Vibrational spectroscopy of lapachol, α- and β-lapachone: Theoretical and experimental elucidation of the Raman and infrared spectra

Raman and infrared spectroscopy were applied for the vibrational characterization of lapachol and its pyran derivatives, α-lapachone and β-lapachone. Experimental spectra of solid state samples were acquired between 4000 and 100 cm⁻¹ in Raman experiments, and between 4000 and 600 cm⁻¹ (mid-infrared) and 600–100 cm⁻¹ (far-infrared) with FTIR spectroscopy, respectively. Full structure optimization and theoretical vibrational wavenumbers were calculated at the B3LYP/6-31 + + G(d,p) level. Detailed assignments of vibrational modes in an experimental and theoretical spectra were based on potential energy distribution analyses, using Veda 4.1 software. Clear differentiation between the three compounds was verified in the region between 1725 and 1525 cm⁻¹, in which the ν(CO) and ν(CC) modes of the quinone moiety were assigned.     

Stereoselective reduction,methylation, and phenylation of the 13-carbonyl group in chlorophyll derivatives

Regioselective reduction of the 13-carbonyl group on the five-membered exo-ring of methyl pyropheophorbide-a, one of the chlorophyll-a derivatives, with sodium borohydride gave an epimeric mixture of (13¹R/S)-hydroxy-chlorins. The stereoselectivity was controlled by the steric effect of the (17S)-methoxycarbonylethyl group to afford the (13¹S)-rich secondary alcohol (25% de). The use of sterically large lithium tri(sec-butyl)borohydride as the reductant enhanced the stereoselectivity to 55% de. The regio- and stereoselective methylation and phenylation of the 13-CO of pyropheophorbide-a were observed using methyl and phenyl lithium, respectively. The major diastereomer of the tertiary alcohols obtained had the same configuration at the 13¹-stereogenic center as in the reduced product. All of the anion species (H^?, CH₃^?, and C₆H₅^?) favorably attacked the 13¹-carbon atom from the reverse side of the 17-propionate residue, that is, the less sterically crowded face of the 13-CO plane.     

Stereoselective reduction,methylation, and phenylation of the 13-carbonyl group in chlorophyll derivatives

Regioselective reduction of the 13-carbonyl group on the five-membered exo-ring of methyl pyropheophorbide-a, one of the chlorophyll-a derivatives, with sodium borohydride gave an epimeric mixture of (13¹R/S)-hydroxy-chlorins. The stereoselectivity was controlled by the steric effect of the (17S)-methoxycarbonylethyl group to afford the (13¹S)-rich secondary alcohol (25% de). The use of sterically large lithium tri(sec-butyl)borohydride as the reductant enhanced the stereoselectivity to 55% de. The regio- and stereoselective methylation and phenylation of the 13-CO of pyropheophorbide-a were observed using methyl and phenyl lithium, respectively. The major diastereomer of the tertiary alcohols obtained had the same configuration at the 13¹-stereogenic center as in the reduced product. All of the anion species (H^?, CH₃^?, and C₆H₅^?) favorably attacked the 13¹-carbon atom from the reverse side of the 17-propionate residue, that is, the less sterically crowded face of the 13-CO plane.     

Structural studies of methyl brevifolincarboxylate in solid state by means of NMR spectroscopy and DFT calculations

Methyl brevifolincarboxylate isolated from the herb of Potentilla argentea L. (Rosaceae) is a representative of the naturally occurring polyphenols. The compound is of pharmaceutical interest mainly because of its antiviral and antioxidant properties. ¹³C NMR spectra were recorded for solution and solid phase. ¹³C CPMAS spectra were assigned by comparison with solution data, dipolar dephasing and short contact time experiments. The correctness of assignments was verified by GIAO DFT calculations of shielding constants. The differences between the solution and solid state chemical shift values were explained in terms of orientation of OH groups and intramolecular hydrogen bonds. The splitting of the C1O resonance shows that there exists a polymorphism in the solid phase, which might be due to the formation of intramolecular hydrogen bond involving carbonyl or methoxy oxygen (i.e. C10OH⋯OC or C10OH⋯OCH₃).     

