A 1H NMR and molecular modelling investigation of diastereotopic methylene hydrogen atoms

The ¹H NMR spectra of methyl 3‐bromo‐2‐methylpropionate (1a) and the corresponding chloro compound (2a) show no long‐range coupling between the methyl and methylene protons. In contrast, in the analogous dihalocompounds, methyl 2,3‐dibromo‐2‐methylpropionate (1b) and methyl 2,3‐dichloro‐2‐methylpropionate (2b), one of the methylene protons exhibits a large ⁴J_HH coupling (0.8 Hz) to the methyl group, but the other proton shows no observable splitting. This can be explained quantitatively by calculations of the conformational preferences in these compounds combined with the known orientation dependence of the ⁴J_HHcouplings. One conformer predominates in the dihalo compounds 1b and 2b, and this is responsible for the ⁴J_HH coupling. In 1a and 2a all three conformers are populated and the ⁴J_HH couplings average to zero. The technique is a potentially general method of unambiguously assigning diastereotopic methylene protons. Copyright © 2002 John Wiley & Sons, Ltd.     

Multinuclear NMR Studies and Spin System Analyses on Dibenzo[c.e][1,2]Oxaphosphorine 2‐Oxides

2H‐Dibenzo[c.e][1,2]oxaphosphorine 2‐oxide (HDOPO), 2‐(N,N‐diethylamino)‐dibenzo[c.e][1,2]oxaphosphorine 2‐oxide (DEADOPO), and 2‐ethoxy‐dibenzo[c.e][1,2]oxaphosphorine 2‐oxide (EtODOPO) are fully characterized in CDCl₃ by ¹H, ¹³C, ³¹P, and ¹⁵N NMR spectroscopy on 800‐ and 500‐MHz instruments. A strategy enabling their unambiguous signal assignment is presented, with special emphasis on 2D ¹H,¹³C HMBC spectra. Additional line‐shape iterations of the aromatic ¹H multiplets (ABCDX and ABCDEX spin systems) provided all long‐range ⁿJ_H,H and ⁿJ_P,H coupling constants with utmost precision. The experimental results augmented with those of the model compound phenylphosphonous acid clearly demonstrate that ⁿJ_H,H couplings of the PH proton as well as the ⁿJ_P,C values do not decrease in a monotonic manner with the number of intervening bonds from the phosphorus atom. This fact may potentially lead signal misassignments, if the analysis starts out from the coupling constants, as it occurred for HDOPO in the recent publication by Wagner et al. (Phosphorus, Sulfur and Silicon, 187, 2012, 781–798). The corrected assignment will be given in the present paper. Finally, the A₂M₃X or ABM₃X type ¹H spectral patterns of ethyl groups are also analyzed and explicit equations are derived to evaluate the strongly coupled ABM₃X multiplets in EtODOPO.     

Synthesis and Characterization of Nickel(II) Complex Containing 2‐(t‐Butylaminomethyl)pyrrole

Two aminopyrroles, 2‐(t‐butylaminomethyl)pyrrole ( HL1 ) and 2, 5‐di(t‐butylaminomethyl)pyrrole ( HL2 ), were synthesized and the hydrogen‐bond interactions were observed in the single‐crystal X‐ray structures of HL1 ·HCl and HL2. Bis[2‐(t‐butylaminomethyl)pyrrole]nickel( II ) [ Ni(L1) ₂] was prepared by treatment of the NiCl₂ with 2 equiv. of mono‐deprotonated HL1 in THF solvent. The solid‐state structure of Ni(L1) ₂ shows the N₄‐coordinated nickel atom, with a geometry corresponding to a square‐planar structure, in which two intramolecular C‐H···Ni interactions are present at the axial positions with contact distances of 2.77 Å. The complex displays an irreversible reduction response at ?0.66 V (vs. Fc⁺/Fc) in CH₃CN. Furthermore, ¹H, ¹³C‐HSQC NMR experiments performed at room temperature revealed that the two methylene protons of the chelating L1^?1 are chemically nonequivalent and one of them is coupled to the amino proton. The coupling constants (J_HH') observed are close to the values predicted from the vicinal Karplus correlation diagram.     

