甲醛与甲酰胺相互作用的从头算研究

The optimizations geometries and vibrational frequencies of H2CO,HCONH2 and acquired 3 complexes between H2CO?HCONH2 have been calculated by using the ab initio method at the MP2/6-31G（ d）and MP2 （FC）/6-311++G（d,p）level. The non-minimum structures with negative vibrational frequencies are excluded. The lowest energy conformer of these complexes is a cyclic structure with N - H?O and C - H?O hydrogen bonds in a common plane. No significant changes are observed in the geometries of the monomers in their complexed state. The most characteristic geometrical properties of the complex are the lengthening of the contacting N-H bonds by 0.4-1.1 pm,and the general shortening of the contacting C-H bonds by 0.3-0.4 pm with respect to the monomers. The interaction energies of complexes have been corrected by the basis set superposition error （BSSE）using the full Boys-Bernardi counterpoise correction scheme. The corrected complex interaction energies of 3 structures at MP2/6-311++G（2df,3p）/ / MP2（FC）/6-311++G（d,p）level are -29.94, -16.10 and -18.45 kJ/mol,respectively. The interaction energies indicate that C - H?O is a weak hydrogen bond. The results of natural bond orbital population analysis reveals that there is only a small charge-transfer in the process of forming the complexes. The results of natural bond orbital analysis and atom in the molecule scheme appear quite significant in view of their importance for understanding the mechanisms of intermolecular interaction leading to hydrogen bonding. The results of molecular interaction energy decomposition analysis show that the electrostatic interaction plays an essential role in stabilizing the H2CO?HCONH2 complexes.     

锂离子与芳香体系相互作用的量子化学研究

运用微扰MP2和密度泛函B3LYP方法在不同的基组水平上对锂离子与一系列以杂环为主的芳香化合物所形成复合物的可能构型进行了优化,获得了复合物的几何构型、电荷转移量、结合能等重要信息,对阳离子-π作用与阳离子-杂原子作用的竞争情况进行了讨论.特别是,我们发现此体系阳离子-π复合物的结合能和芳环单体中心上方一个点的静电势成很好的线性相关.揭示了锂离子与芳香杂环形成阳离子-π复合物的形成过程中静电势起着非常重要的作用;同时表明,可用芳环表面静电势来定量预测较复杂体系阳离子-π作用结合能的大小.     

甲醛与甲酸相互作用的从头算研究

在MP2／6—31G(d)和MP2(FC)／6—311 G(d，p)水平上，对H2CO和HCOOH以及设计的4种构型H2CO…HCOOH复合物等进行几何全优化计算，经振动频率分析，确认它们为势能面上的稳定驻点．然后在MP2／6—311 G(2df，2p)水平上进行单点能计算和基组重叠误差(BSSE)校正以获得相互作用能，并利用自然键轨道理论探讨H2CO和H(X)OH相互作用的本质。     

甲醛与乙醛,甲醚,硝基甲烷相互作用的从头算研究

用6-31G、全构型优化,研究了甲醛与乙醛、甲醚、硝基甲烷的相互作用。结果表明所有超分子稳定构型都包含2个C—H—O氢键的平面环状结构。H—O距离为0.228～0.264 nm,作用能为—19～—24 kJ/mol,与二聚水的作用能接近。稳定性主要取决于甲基上取代基Y吸电子能力以及环状结构中氢键张力。STO-3G不很适用于研究这类分子的相互作用。     

CHF_2CF_2CH_2OCHF_2与OH自由基反应机理的理论研究

采用从头算和密度泛函方法研究了多通道反应CHF2CF2CH2OCHF2+OH→产物的反应机理.首先在BMK/6-311+G(d,p)水平下优化了稳定点的几何构型并计算了振动频率;然后在BMC-CCSD水平下,对势能面进行高水平能量校正.结果表明,此反应存在提氢和取代两类反应通道,但是无论从动力学还是从热力学分析,提氢反应通道才是主要的反应通道,且从-CH2-基团上提取氢原子的提氢通道是主要的反应通道.     

磷酸二甲酯阴离子(DMP~-)与一价、二价金属离子 相互作用的理论研究

在B3LYP、HF和MP2水平上运用全电子从头算(AE)和相对论有效实势(RECP)及6-311+G**和LanL2DZ基组计算Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与磷酸二甲酯阴离子(DMP-)的相互作用。 RECP用于除Li+、Be2+外所有的金属离子。 对Na+、K+、Cu+、Mg2+、Ca2+、Zn2+用AE和RECP 2种方法处理。 结果表明:RECP能可靠地用于重金属离子络合物; 二价金属离子络合物(DMP-—M2+)比一价金属离子络合物 (DMP-—M+)稳定;二价金属离子(M2+)可能比一价金属离子(M+)更易使多核苷酸折叠。     