QM/MM dynamics of a Peridinin model in triplet state in three prototypical solvents

Peridinin (Per) is a carbonyl-containing carotenoid playing a key role in light harvesting and photoprotection in dinoflagellates. This carotenoid plays its photoprotective role by quenching the potentially dangerous ³Chl-a triplet state through the formation of the non-reactive ³Per triplet state through Dexter energy transfer mechanism. We have investigated by means of Quantum Mechanics/Molecular Mechanics dynamics simulations at room temperature the structural and dynamical properties of a Peridinin model system (PMS) in triplet state in three different solvents: cyclohexane, apolar/aprotic; acetonitrile, polar/aprotic; and methanol (MeOH), polar/protic. Our results of ³PMS in MeOH show that the lactonic carbonyl has a stronger tendency to accept hydrogen bonds compared to the corresponding singlet ground state (¹PMS). This effect may play some so far overlooked role in Per-containing proteins (notably the water soluble Peridinin-Chlorophyll-Proteins – PCPs).The vibrational properties of the ³PMS dynamics in the three solvents have been analyzed by means of decomposition of the vibrational density of states in effective normal modes. The results show that the solute-solvent interactions can influence some vibrational bands of ³PMS; in particular, they are able to modulate the position of the lactonic CO stretching band. The situation is particularly evident in the case of MeOH, where the dynamics of the MeOH⋯OC hydrogen bond interactions can strongly influence the band position and shape. As vibrational spectroscopy (notably step-scan FTIR difference spectroscopy) has been largely used to investigate ³Per in PCPs, especially using the lactonic carbonyl stretching as a marker band to investigate the different photophysical role of each Per in the protein complex, this study represents an important step to understand the experimental spectra and to identify the Per(s) molecule(s) bearing the triplet in PCPs.     

Fourier transformed infrared spectral investigations of molecular interactions in propionic acid–2-propanol binary system

FTIR spectra of propionic acid (PA), 2-propanol (PROH) and its binary mixtures with varying molefraction of the PA were recorded in the region 500–3500 cm^?1, to investigate the formation of hydrogen bonded complexes in a mixed system. The observed features in ν(CO), ν(CO) and δ(COH) of PA, ν(CO) of PROH and δ(COH) of PA + PROH have been explained in terms of the hydrogen bonding interactions between PROH and PA and dipole–dipole interaction. The dipole moment derivative for the above mentioned vibrational modes have also been predicted from the integrated absorbance. The intrinsic linewidth for the vibrational modes ν(CO) and δ(COH) of PA has been elucidated using Bondarev and Mardaeva model.     

Reaction of the RuTp(PR3)Cl fragment with alkynols: Formation of carbene,vinylidene, allenylidene,and carbyne complexes