Conformational Analysis of the Anti‐obesity Drug Lorcaserin in Water: How To Take Advantage of Long‐Range Residual Dipolar Couplings

The conformational state of 8‐chloro‐1‐methyl‐2,3,4,5‐tetrahydro‐1H‐3‐benzazepine hydrochloride (lorcaserin) in water has been determined on the basis of one‐bond and long‐range C? H residual dipolar coupling (RDC) data along with DFT computations and ³J_HH coupling‐constant analysis. According to this analysis, lorcaserin exists as a conformational equilibrium of two crown‐chair forms, of which the preferred conformation has the methyl group in an equatorial orientation.     

Equation de Karplus et l'Hybridation du Carbone. Correlation de la Constante de Couplage Vicinale 3J(Hi,Hj) et la Somme de Constantes de Couplages 1J(C,H)

The vicinal coupling constant ¹H? ¹H exhibits a marked hybridization dependence. The coupling constants ¹³C? ¹H could be used to correlate the Karplus type equation for calculation of ³J(Hi, Hj). The correction term to this equation is proposed.     

1H NMR investigations on the conformation of the spirodioxolanes derived from vicinal diols. II—The ketal of cyclohexanone and racemic 1,2-propanediol

The methylene, methine and methyl protons at C-2 and C-3 from the dioxolane moiety in 2-methyl-1,4-dioxaspiro[4.5]decane constitute an ABMX₃ coupling system. The analysis data obtained and, also, the application of the Karplus rule to the value of the J(AB) vicinal coupling constant, confirm the axial orientation of the A methine proton and the pseudoequatorial orientation of the B methylene proton. These findings agree with a ‘half-chair’ conformation of the 1,3-dioxolane ring.     

Computer‐Assisted 3D Structure Elucidation (CASE‐3D): The Structural Value of 2JCH in Addition to 3JCH Coupling Constants

We present a method to use long‐range CH coupling constants to derive the correct diastereoisomer from the molecular constitution of small molecules. A set of 79 ²J_CH and ³J_CH values collected from a single HSQMBC experiment on a sample of strychnine were used in the CASE‐3D (computer‐assisted 3D structure elucidation) protocol. In addition to the most commonly used ³J_CH coupling constants, the subset of 32 ²J_CH values alone showed an excellent degree of configuration selection. The study is mainly based on comparison of DFT‐calculated ^2,3J_CH values with experimental ones, critical for the case of ²J_CH. But the configuration selection also works well using ³J_CH values predicted from a semi‐empirical Karplus‐based equation limited to H?C?C?C fragments. The robustness, shown using strychnine as a proof of concept, makes the J‐based CASE‐3D analysis a viable option for the application in fields such as peptide and carbohydrate research, organic synthesis, natural‐product identification and analysis, as well as medicinal chemistry.     

The Effect of Fluoro Substitution upon the β‐Hairpin Fold of a β‐Tetrapeptide in Methanol

The importance of β‐peptides lies in their ability to mimic the conformational behavior of α‐peptides, even with a much shorter chain length, and in their resistance to proteases. To investigate the effect of substitution of β‐peptides on their dominant fold, we have carried out a molecular‐dynamics (MD) simulation study of two tetrapeptides, Ac‐(2R,3S)‐β^2,3hVal(αMe)‐(2S)‐β²hPhe‐(R)‐β³hLys‐(2R,3S)‐β^2,3‐Ala(αMe)‐NH₂, differing in the substitution at the C_α of Phe2 (pepF with F, and pepH with H). Three simulations, unrestrained (UNRES), using ³J‐coupling biasing with local elevation in combination with either instantaneous (INS) or time‐averaging (AVE) NOE distance restraining, were carried out for each peptide. In the unrestrained simulations, we find three (pepF) and two (pepH) NOE distance bound violations of maximally 0.22 nm that involve the terminal residues. The restrained simulations match both the NOE distance bounds and ³J‐values derived from experiment. The fluorinated peptide shows a slightly larger conformational variability than the non‐fluorinated one.     

