1H and 13C NMR Spectroscopy of Stereoisomeric 2′-deoxy-C-Nucleosides

Eleven furanosyl 2′-deoxy-C-nucleosides with β-D-erythro, α-D-erythro and β-D-threo configurations have Been studied by IH and ¹³C NMR spectroscopy recorded in CDC1₃ and/or DMSO-d ₆. Results obtained indicate that each of the three stereoisomeric configurations studied are identifiable by ¹H and ¹³C NMR spectroscopy using a combination of coupling constant and chemical shift criteria.     

13C NMR Spectroscopy on the Complexation of α-Cyclodextrin with 1-Alkanols and 1-Alkanoate Ions

Binding constants for -cyclodextrin ( -CD) complexes with 1- alkanols and 1- alkanoate ions were determined by analyzing changes ( ) in chemical shifts of guest ¹³C NMR signals with -CD concentration. The guests gave well-separated ¹³C NMR signals. The curve-fitting analyses of for individual carbons upon assumption of a simple 1:1 complexation gave virtually the same binding constants (K₁) in the cases of guests with relatively short alkyl chains, such as 1-propanol, 1-butanol, 1- pentanol , 1- butanoate , 1- pentanoate , and 1-hexanoate. However, thus obtained individual K₁ values were significantly different from one another, when the guests had relatively long alkyl chains such as 1- hexanol , 1- heptanol , and 1-octanoate. In these guests, satisfactorily consistent K₁ values were obtained by the curve-fitting analyses of for individual carbons upon an assumption that not only 1:1 but also 2:1 (host:guest) complexation occurs.     

Conformational Study of 8—C—glucosyl—prunetin by Dynamic NMR Spectroscopy

By means of variable temperature NMR spectra,conformation of 8-C-glucosyl prunetin, isolated from the leaves of Dalbergia hainanensis (Leguminosae), was studied. The restricted rotation around the C(sp^3)-C(sp^2) bond in the C-glucosides isoflavonoid results in two main conformers (syn and anti). With the help of MM calculation, the preferred conformation A has H-1″ gauche to the 7-OCH3. The barrier to rotation was 18.1 kcal/mol. This result agrees with the calculated value 16.2 kcal/mol of free energy of activation for the interconversion between the conformers.     

Aromatic 19F–13C TROSY—[19F, 13C]-Pyrimidine Labeling for NMR Spectroscopy of RNA

We present the access to [5-¹⁹F, 5-¹³C]-uridine and -cytidine phosphoramidites for the production of site-specifically modified RNAs up to 65 nucleotides (nts). The amidites were used to introduce [5-¹⁹F, 5-¹³C]-pyrimidine labels into five RNAs—the 30 nt human immunodeficiency virus trans activation response (HIV TAR) 2 RNA, the 61 nt human hepatitis B virus ϵ (hHBV ϵ) RNA, the 49 nt SAM VI riboswitch aptamer domain from B. angulatum, the 29 nt apical stem loop of the pre-microRNA (miRNA) 21 and the 59 nt full length pre-miRNA 21. The main stimulus to introduce the aromatic ¹⁹F–¹³C-spin topology into RNA comes from a work of Boeszoermenyi et al., in which the dipole-dipole interaction and the chemical shift anisotropy relaxation mechanisms cancel each other leading to advantageous TROSY properties shown for aromatic protein sidechains. This aromatic ¹³C–¹⁹F labeling scheme is now transferred to RNA. We provide a protocol for the resonance assignment by solid phase synthesis based on diluted [5-¹⁹F, 5-¹³C]/[5-¹⁹F] pyrimidine labeling. For the 61 nt hHBV ϵ we find a beneficial ¹⁹F–¹³C TROSY enhancement, which should be even more pronounced in larger RNAs and will facilitate the NMR studies of larger RNAs. The [¹⁹F, ¹³C]-labeling of the SAM VI aptamer domain and the pre-miRNA 21 further opens the possibility to use the biorthogonal stable isotope reporter nuclei in in vivo NMR to observe ligand binding and microRNA processing in a biological relevant setting.     