The reaction of RuTp(COD)Cl (1) with PR₃ (PR₃ = PPh₂ⁱPr, PⁱPr₃, PPh₃) and propargylic alcohols HCCCPh₂OH, HCCCFc₂OH (Fc = ferrocenyl), and HCCC(Ph)MeOH has been studied.In the case of PR₃ = PPh₂ⁱPr, PⁱPr₃ and HCCCPh₂OH, the 3-hydroxyvinylidene complexes RuTp(PPh₂ⁱPr)(CCHC(Ph)₂OH)Cl (2a) and RuTp(PⁱPr₃)(CCHC(Ph₂)OH)Cl (2b) were isolated.With PR₃ = PPh₂ⁱPr and HCCCFc₂OH as well as with PR₃ = PPh₃ and HCCCPh₂OH dehydration takes place affording the allenylidene complexes RuTp(PPh₂ⁱPr)(CCCFc₂)Cl (3b) and RuTp(PPh₃)(CCCPh₂)Cl (3c).Similarly, with PPh₂ⁱPr and HCCC(Ph)MeOH rapid elimination of water results in the formation of the vinylvinylidene complex RuTp(PPh₂ⁱPr)(CCHC(Ph)CH₂)Cl (4).In contrast to the reactions of the RuTp(PR₃)Cl fragment with propargylic alcohols, with HCC(CH₂)_nOH (n = 2, 3, 4, 5) six-, and seven-membered cyclic oxycarbene complexes RuTp(PR₃)(C₄H₆O)Cl (5), RuTp(PR₃)(C₅H₈O)Cl (6), and RuTp(PR₃)(C₆H₁₀O)Cl (7) are obtained. On the other hand, with 1-ethynylcyclohexanol the vinylvinylidene complex RuTp(PPh₂ⁱPr)(CCHC₆H₉)Cl (8) is formed. The reaction of the allenylidene complexes 3a–c with acid has been investigated. Addition of CF₃COOH to a solution of 3a–c resulted in the reversible formation of the novel RuTp vinylcarbyne complexes [RuTp(PPh₂ⁱPr)(C–CHCPh₂)Cl]⁺ (9a), [RuTp(PPh₂ⁱPr)(C–CHCFc₂)Cl]⁺ (9b), and [RuTp(PPh₃)(C–CHCPh₂)Cl]⁺ (9c). The structures of 3a, 3b, and 5b have been determined by X-ray crystallography.     

1,3-Dipolar cycloaddition of diaryldiazomethanes across N-ethoxy-carbonyl-N-(2,2,2-trichloroethylidene)amine and reactivity of the resulting 2-azabutadienes towards thiolates and cyclic amides

1,3-dipolar cycloaddition of diaryldiazomethanes Ar₂CN₂ across Cl₃C–CHN–CO₂Et 1 yields Δ³-1,2,4-triazolines 2. Thermolysis of 2 leads, via transient azomethine ylides 3, to diaryldichloroazabutadienes [Ar(Ar')CN–CHCCl₂] 4. Treatment of 4a (Ar = Ar' = C₆H₅) and 4c (Ar = Ar' = p-ClC₆H₄) with NaSR in DMF yields 2-azabutadienes [Ar₂CN–C(H)C(SR)₂] 5. In contrast, nucleophilic attack of NaStBu on 4 affords azadienic dithioethers [Ar₂CN–C(S^tBu)C(H)(S^tBu)] (7a Ar = C₆H₅; 7b Ar' = p-ClC₆H₄). The reaction of 4a with NaSEt conducted in neat EtSH produces [Ph₂CN–C(H)(SEt)–CCl₂H] 8, which after dehydrochloration by NaOMe and subsequent addition of NaSEt is converted to [Ph₂CN–C(SEt)C(H)(SEt)] 7c. Upon the reaction of 4c with NaSⁱPr, the intermediate dithioether [(p-ClC₆H₄)₂CN–CHC(SⁱPr)₂] 5k is converted to tetrakisthioether [(p-ⁱPrSC₆H₄)₂CN–CHC(SⁱPr)₂] 6. Treatment of 4a with the sodium salt of piperidine leads to [Ph₂CN–CHC(NC₅H₁₀)₂] 10. The coordination of 6 on CuBr affords the macrocyclic dinuclear Cu(I) complex 11. The crystal structures of 5i, 7a,b, 10 and 11 have been determined by X-ray diffraction.     

A convenient route to six-membered heterocyclic carbene complexes: Reactions of aminoallenylidene complexes with 1,3-bidentate nucleophiles