A Karplus Equation for the Conformational Analysis of Organic Molecular Crystals

Vicinal scalar couplings (³J) are extensively used for the conformational analysis of organic compounds in the liquid state through empirical Karplus equations. In contrast, there are no examples of such use for the structural investigation of solids. With the support of first principles calculations, we demonstrate here that ¹³C‐¹³C ³J coupling constants (³J_CC) measured on a series of isotopically enriched solid amino acids and sugars can be related to dihedral angles by a simple Karplus‐like relationship, and we provide a parameterized Karplus function for the conformational analysis of organic molecular crystals. Under the experimental conditions discussed, torsional angles can be estimated from the experimental ³J_CC values with an accuracy of 10° using this function. These results open new perspectives towards the use of ³J_CC as a new analytical tool that could considerably simplify structure determination of functional organic solids.     

Etude par Résonance Magnétique Nucléaire de dérivés phosphores. Etude de dithiaphospholanes-1,3,2

The proton NMR spectral analysis of eight different 1,3,2-dithiaphospholanes with various groups attached to the phosphorus atom has been performed. The AA′BB′X (X phosphorus atom) system shows that the two ³J(P? S? C? H) coupling constants have a small magnitude and opposite signs. Using the ³J(HH) values, the torsion about the C₄—C₅ bond has been evaluated. The conformational requirements in the two isomers of the 2 phenyl-4-methyl-1,3,2-dithiaphospholane are also discussed.     

Conformation analysis of d‐glucaric acid in deuterium oxide by NMR based on its JHH and JCH coupling constants

d ‐Glucaric acid (GA) is an aldaric acid and consists of an asymmetric acyclic sugar backbone with a carboxyl group positioned at either end of its structure (i.e., the C1 and C6 positions). The purpose of this study was to conduct a conformation analysis of flexible GA as a solution in deuterium oxide by NMR spectroscopy, based on J‐resolved conformation analysis using proton–proton (³J_HH) and proton–carbon (²J_CH and ³J_CH) coupling constants, as well as nuclear overhauser effect spectroscopy (NOESY). The ²J_CH and ³J_CH coupling constants were measured using the J‐resolved heteronuclear multiple bond correlation (HMBC) NMR technique. NOESY correlation experiments indicated that H2 and H5 were in close proximity, despite the fact that these protons were separated by too large distance in the fully extended form of the chain structure to provide a NOESY correlation. The validities of the three possible conformers along the three different bonds (i.e., C2? C3, C3? C4, and C4? C5) were evaluated sequentially based on the J‐coupling values and the NOESY correlations. The results of these analyses suggested that there were three dominant conformers of GA, including conformer 1 , which was H2H3:gauche, H3H4:anti, and H4H5:gauche; conformer 2 , which was H2H3:gauche, H3H4:anti, and H4H5:anti; and conformer 3 , which was H2H3:gauche, H3H4: gauche, and H4H5:anti. These results also suggested that all three of these conformers exist in equilibrium with each other. Lastly, the results of the current study suggested that the conformational structures of GA in solution were ‘bent’ rather than being fully extended. Copyright © 2016 John Wiley & Sons, Ltd.     

Karplus-type relationships between scalar coupling constants: 3JHH molecular versus 4hJHH supramolecular coupling constants

The ³J_HH coupling constants in six H–X–Y–H systems (ethane, methylamine, methanol, hydrazine, hydroxylamine and hydrogen peroxide) and ^4hJ_HH coupling constants in four H–...XH...Y–H, namely [H₃NHNH₃]⁺ (two arrangements), HOHNH₃ and HOHOH₂ have been calculated theoretically as a function of the torsion angle . For covalent situations, the corresponding Karplus equations have been fitted to calculated ³J_HH=acos2 +bcos +c. The a, b and c terms have been analyzed as a function of the electronegativities of X and Y. In the case of ammonium/ammonia complexes (proton shared and not), water/ammonia, and water dimer the values are low (maximum 0.5 Hz) but follow closely a Karplus relationship. Supplementary material is available in the online version of this article at Electronic Supplementary Material Supplementary material is available in the online version of this article at     

Selective COSY‐J‐resolved‐HMBC,a new method for improving sensitivity of cross peaks of methine proton signals attached to a methyl group

Improved pulse sequences for measuring long‐range C‐H coupling constants (ⁿJ_C‐H), named selective COSY‐J‐resolved HMBC‐1 and ?2, have been developed. In the spin systems, such as ‐CH_C‐CH_A(CH₃)‐CH_B‐, a methine proton H_A splits into a multiplet owing to several vicinal couplings with protons, resulting in attenuation of its cross‐peak intensity. Therefore, the measurements of ⁿJ_C‐H with H_A are generally difficult in the J‐resolved HMBC or selective J‐resolved HMBC spectrum. With the aim of accurate measurements of ⁿJ_C‐H in such a spin system, we have developed new pulse sequences, which transfer the magnetization of a methyl group to its adjacent methine proton. The proposed pulse sequences successfully enable to enhance the sensitivity of H_A cross peak in comparison with the selective J‐resolved HMBC pulse sequence. Copyright © 2012 John Wiley & Sons, Ltd.     