Thermodynamic and 13C NMR Studies of the Inclusion Complexes of α- and β-Cyclodextrins with Cyano- and Nitrophenols in Aqueous Solution

Equilibrium constants for the formation of 1 : 1 inclusioncomplexes of -cyclodextrin (-CD) with neutral and anionic phenol derivatives (3- and 4-cyanophenols and 3- and 4-nitrophenols) have been evaluated at 5, 12, 25, and 35 °C by means of spectrophotometry. Similarly, the equilibrium constants have been determined for the inclusion complexes of-cyclodextrin (-CD) with the phenols. Enthalpy and entropy changes for the formationof the inclusion complexes have been estimated from the temperature dependences of theequilibrium constants. With -CD, the enthalpy andentropy changes for the anionic species have been found to be more negative than those for the neutral ones, except for 4-cyanophenol, suggesting that the inclusion complexes of the anionic species are more rigid than those of the neutral species. From analyses of chemical shift differences in ¹³C NMR spectra of 3- and 4-cyanophenolsand 3- and 4-nitrophenols in aqueous solutions with and without CDs, a nitro ora cyano group has been found to be first bound to the - and -CD cavities.     

13C NMR Spectroscopy of N-Heterocyclic Carbenes Can Selectively Probe σ Donation in Gold(I) Complexes

The Dewar–Chatt–Duncanson (DCD) model provides a successful theoretical framework to describe the nature of the chemical bond in transition-metal compounds and is especially useful in structural chemistry and catalysis. However, how to actually measure its constituents (substrate-to-metal donation and metal-to-substrate back-donation) is yet uncertain. Recently, we demonstrated that the DCD components can be neatly disentangled and the π back-donation component put in strict correlation with some experimental observables. In the present work we make a further crucial step forward, showing that, in a large set of charged and neutral N-heterocyclic carbene complexes of gold(I), a specific component of the NMR chemical shift tensor of the carbenic carbon provides a selective measure of the σ donation. This work opens the possibility of 1) to characterize unambiguously the electronic structure of a metal fragment (LAu(I)^n+/0 in this case) by actually measuring its σ-withdrawing ability, 2) to quickly establish a comparative trend for the ligand trans effect, and 3) to achieve a more rigorous control of the ligand electronic effect, which is a key aspect for the design of new catalysts and metal complexes.     

Inclusion of Enantiomeric Carvones in β-Cyclodextrin: a Variable Temperature 1H NMR Study in Aqueous Solution

In aqueous solution, the apparent association constant at room temperature for the 1 : 1 inclusion of S-(+)-carvone in - cyclodextrin is double of that for R-(-)-carvone, whereas, at 45 °C, both enantiomers have association constants two orders of magnitude smaller, with the S-(+) inclusion being then slightly weaker than the R-(-) encapsulation. Calculations carried out at the molecular mechanics, AM1 and STO-3G levels confirm the preferential inclusion of the S-enantiomer and provide important clues for understanding chiral discrimination by -cyclodextrin.     

13C NMR of carbonyl compounds -4. Solution conformation of β-ionone and related dienones

The steric factors relevant for the conformations of β-ionone and structurally related compounds were studied by dynamic n.m.r. and ¹H,¹H-NOE measurements.     

Characterizations of Some N—Substituted—salicylhydrazide in Mixtures by NMR Diffusion Ordered Spectroscopy

1 INTRODUCTION Metallacrown has emerged as inorganic host molecules. There has been considerable interest in metallacrown chemistry owing to its potential applications in chemically modified electrodes, anion-selective separation agents, liquid-crystal precursors and magnetic materials[1]. Multidentate ligands which can bridge two metal ions are used to synthesize metallacrowns. The cyclic repetition of the ligand bridging two metal ions generates the macrocyclic metal cluster. In the c…     

Hyperpolarized 13C NMR Spectroscopy of Urine Samples at Natural Abundance by Quantitative Dissolution Dynamic Nuclear Polarization

Hyperpolarized nuclear magnetic resonance (NMR) offers an ensemble of methods that remarkably address the sensitivity issues of conventional NMR. Dissolution Dynamic Nuclear Polarization (d-DNP) provides a unique and general way to detect ¹³C NMR signals with a sensitivity enhanced by several orders of magnitude. The expanding application scope of d-DNP now encompasses the analysis of complex mixtures at natural ¹³C abundance. However, the application of d-DNP in this area has been limited to metabolite extracts. Here, we report the first d-DNP-enhanced ¹³C NMR analysis of a biofluid -urine- at natural abundance, offering unprecedented resolution and sensitivity for this challenging type of sample. We also show that accurate quantitative information on multiple targeted metabolites can be retrieved through a standard addition procedure.     