价键理论中的组态相互作用

近 2 0年来 ,从头计算水平的价键 (VB)方法得到了人们的重视 ,并广泛应用于化学反应等问题的研究[1～ 5] ,然而目前价键理论的计算方法仍然很不完善 .用 VBSCF方法进行计算虽然比较简单 ,能正确地描述化学反应的形成机理 ,但数值结果不理想 ;而用 BOVB方法[4 ] 进行计算虽然可以得到较好的计算结果 ,但存在收敛困难等问题 .分子轨道理论中的组态相互作用是一种简单直接的电子相关能计算方法 ,显然这一方法可以应用于价键方法中 .然而与分子轨道理论方法不同 ,在价键方法中 ,无法直接得到空轨道 ,此外如何选取激发价键函数使得计算结果…     

CIO自由基与CN自由基反应的密度泛函理论研究

应用量子化学从头算和密度泛函理论（DFT）对CIO与CN的双自由基反应进行了研究．结果表明,CIO自由基的O原子进攻CN自由基的C原子是主要的进攻方式,并形成了中间体1 CIOCN．随后,中间体1发生异构化和分解反应得到热力学上可行的3种产物P4（CINCO）,P1（CO＋CIN）和P3（NO＋CCl）．其中P4是主要产物,P1和P3是次要产物．与单态势能面上相比,三态势能面对整个反应的贡献可以忽略．     

氧原子和甲基自由基反应机理的理论研究

用分子轨道从头算和密度泛函理论（DFT）中的B3LYP方法以及适中基组6-311+G(2df,2p)对氧原子与甲基CH3反应进行了系统的研究。计算给出了反应通道上各驻点物种的构型参数、振动频率和能量。结果表明： CH2OH比CH3O稳定,能量约低26.63 kJ/mol,且生成氢和甲醛为其最主要反应通道。     

肾上腺素与胞嘧啶相互作用的密度泛函理论研究

采用密度泛函理论（DFT）B3LYP方法和6-311＋G（d,p）基组对肾上腺素-胞嘧啶复合物进行结构优化和频率计算,得到15种稳定的复合物.研究发现,所有的复合物进行基组重叠误差（BSSE）校正后的相互作用能为-11.43^-48.96kJ/mol,符合氢键能量范围,相互作用能主要由氢键所贡献.结构和振动频率分析显示,氢键的形成使相应O（N）—H键的键长变长,对称伸缩振动频率减小,说明复合物中形成的氢键都是正常的红移型氢键.应用自然键轨道（NBO）理论和分子中的原子（AIM）理论对15种复合物的氢键性质和特征进行分析,发现氢键对于复合物的稳定性起着重要作用,当复合物形成2个或更多的氢键时,氢键的数目、类型及强度共同决定着复合物的稳定性,复合物基本符合三氢键〉二氢键〉单氢键的稳定顺序,三氢键复合物4是最稳定的,复合物3存在单氢键O—H…O,比部分二氢键复合物要稳定.     

A Theoretical Study on the Hydrogen—bonded Dimers of HNCO Molecules

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Theoretical studies on the conformations and properties of phenylazonaphthalenes

The conformations of phenylazo‐2‐naphthalene (I) and phenylazo‐1‐naphthalene (II) have been studied using ab initio methods and density functional theory. The rotational potential energy surfaces about the C N bonds were calculated for both the trans and the cis forms at the PM3 and HF/STO‐3G levels. The PM3 method was found to be incapable for locating the energy minima correctly. The geometries of rotamers obtained from the HF/STO‐3G surface were fully optimized at the HF/6‐31G* and B3LYP/6‐31G* levels. Single‐point MP2/6‐31G* calculations have also been carried out at the HF/6‐31G* geometries. The vibrational spectra, standard thermodynamic functions, heats of formation, and equilibrium molar fractions have been obtained. According to the calculated results, I is comparatively more stable than II. The trans forms have much lower energies than the cis forms, implying that I and II mainly exist in the trans planar forms. The energy gap (ΔE) between the frontier molecular orbitals (MOs) of the cis forms are about 0.7 eV higher than those of the trans ones, indicating that change in geometry from trans to cis form will cause a hypsochromic effect. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 79: 25–33, 2000     

甲醛在CeO2(111)表面吸附的密度泛函理论研究

采用基于第一性原理的密度泛函理论和周期平板模型, 研究了甲醛在以桥氧为端面的CeO2(111)稳定表面上的吸附行为. 通过对不同覆盖度, 不同吸附位的甲醛吸附构型、吸附能及电子态密度的分析发现, 甲醛在CeO2(111)表面存在化学吸附与物理吸附两种情况. 化学吸附结构中甲醛的碳、氧原子分别与表面的氧、铈原子发生相互作用, 形成CH2O2物种; 吸附能随着覆盖度的增加而减小. 与自由甲醛分子相比, 物理吸附的甲醛构型变化不大, 其吸附能较小. 利用CNEB(climbing nudged elastic band)方法计算了甲醛在CeO2(111)表面的初步解离反应活化能(约1.71 eV), 远高于甲醛脱附能垒, 这与甲醛在清洁CeO2(111)表面程序升温脱附实验中产物主要为甲醛的结果相一致.     