Intermolecular Interaction and Magnetic Coupling Mechanism of a Mononuclear Nickel(II) Complex

The mononuclear complex [Ni(HOphen)(OSO₃)(H₂O)₃] · 5H₂O (HOphen = 1, 10‐phenanthrolin‐2‐ol) was prepared and its single structure was determined by X‐ray crystallography. In this complex, the Ni^II ion has a distorted octahedral arrangement. Crystal structure analysis shows that two kinds of π–π stacking interactions and C–H ··· O short contact intermolecular interactions exist among the adjacent complexes. Fitting to the variable‐temperature magnetic susceptibility data gave the magnetic coupling constant, 2J = –0.98 cm^–1. Theoretical calculations, based on density functional theory (DFT) coupling with the broken‐symmetry approach (BS), revealed that the π–π stacking magnetic coupling pathways resulted in weak ferromagnetic interactions with 2J = 4.86 cm^–1 and 2J = 4.16 cm^–1, respectively, for the adjacent Ni^II ions with separations of 8.568(19) Å and 8.749(32) Å, respectively; whereas the magnetic coupling pathway of the C–H ··· O short contact intermolecular interaction led to a weak antiferromagnetic interaction with 2J = –17.62 cm^–1 for the adjacent Ni^II ions with a separation of 10.291(26) Å. The ferromagnetic coupling sign can be explained by the McConnell I spin‐polarization mechanism.     

BASHD‐J‐resolved‐COSY: a new method for measuring proton‐proton spin coupling constants of multiplet signals

An effective pulse sequence for measuring H–H coupling constants, named BASHD‐J‐resolved‐COSY, has been developed. In the spin systems such as –CH_A–CH_B(CH₃)–CH_C–, a methine proton H_B splits into a multiplet owing to several vicinal couplings, resulting in attenuation of its cross‐peak intensity. Therefore, the measurements of ³J_H–H with respect to H_B are generally difficult in the E‐COSY‐type experiments. With the aim of accurate measurements of ³J_H‐H in such a spin system, we have developed a new pulse sequence, which selectively decouples the secondary methyl group. The proposed pulse sequence provides the simplified cross‐peak patterns, which are suitable for reliable measurements of ³J_H‐H in a complicated natural product. Copyright © 2012 John Wiley & Sons, Ltd.     

Elucidating heteroatom influence on homonuclear 4J(H,H) coupling constants by DFT/NMR approach

We report the structural dependency of long range scalar J-coupling constant across four bonds as function of the dihedral angles Φ1 and Φ3. The calculated homonuclear coupling constants ⁴J(_H,H), obtained at a density functional theory level, were measured between C(1)─X(2) and X(2)─C(3) bonds in three-term models, where C, N, O, and S were systematically used as the second atom of the alkyl structures ( 1 - 4 ). The ⁴J_(H,H) calculated values, tabulated for variation of 30° for both Φ1 and Φ3, have disclosed an unexpected detectable coupling constant (⁴J(_H,H) ≥ 1 Hz) across heteroatoms, useful to provide valuable structural information. A 2-methyl-1,3-dithiane sulfide ( 5 ) was used as a case study to prove the applicability and reliability of the calculated values to real issues. The ⁴J(_H,H) values obtained at density functional theory for the system 4 have reproduced with good accuracy an unexpected experimental ⁴J(_H2ax-H4ax) = 1.01 Hz of sulfide molecule ( 5 ), suggesting these calculated coupling constant values as a new powerful tool for the organic synthesis and stereochemical analysis.     

