments nevertheless revealed the presence of a direct chemical exchange between the hydroxyl protons, suggesting the possible existence of weak and transient intramolecular H-bonding interactions. The conformational flexibility of the threo structure was also investigated in acetone solution from the measurement of long-range 1H, 1H and 1H, 13C coupling constants and from NOESY experiments. The NMR data are not consistent with any single conformation, indicating that different conformers co-exist in solution. The experimental results support the conformational flexibility predicted by molecular dynamics simulations performed in a previous study. Finally, both experimental and theoretical approaches indicate that weak intramolecular H-bonds can exist transiently in solution, breaking and reforming as the beta-O-4 molecule undergoes conformational interconversion, but cannot be invoked as possible means of conferring rigidity to the beta-O-4 structure.     

Amino acid‐based bioanalogous polymers. Synthesis,and study of regular poly(ester amide)s based on bis(α‐amino acid) α,ω‐alkylene diesters,and aliphatic dicarboxylic acids

The purpose of this research was to synthesize new regular poly(ester amide)s (PEAs) consisting of nontoxic building blocks like hydrophobic α‐amino acids, α,ω‐diols, and aliphatic dicarboxylic acids, and to examine the effects of the structure of these building block components on some physico‐chemical and biochemical properties of the polymers. PEAs were prepared by solution polycondensation of di‐p‐toluenesulfonic acid salts of bis‐(α‐amino acid) α,ω‐alkylene diesters and di‐p‐nitrophenyl esters of diacids. Optimal conditions of this reaction have been studied. High molecular weight PEAs (M_w = 24,000–167,000) with narrow polydispersity (M_w/M_n = 1.20–1.81) were prepared under the optimal reaction conditions and exhibited excellent film‐forming properties. PEAs obtained are mostly amorphous materials with T_g from 11 to 59°C. α‐Chymotrypsin catalyzed in vitro hydrolysis of these new PEA substrates was studied to assess the effect of the building blocks of these new polymers on their biodegradation properties. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 391–407, 1999     

Blends of isotactic polypropylene and natural terpene resins. I. Phase structure,thermal, and dynamic‐mechanical properties

This article discusses the influence of two natural terpene resins (NTR), poly(α‐pinene) (PαP A115) and poly(d‐limonene) (PL C115), on morphology, miscibility, thermal, and dynamic‐mechanical properties of their blends with isotactic polypropylene (iPP). The NTR have interesting physical and chemical properties, and they are approved for food contact application. From the results of differential scanning calorimetry and dynamic‐mechanical thermal analysis it was deduced that both the resins were completely miscible with the amorphous iPP up to the composition investigated here (70/30 wt %). Scanning electron microscopy (SEM) analysis instead showed that the 70/30 iPP/PαP A115 blend and 80/20 and 70/30 iPP/PL C115 blends contained very small domains homogeneously distributed into the matrix. It is hypothesized that the domains are likely formed by the terpene‐rich phase, and the matrix by the iPP‐rich phase (besides the crystallized iPP phase). The iPP‐rich phase and the NTR‐rich phase would have the glass transition temperatures so close that they cannot be resolved by DSC and DMTA. Finally, for the iPP/PαP A115 system an upper critical solution temperature (UCST) is proposed. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 867–878, 1999     

NH2SO3H–SiO2 as a new water‐compatible,recyclable heterogeneous catalyst for the synthesis of novel (α,β‐unsaturated) β‐amino ketones via aza‐Michael reaction

NH₂SO₃H–SiO₂/water as a novel catalytic system was used for the synthesis of (α,β‐unsaturated) β‐amino ketones via aza‐Michael reaction at reflux conditions. The methodology was of general applicability and the catalyst exhibited activity up to five cycles. The catalyst was characterized for the first time using FT‐IR, X‐ray diffraction and scanning electron microscopic–energy dispersion analytical X‐ray. The stability of the catalyst was evaluated by differential scanning calorimetry and TGA/differential thermal analysis. High efficiency of the catalyst along with its recycling ability and the rather low loading demonstrated in reactions are the merits of the presented protocol. Copyright © 2013 John Wiley & Sons, Ltd.     

Aryl Phosphine Nickel(II) and Palladium(II) Complexes with N,O‐Amino‐carboxylate Chelate Ligands [(Aryl)(R3P)M(N,O‐α‐aminocarboxylate)](M = Ni,Pd). Catalysts for the Polymerization of Olefins

The title complexes [(Aryl)(R₃P)M(N,O‐α‐aminocarboxylate)] (M = Ni, Pd) were synthesized by reaction of [(o‐tolyl)(Ph₃P)₂NiBr] or of [(p‐Me₃CC₆H₄)(o‐tolyl₃P)Pd(μ‐Br)]₂ with the anions of α‐amino acids. The spectroscopic data indicate that the nickel complexes are formed as mixtures of isomers, whereas for the palladium complexes only one isomer is observed. The complex [(o‐tolyl)(Ph₃P)Ni(glycinate)] is – in the presence of AlEt₃ – a highly active catalyst for the polymerization of ethylene [up to 1800 kg PE / (mol Ni·h)] and gives polymers with remarkably high molecular weights (up to 900.000 g/mol) and with few branchings.     

Lanthanide‐induced shifts in the structural elucidation of β‐hydroxydecalones

The use of Eu(fod)₃ in the analysis of the ¹H and ¹³C NMR spectra of cis and trans‐fused β‐hydroxydecalones is described. The relative configuration of the substituents is discussed using the PMLIS algorithm to determine the lanthanide (Eu) ion position in the complex in an effective axially symmetric model. The conformations of two cis‐decalones are also discussed. Copyright © 2002 John Wiley & Sons, Ltd.