Long-range13C—19F NMR spin-spin coupling in some α-trifluoromethyl-substituted polychloropyridines

High resolution¹³C NMR spectra of a series of -trifluoromethyl-substituted polychloropyridines were studied. Long-range¹³C—¹⁹F NMR spin-spin coupling through four and five bonds involving carbon atoms of the pyridine ring and the fluorine atom of the CF₃ group was found.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1973–1974, October, 1995.     

Trimethylsilylation - Aid in NMR Analysis of Oligosaccharides. Assigment of 29Si and 13C NMR Spectra of Trimethylsilylated Methyl β-D-Xylobiosides by 2D NMR

The ¹H, ¹³C and ²⁹Si NMR spectra of methyl β-D-xylopyranoside and three methyl β-D-xylopyranosyl-β-D-xylopyranosides have been measured and assigned by two-dimensional NMR spectroscopy. According to the determined proton-proton coupling constants, the ring conformer ratio is essential ly the same in the studied compounds. The assigned chemical shifts provide correct substituent chemical shifts for assignments in the spectra of higher trimethylsilylated xylooligosaccharides. Heteronuclear chemical shift correlated 2D NMR spectroscopy is proven to be a usable experimental method for ²⁹Si NMR line assignment in carbohydrates. The assigned silicon shifts identify the site of glycosidation.     

Study of entangled network formation in concentrated solutions of polymer by ~(13)C NMR

Information about the exact location of topological and cohesional entanglements at molecular level has been obtained by 13C NMR relaxation analysis. The results show that about 20% of the carbon atoms in the main chain are entangled in the 25% (by weight) solution, which is independent of the content of the 1,2-segment in polybutadiene and of the kind of solvent. However, the entanglement of the carbon atone on the end group of the side chain is very weak, they behave as slipping freely at the junctions.     

Studies of Molecular Motions of Ocotillol-Type Saponins in Solution by ~(13)C Nuclear Magnetic Relaxation

In this paper, the fully anisotropicoverall tumbling motions and side groups internal rotation of ocotillol-type saponins separated from the leaves of Panax Quidquefolium L. are investigated by ~(13)C nuclear magnetic relaxation. The fully anisotropic overall tumbling motion model with methyl conformation jumps internal rotation among three equivalent sites is presented, and the spectral density function of this model is derived. The rotation rates for overall tumbling motions to ocotillol-type saponins (OTS) are computed by Woessner's fully anisotropic overall tumbling motion model, and the internal rotation rate and barrier for side groups in OTS are calculated using free diffusion internal rotation model, restriction diffusion internal rotation model and conformation jumps internal rotation model, respectively.     

Solution dynamics of 5-fluorouracil entrapped in poly lactic-co-glycolic acid (PLGA) microsphere—A study with 1D selective NMR methods

In this report, our main focus is to introduce a set of one-dimensional (1D) NMR methods based on chemical shift, relaxation, and magnetization transfer, namely, NOE and chemical exchange involving selective pulse excitation to study the solution dynamics of drug in free and encapsulated state within polymeric microsphere. In this regard 5-fluorouracil (5-FU) loaded poly lactic-co-glycolic acid (PLGA) microspheres are prepared as model system via standard water-in-oil-in-water emulsification method. One-dimensional ¹H and ¹⁹F nuclear magnetic resonance (NMR) spectra of 5-FU in presence of PLGA microspheres presented a significant change in linewidth and relaxation rates compared with free 5-FU confirming encapsulation. Furthermore, loss of coupling pattern in ¹H and ¹⁹F NMR of PLGA encapsulated 5-FU as compared with free 5-FU suggests an enhanced –NH and –H₂O protons exchange dynamics in the interior of the microsphere indicating hydrated microsphere cavity. Quantification of exchange dynamics in case of free and PLGA-encapsulated 5-FU was attempted employing 1D selective NOESY and 1D multiply selective inversion recovery experiments. Analysis of the exchange rates confirmed existence of more than one kind of water population within the cavity as mentioned in an earlier solid state NMR report.     