Conformational Analysis of Fluorinated Pyrrolidines Using 19F–1H Scalar Couplings and Heteronuclear NOEs

A series of 3‐fluoropyrrolidines have been studied to investigate the influence of the stereoelectronic fluorine gauche effect on ring conformations in the solid state by single‐crystal X‐ray analysis and in solution phase by NMR spectroscopy. As part of these studies 1D ¹⁹F–¹H heteronuclear NOE (HOESY) experiments have been optimised for applications to small molecules and are described in detail. These have been employed to estimate ¹⁹F–¹H internuclear distances and were combined with vicinal ³J(F,H) and ³J(H,H) scalar coupling constants to analyse the ring conformations. Where possible the derived solution‐phase structural data have been compared with those of the crystalline state. The results demonstrate the influence of the gauche effect in stabilising C^γ‐exo conformations of the fluorinated pyrrolidines. It was further shown that when steric interactions were also present, this conformational bias was diminished and the contribution of the alternative C^γ‐endo conformation was seen to increase in solution at lower sample temperatures.     

Interactions intramoléculaires: XXIII—Constantes de couplage et interactions gauches avec un groupement t-butyle (cyclohexanones disubstituées 3, 4)

The ¹H NMR spectra of a series of cis and trans-3R,4 X-cyclohexanones (-2,2,6,6-d₄) are analysed. By comparison of their ³J coupling constants with those of cyclohexane homologues we obtain information about the chair–chair equilibrium constants for R = CH₃, X = CN, the chair structure of cis isomers with an equatorial t-butyl group, and a conformational heterogeneity with trans (CH₃)₃C and CN groups. This latter situation is analysed by means of a simplified but controlled Karplus relationship, on the basis of a mixture of two conformers; this involves a diequatorial chair and a boat form with a dihedral angle Φ₃₄ of about ?6°.     

Conformational Preferences of a β‐Octapeptide as Function of Solvent and Force‐Field Parameters

The ability to design properly folded β‐peptides with specific biological activities requires detailed insight into the relationship between the amino acid sequence and the secondary and/or tertiary structure of the peptide. One of the most frequently used spectroscopic techniques for resolving the structure of a biomolecule is NMR spectroscopy. Because only signal intensities and frequencies are recorded in the experiment, a conformational interpretation of the recorded data is not straightforward, especially for flexible molecules. The occurrence of conformational and/or time averaging, and the limited amount and accuracy of experimental data hamper the precise conformational determination of a biomolecule. In addition, the relation between experimental observables with the underlying conformational ensemble is often only approximately known, thereby aggravating the difficulty of structure determination of biomolecules. The problematic aspects of structure refinement based on NMR nuclear Overhauser effect (NOE) intensities and ³J‐coupling data are illustrated by simulating a β‐octapeptide in explicit MeOH and H₂O as solvents using three different force fields. NMR Data indicated that this peptide would fold into a 3₁₄‐helix in MeOH and into a hairpin in H₂O. Our analysis focused on the conformational space visited by the peptide, on structural properties of the peptide, and on agreement of the MD trajectories with available NMR data. We conclude that 1) although the 3₁₄‐helical structure is present when the peptide is solvated in MeOH, it is not the only relevant conformation, and that 2) the NMR data set available for the peptide, when solvated in H₂O, does not provide sufficient information to derive a single secondary structure, but rather a multitude of folds that fulfill the NOE data set.     

BASHD‐J‐resolved‐HMBC,an efficient method for measuring proton–proton and heteronuclear long‐range coupling constants

Natural products often possess various spin systems consisting of a methine group directly bonded to a methyl group (e.g. –CH_a–CH_b(CH₃)–CH_c–). The methine proton H_b splits into a broadened multiplet by coupling with several vicinal protons, rendering analysis difficult of ⁿJ_C–H with respect to H_b in the J‐resolved HMBC‐1. In purpose of the reliable and easy measurements of ⁿJ_C–H and ⁿJ_H–H in the aforesaid spin system, we have developed a new technique, named BASHD‐J‐resolved‐HMBC. This method incorporates band selective homo decoupled pulse and J‐scaling pulse into HMBC. In this method, high resolution cross peaks can be observed along the F₁ axis by J‐scaling pulse, and band selective homo decoupled pulse simplified multiplet signals. Determinations of ⁿJ_C–H and ⁿJ_H–H of multiplet signals can easily be performed using the proposed pulse sequence. Copyright © 2013 John Wiley & Sons, Ltd.