Pentacarbonyl dimethylamino(methoxy)allenylidene complexes of chromium and tungsten, [(CO)₅MCCC(NMe₂)OMe] (M = Cr (1a), W (1b)), react with 1,3-bidentate nucleophiles such as amidines and guanidine, H₂N–C(NH)R (R = Ph, C₆H₄NH₂-4, C₆H₄NO₂-3, NH₂), by displacing the methoxy substituent to give exclusively dimethylamino(imino)-allenylidene complexes, [(CO)₅MCCC{NC(NH₂)R}NMe₂] (2a–5a, 2b). Treatment of the chromium complexes 2a–5a with catalytic amounts of hydrochloric acid or HBF₄ gives rise to an intramolecular cyclization. Addition of the terminal NH₂ substituent to the C_α–C_β bond of the allenylidene chain affords pyrimidinylidene complexes 6–9 in high yield. In contrast to the chromium complexes 2a–5a, the corresponding tungsten complex 2b could not be induced to cyclize due to the lower electrophilicity of the α-carbon atom in 2b. The dimethylamino(phenyl)allenylidene complex [(CO)₅CrCCC(NMe₂)Ph] (10) reacts with benzamidine or guanidine similarly to 1a. However, the second reaction step – cyclization to give pyrimidinylidene complexes – proceeds much faster. Therefore, the formation of an imino(phenyl)allenylidene complex as an intermediate is established only by IR spectroscopy. The analogous reaction of 10 with 3-amino-5-methylpyrazole affords, via a formal [3+3]-cycloaddition, a pyrazolo[1,5a]pyrimidinylidene complex 13. Compound 13 is obtained as two isomers differing in the relative position of the N-bound proton (1H or 4H). The related reaction of 10 with thioacetamide yields a thiazinylidene complex and additionally an alkenyl(amino)carbene complex.     

DFT study of Raman spectra of phosphorus-containing dendrimers built from thiophosphoryl core

The FT-Raman spectra of the first and second generations of phosphorus-containing dendrimers with terminal benzaldehyde and P–Cl groups have been recorded and analyzed. The structural optimization and normal mode analysis were performed for dendrimers on the basis of the density functional theory (DFT). The calculated geometrical parameters, harmonic vibrational frequencies and Raman scattering activities are predicted in a good agreement with the experimental data. The experimental Raman spectra of dendrimers were interpreted by means of potential energy distribution. Relying on DFT calculations the lines of the core, repeating units and terminal groups of dendrimers were assigned.The influence of the encirclement on the line frequencies and intensities was studied and due to the predictable, controlled and reproducible structure of dendrimers the information, usually inaccessible is obtained. The strong line at 1600 cm⁻¹ show marked changes of intensity in dependence of aldehyde (CHO) or azomethyne (CHN) substituents in the aromatic ring. The polarizabilities and lipophilicity of the eleven generations of dendrimers were estimated based on the calculated values of the first generations.     

Reaction of isocyanides with iminophosphorane-based carbene ligands: Synthesis of unprecedented ketenimine–ruthenium complexes

The RuC bond of the bis(iminophosphorano)methandiide-based ruthenium(II) carbene complexes [Ru(η⁶-p-cymene)(κ²-C,N-C[P{NP(O)(OR)₂}Ph₂]₂)] (R = Et (1), Ph (2)) undergoes a C–C coupling process with isocyanides to afford ketenimine derivatives [Ru(η⁶-p-cymene)(κ³-C,C,N-C(CNR′)[P{NP(O)(OR)₂}Ph₂]₂)] (R = Et, R′ = Bz (3a), 2,6-C₆H₃Me₂ (3b), Cy (3c); R = Ph, R′ = Bz (4a), 2,6-C₆H₃Me₂ (4b), Cy (4c)). Compounds 3–4a–c represent the first examples of ketenimine–ruthenium complexes reported to date. Protonation of 3–4a with HBF₄ · Et₂O takes place selectively at the ketenimine nitrogen atom yielding the cationic derivatives [Ru(η⁶-p-cymene)(κ³-C,C,N-C(CNHBz)[P{NP(O)(OR)₂}Ph₂]₂)][BF₄] (R = Et (5a), Ph (6a)).     