High Resolution 1H and 13C NMR Resonance Assignments,Conformation and Solution Behavior of N-Phenyl (N-Phenyl-β-D-Glucopyranosylamine) Uronamide in DMSO

ABSTRACT

N-phenyl (N-phenyl-β-D-glucopyranosylamine) uronamide (1) and N-phenyl(N-phenyl-D-galactopyranosylamine) uronamide (2) spontaneously formed and precipitated (pH = 4.75 [aq]) in the presence of aniline upon C₆ activation with a carbodiimide reagent. In the presence of H₂O, 1 and 2 were hydrolyzed to N-phenyl-D-glucopyranuronamide (3) and N-phenyl-D-galacto-pyranuronamide (4), respectively, with a rate constant proportional to the concentration of H₂O, with compound 2 degrading 2-4 times faster than 1. We have unequivocally assigned both the ¹H and ¹³C NMR spectra for 1 using a combination of ¹H-¹H and ¹³C-¹H Chemical Shift-Correlation Spectroscopy as well as 2D nuclear Overhauser enhancement (nOe) and natural abundance 2D Double Quantum Transfer experiments. Scalar coupling constants for the directly-bonded pyranose protons of compounds 1 and 2, 2D nOe data as well as conformational energy minimization calculations indicated the sugar existed almost exclusively in DMSO as the ⁴C₁ conformer.     

Temperature Dependence of the Ratios of C—H (C—D) Bond Breaking Rates in Reactions of Cycloalkanes C5H10, C6H12, C6D12 with Adamantyl Carbocations in Sulfuric Acid

We have determined the differences in the parameters log A and E of the Arrhenius equations for the kinetic isotope effect (KIE) (c-C₆H₁₂/c-C₆D₁₂) and the 5/6 effect (c-C₅H₁₀/c-C₆H₁₂) in reactions of the C—H bonds of cycloalkanes with adamantyl (Ad⁺) carbocations (1-adamantanol in 92.8% H₂SO₄, 40-97 °C). We have established the compensation relations between log A and E for the kinetic isotope effect and the 5/6 effect for anthracene (AH⁺), hydroxymethyl (CH₂OH⁺), Ad⁺ carbocations and the hypothetical "infinitely strong reagent," supporting a hydride transfer mechanism in such reactions.     

Complexation Properties of a Carbon-Bridged Cryptand with Metal Ions in Aqueous Solution at 25°C

Abstract

Thermodynamic quantities (log K, ΔH, and ΔS) for the interactions of a carbon-bridged cryptand with Li⁺, Na⁺, K⁺, Ca²⁺, Sr²⁺, Ba²⁺, and Pb²⁺ were determined at 25° C by calorimetric titration in aqueous solution. The cryptand forms complexes with Na⁺, Sr²⁺, Ba²⁺, and Pb²⁺ with log K ≤ 2. Complexation was not detected for Li⁺, K⁺, and Ca²⁺. Weak interactions with Li⁺ and K⁺ and a log K value of 2.4 for Na⁺ suggest that the cavity size of the cryptand is close to that of Na⁺ but too small for K⁺ and too large for Li⁺. The carbon-bridged cryptand selectively binds Sr²⁺ (log K = 3.2) over Ca²⁺ and Ba²⁺ by more than one order of magnitude.     

Correlation of the 13C13C spin—spin coupling constants with the stretching force constants of single and double carbon—carbon bonds

Linear correlations between the spin—spin carbon—carbon coupling constants and the carbon—carbon stretching force constants for single and double bonds have been found through analysis of the available literature data. The corresponding equations are K^s_CC = 0.0344 J^s_CC+3.25 and K^d_CC = 0.180 J^d_CC−3.25 for single and double bonds respectively.     

Structural characterization and diffusional analysis of the inclusion complexes of fluoroadamantane with β-cyclodextrin and its derivatives studied via 1H, 13C and 19F NMR spectroscopy

This research conducts method development to study the diffusions of β-cyclodextrin and its derivatives (collectively called β-CDs) in biological systems. We proposed using fluoroadamantane (FA) β-CD inclusion complexes as a model system to study the diffusion of β-CDs by using ¹⁹F self-diffusion NMR technique. The use of ¹⁹F signal over ¹H signal arises from the advantage of being able to avoid the interference of ¹H signals from biological molecules and water. Another benefit of using FA is that the ¹⁹F relaxation times are not significantly influenced by viscous biological solutions due to the tumbling nature of FA in β-CD cavities. To synthesize the FA β-CD inclusion complexes, a FA THF (tetrahydrofuran) solution and a β-CD water solution were mixed together followed by lyophilization. The formation of the inclusion complexes in water were determined using HMQC and ROESY NMR experiments with the assistance of molecular modeling. To assess the method, both ¹H and ¹⁹F diffusion NMR were carried out to study the diffusions of four typical FA β-CD inclusion complexes. The results of this study illustrate that the diffusion coefficients obtained from the FA ¹⁹F signal truly measure those of the β-CDs’ diffusion coefficients in water. Thus, the proposed technique using our model system is valid to be used to study the diffusions of β-CDs in biological systems.