肾上腺素与二甲亚砜氢键作用的理论研究

The hydrogen bond is one of the most important intermolecular interactions playing an important role in intermolecular recognition processes essential to most biological systems. Adrenaline is an important catecholamine neurotransmitter in the mammalian central nervous system. Dimethyl sulphoxide can carry with it drugs across membranes. The geometries of adrenaline and six stable 1 : 1 complexes formed between adrenaline and dimethyl sulphoxide were optimized by Berny method at PM3 level and thus were optimized by density functional theory（B3LYP method）at the 6-31G,6-31G*,and 6-31+G* level respectively to obtain accurate structures. Single-point energies of all optimized molecular geometries were calculated to discuss the energies and structural parameters between reactants and products. All the binding energies have been corrected by the zero point vibrational energies（ZPVE）at varied basis set levels from 6-31G to 6-31 + G*. The results indicated that stronger hydrogen-bonded complexes were formed by molecular interaction between adrenaline and dimethyl sulphoxide. The calculation results can be better used to explain some experimental phenomena.     

吡咯与HCl和CHCl3分子间Cl(C)-H…π型氢键的理论研究

运用量子化学从头算(ab initio)方法,采用6-31G(d,p)基组对吡咯和HCl单体进行优化,结果表明MP2／6-31G(d,p)计算结果与实验结果较吻合．然后采用MP2／6-31G(d,p)方法对吡咯-HCl体系以及吡咯-CHCl3体系的分子间Cl(C)-H…π型氢键进行了理论研究,并在MP2／aug-cc-pVDZ水平计算了氢键作用能．研究表明,吡咯与HCl分子和CHCl3之间形成了Cl(C)-H…π型氢键,吡咯与HCl分子的氢键相互作用使HCl中H-Cl键长增加,振动频率减小了149cm^-1(红移);而吡咯与CHCl3之间的相互作用使CHCl3中的C-H键长减小,振动频率增加了33cm^-1(蓝移)．利用自然键轨道(NBO)分析表明电荷发生转移,吡咯-HCl体系中HCl得到0．0155e;吡咯-CHCl3体系中CHCl3得到0．0098e．     

醛基不饱和卡宾存在寿命的理论研究

采用量子化学中的的从头计算方法，在B3LYP/6-31G^**水平上研究了醛基不饱和卡宾HCO-CH=C：重排成醛基乙炔的反应机理。全优化得到了HCO-CH=C：的两种稳定构型以及对应的过渡态和产物的构型，并计算得到了各种构型的振动频率。在振动频率计算结果的基础上，采用过渡态理论计算了活化能最小的重排反应的的动力学性质，然后根据得到的反应速率常数，计算了不同温度下HCO-CH=C：的半衰期。结果表明，HCO-CH=C：的半衰期很短，室温下只有10^-13s左右。这对深入了解HCO-CH=C：的性质及其存在在寿命提供了有用的信息。     

硫代樟脑光化学反应的理论研究

运用量子化学方法优化了硫代樟脑的最低5个电子态(S₀, T₁, S₁, T₂和S₂)的结构, 并计算了它们的相对能量. 计算结果表明: S₁, T₁和T₂态的能量非常接近, 而S₂的能量远远高于T₂态, 这与之前对几种小的硫代羰基化合物的研究结论一致. 确定了硫代樟脑分子在T₁态发生β-插入反应和类Norrish II型反应的机理, 计算的势垒相对于S₀的振动零点分别为314.1和332.6 kJ/mol. 在400 nm波长的光的照射下, 分子被激发到S₁态, 此时分子没有足够的能量发生反应, 只能通过内转换回到基态. 当激发光波长在254 nm时, 硫代樟脑分子被激发到S₂态, 这时候体系有了足够的内部能量使反应发生. 实验上已经观察到此激发光波长下, 气态硫代樟脑可以发生β-插入反应和类Norrish II型反应.     

Theoretical Investigation on Interaction between Guanine and Luteolin

The interacting patterns of the luteolin and guanine have been investigated by using the density functional theory B3LYP method with 6-31＋G＊ basis set. Eighteen stable structures for the luteolin-guanine complexes have been found respectively. The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions. Meanwhile, both the number and strength of hydrogen bond play important roles in determining the stability of the complexes which can form two or more hydrogen bonds. Theories of atoms in molecules and natural bond orbital have also been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes which were corrected by basis set superposition error are 6.04-56.94 kJ/mol. The calculation results indicate that there are strong hydrogen bonding interactions in the luteolin-guanine complexes. We compared the interaction between luteolin and four bases of DNA, and found luteolin-thymine was the strongest and luteolin-adenine was the weakest. The interaction between luteolin and DNA bases are all stronger than luteolin-water.