Theoretical study on the potential energy surface of SiC2O

The DFT/B3LYP/6-311G(d) and CCSD(T)/6-311G(2df) (single-point) methods have been used to investigate the potential energy surface of SiC₂O. A total of 11 isomers are located, which are connected by 13 interconversion transition states. The global minimum is the linear SiCCO with ¹Σ⁺ electronic state whose structure can be described as cumulenic double bonding form :SiCCÖ:. The isomer O-cSiCC possessing SiCC three-membered ring with an exocyclic OSi bond also shows considerable stability. Both SiCCO and O-cSiCC are kinetically stable towards isomerization and dissociation. Further calculations are performed at the CCSD(T)/6-311G(2df)//QCISD/6-311G(2d) level to obtain more reliable energies, geometrical parameters, harmonic vibrational frequencies and infrared intensities of the isomers. The energies and geometrical parameters are also calculated with the CASPT2//CASSCF methods.     

Study of the hydrogen bonding of 1,4-bis[(3,4,5-trihexyloxyphenyl)hydrazide]phenylene in crystalline and liquid crystalline phases using infrared,Raman, and two-dimensional correlation spectroscopy

The vibrational bands of a dihydrazide derivative, 1,4-bis[(3,4,5-trihexyloxyphenyl)hydrazide]phenylene (TC6), observed in the Raman and infrared spectra were assigned. The intermolecular hydrogen bonding vibrational bands due to CO and NH groups in the low-frequency Raman spectra were observed at 111 and 94 cm⁻¹ in the crystalline and liquid crystalline (LC) phases, respectively. The sequential order of changes in the hydrogen bonding and alkyl chains was opposite in the crystalline and LC phases. The modifications in the hydrogen bonding occurred prior to conformational changes in the hydrocarbon chains in the crystalline phase; however, a reverse trend was observed in the LC phase. Simultaneously, the two-dimensional (2D) IR and Raman correlation spectroscopic analysis showed that the amide I band of TC6 in the LC phase comprised at least five distinct bands. In addition, the hetero 2D correlation between the NH and CO groups confirmed that no free NH and CO groups existed in the LC phase.     

Comparative DFT study of Raman spectra of phosphorus-containing dendrimers built from thiophosphoryl,cyclotriphosphazene and phthalocyanine cores

The FT Raman spectra of the zero and first generations of phosphorus-containing dendrimers built from thiophosphoryl, cyclotriphosphazene and phthalocyanine core with terminal oxybenzaldehyde groups have been recorded and analyzed. The structural optimization and normal mode analysis were performed for dendrimers on the basis of the density functional theory (DFT). The calculated geometrical parameters, harmonic vibrational frequencies and Raman scattering activities are predicted in a good agreement with the experimental data. The experimental Raman spectra of dendrimers were interpreted by means of potential energy distribution. Relying on DFT calculations the lines of the cores, repeating units and terminal groups of dendrimers were assigned.The influence of the encirclement on the line frequencies and intensities was studied and due to the predictable, controlled and reproducible structure of dendrimers the information, usually inaccessible is obtained. The strong line at 1600 cm⁻¹ show marked changes of intensity in dependence of aldehyde (CHO) or azomethyne (CHN) substituents in the aromatic ring. The polarizabilities and lipophilicity of dendrimers were estimated.     

Synthesis,spectral studies,antimicrobial and insect antifeedant activities of some substituted styryl 4′-fluorophenyl ketones

Good yield of some substituted styryl 4′-fluorophenyl ketones were synthesized by solvent free fly-ash:water catalyzed eco-friendly environmentally benign Aldol reaction. These chalcones were characterized by physical constants, micro analysis and spectral data. Antimicrobial and insect antifeedant activities were measured in all chalcones. The group frequencies of all chalcones like carbonyl stretches νCO, C–F and the deformation modes of vinyl part of CH– out of plane, in-plane, CHCH out of plane and >CC< out of plane (cm⁻¹), the vinyl hydrogen and carbons δ(ppm) of H_α, H_β, C_α, C_β and CO were assigned and these frequencies were correlated with various kinds of substituent constants. From the results of statistical analysis the influence of electronic effects of substituents on the spectral data of carbonyl group, vinyl proton and carbons of the ketones have been explained.     

Infrared spectra of monomeric thioformaldehyde in Ar,N2 and Xe matrices

Pyrolysis products of 1,3-dithietane were trapped in low-temperature matrices and their infrared spectra were recorded. The vibrational bands of monomeric H₂CS, which was not perturbed by other decomposition products, were identified in Ar, N₂ and Xe matrices. These results will be useful to evaluate the frequency shifts of H₂CS induced by the interaction with other molecules.     

Synthesis of macrocyclic polyethers via Ru complex-catalyzed metathesis cyclization and their use as the ring component of rotaxanes

Ring closing metathesis of the vinyl group-terminated oligoethers catalyzed by RuCl₂(CHPh)(PCy₃)₂ yielded macrocyclic polyethers containing vinylene group. The ¹H and ¹³C NMR spectra indicated the presence of CC double bond (trans/cis = ca. 80:20). The obtained 23-membered cyclic ether reacted with benzyl(anthrylmethl)ammonium hexafluorophosphate to produce the pseudo-rotaxane as colorless crystals. X-ray crystallography revealed N–H⋯O hydrogen bonds and stacking of the aromatic planes between the host and guest molecules, which stabilized the rotaxane structure in the solid state.     

Vibrational relaxation study of CO stretching mode of liquid N,N-dimethylformamide: Comparative study with theoretical calculation

The study reports to the bandshape analysis of CO stretching band of liquid N,N-dimethylformamide using various polar and non-polar solvents. The changes in bandwidths and anisotropy shift have been explained for neat liquid as well as binary mixtures using different solvents. The vibrational relaxation rates were correlated with different solvent concentrations to understand interacting nature of molecules. Ab initio calculation is carried out to give a complete picture of the molecule and vibrational spectra. The calculated characteristics of DMF are in good agreement with experimental values, allowing them to be used in spectral and structural analysis.     

Chromium tricarbonyl complex of phosphaalkene: Crystal structure and electrochemistry of the Cr(CO)3 complex of PhC(H)PMes*, EPR and DFT studies of its radical anion

We report the synthesis, crystal structure and electrochemical behaviour of a complex in which the Ph group of the phosphaalkene PhC(H)PMes* (Mes*: 2,4,6-tri-tert-butylphenyl) is coordinated to a chromium tricarbonyl group. The EPR spectra resulting from electrochemical and chemical reductions are described and the experimental g and hyperfine tensors (³¹P)T, as determined from the EPR data, are compared with those predicted by DFT calculations for the radical anion (Cr(CO)₃, PhC(H)PMes)⁻. The structural changes caused by the addition of an electron to the neutral complex are described, together with an estimation of the contribution of Cr(CO)₃ to the stabilization of the radical anion.     

Nitrogen- and oxygen-bridged bidentate phosphaalkene ligands

An overview is given on synthesis and structures of new bidentate phosphaalkene ligands [(RMe₂Si)₂CP]₂E (E = O, NR, N^?) and (RMe₂Si)₂CPN(R′)PR′′₂. Exceptional properties of these ligands, extending beyond predictable properties of phosphaalkenes are: (i) the NSi bond cleavage of [(iPrMe₂Si)₂CP]₂NSiMe₃ with Au^I and Rh^I chloro complexes under mild conditions leading to binuclear complexes of the 6π-delocalised imidobisphosphaalkene anion [(iPrMe₂Si)₂CP]₂N^?, and (ii) the chlorotropic formation of molecular 1:2 Pd^II and Pt^II metallochloroylid complexes with novel ylid-type ligands [(RMe₂Si)₂CP(Cl)N(R)PR₂]^?, and the transformation of a P-platina-P-chloroylid complex into a C-platina phosphaalkene by intramolecular chlorosilane elimination. Properties of the heavier congeners [(RMe₂Si)₂CP]₂E (E = S, Se, Te, PR, P^?, As^?) and (RMe₂Si)₂CPEPR′′₂ (E = S, Se, Te) are also described.