Suzuki-Miyaura coupling for general synthesis of dehydrocoelenterazine applicable for 6-position analogs directing toward bioluminescence studies

Synthesis of coelenterazine analogs is in recent demand to supply more luminescent compounds with reasonable stability as substrate for the photoprotein manipulated in a living cells or particular organelle. There are limited methods for the synthesis of 6-substituted coelenterazine due to the route and instability of the compounds under the existing conditions. This paper describes six examples including Suzuki-Miyaura cross coupling reaction with reactive triflate (unstable) and stable tosylate intermediates of the imidazo[1,2-a]pyrazin-3-one. Five examples of 2-amino-3-benzyl-5-O-Tf-pyrazine are also discussed. The product coelenterazine analogs are obtained in the form of dehydrocoelenterazine, which is the substrate of a squid photoprotein, symplectin.     

Time-dependent density functional theory study on optical properties of GaN doped with alkaline-earth atom

The absorption and the emission spectra of GaN and (Ga,AE)N (AE = Be, Mg, Ca) were calculated by using TDDFT method with cluster model. The calculation results show that Ga₂₆N₂₆H₅₀ cluster only has very weak absorption but has some emission bands in visible region. The band-to-band emission appears around 3.56 eV. If alkaline-earth atoms (Be, Mg and Ca) are doped into GaN, the blue emission band around 3.0 eV appears. Thereinto, Ga₂₅Ca₁N₂₆H₅₀ cluster shows a weaker yellow emission band and a stronger blue one (2.92 eV), which make (Ga,Ca)N material a promising candidate to emit blue light.     

Shining the light: the mechanism of the bioluminescence reaction of calcium-binding photoproteins

The Cat²⁺-binding photoproteins from jellyfish have the unique ability to emit blue light in the presence of calcium ions but without molecular oxygen or any other cofactor. Although there is no crystallographic data on the structure of the photoprotein complex, structure-activity studies have elucidated many features of the complex and many aspects of the mechanism of the bioluminescence reaction.     

Development and validation of an ultra‐performance convergence chromatography method for the quality control of Angelica gigas Nakai

Ultra‐performance convergence chromatography, which integrates the advantages of supercritical fluid chromatography and ultra high performance liquid chromatography technologies, is an environmentally friendly analytical method that uses dramatically reduced amounts of organic solvents. An ultra‐performance convergence chromatography method was developed and validated for the quantification of decursinol angelate and decursin in Angelica gigas using a CSH Fluoro‐Phenyl column (2.1 mm × 150 mm, 1.7 μm) with a run time of 4 min. The method had an improved resolution and a shorter analysis time in comparison to the conventional high‐performance liquid chromatography method. This method was validated in terms of linearity, precision, and accuracy. The limits of detection were 0.005 and 0.004 μg/mL for decursinol angelate and decursin, respectively, while the limits of quantitation were 0.014 and 0.012 μg/mL, respectively. The two components showed good regression (correlation coefficient (r²) > 0.999), excellent precision (RSD < 2.28%), and acceptable recoveries (99.75–102.62%). The proposed method can be used to efficiently separate, characterize, and quantify decursinol angelate and decursin in Angelica gigas and its related medicinal materials or preparations, with the advantages of a shorter analysis time, greater sensitivity, and better environmental compatibility.     

Photocatalytic properties of CuO/(001)‐TiO2 composites synthesized by the vapor–thermal method

Composites of (001)‐face‐exposed TiO₂ ((001)‐TiO₂) and CuO were synthesized in water vapor environment at 250°C with various Cu/Ti molar ratios (R_Cu/Ti). The resulting CuO/(001)‐TiO₂ composites were characterized using a variety of techniques. The synthesis under high‐temperature vapor allows close contact between CuO and (001)‐TiO₂, which results in the formation of heterojunctions, as evidenced by the shift of valence band maximum towards the forbidden band of TiO₂. An appropriate ratio of CuO can enhance the absorption of visible light and promote the separation of photogenerated carriers, which improve the photocatalytic performance. The degradation rate constant K_app increased from 5.5 × 10^?2 to 8.1 × 10^?2 min^?1 for R_Cu/Ti = 0.5. Additionally, the results showed that superoxide radicals (^?O₂^?) play a major role in the photocatalytic degradation of methylene blue.     

Identification of flavonoids in Dendrobium huoshanense and comparison with those in allied species of Dendrobium by TLC,HPLC and HPLC coupled with electrospray ionization multi‐stage tandem MS analyses

Dendrobium huoshanense, a unique species in the genus Orchidaceae, is only found in China and is known as “mihu”. Due to the lack of quality control, the use of D. huoshanense in the herbal market has been limited. In this study, methods based on thin‐layer chromatography, high‐performance liquid chromatography and high‐performance liquid chromatography coupled with electrospray ionization multi‐stage tandem mass spectrometry were used to identify the flavonoids in D. huoshanense and distinguish this species from other Dendrobium species. Using thin‐layer chromatography, a characteristic band was observed for D. huoshanense, and this band was absent from the thin‐layer chromatography plates of other Dendrobium species. Then, using high‐performance liquid chromatography, nine peaks of flavonoids were observed in the chromatograms of ten batches of D. huoshanense. Ultimately, 22 flavonoids in D. huoshanense were identified by multi‐stage tandem mass spectrometry, and 11 of these compounds are being reported from D. huoshanense for the first time. In addition, two compounds both with molecular weights of 710, were identified as being unique to D. huoshanense; one of these compounds, apigenin‐6‐C‐α‐L‐rhamnosyl‐(1→2)‐β‐D‐glucoside‐8‐C‐α‐L‐arabinoside, was proven to be responsible for the characteristic thin‐layer chromatography band of D. huoshanense. These analysis methods can be applied for the identification and quality control of D. Huoshanense.     

Photoluminescent,liquid‐crystalline,and electrochemical properties of para‐phenylene‐based alternating conjugated copolymers

Novel liquid‐crystalline alternating conjugated copolymers [ P(P(6)CN‐alt‐Cz) and P(P(6)CN‐alt‐MeP) ] with phenylene and carbazolylene or phenylene with methyl substitution onto the main chain have been synthesized through palladium‐catalyzed Suzuki coupling reactions. The influence of the incorporation of carbazolylene and the substituted phenylene into the main chain on the thermal, mesomorphic, and luminescent properties has been investigated by Fourier transform infrared spectroscopy, thermogravimetry, differential scanning calorimetry, polarized optical microscopy, ultraviolet–visible spectroscopy, photoluminescence (PL), and cyclic voltammetry. These polymers show highly thermal stability, losing little of their weights when heated to 360 °C. The conjugated copolymers exhibit liquid crystallinity at elevated temperature. The existence of the chromophoric terphenyl core endows the copolymers with high PL and the polymer P(P(6)CN‐alt‐Cz containing carbazolylene unit can emit more pure blue light. All the copolymer films with low band gaps about 2.3–2.4 eV undergo reversible oxidation and reduction processes, significantly lower than the band gap of poly(p‐phenylene). © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 434–442, 2010     

An optical, EPR and electrical conductivity study of blue barium titanate, BaTiO3−δ

The electronic UV–VIS–NIR absorption spectra of single crystalline BaTiO_3−δ (BTO) are studied in the temperature range of 102–1173 K in pure oxygen and at conditions of moderate and strong reduction of the material. The strongly reduced crystals are of deep blue colour. The optical spectra of blue BTO are characterised by a strong absorption in the NIR region at around 7000 cm⁻¹, which is attributed to polaronic defects associated with the formation of Ti³⁺ in the material. This assumption is supported by fits of the spectra using polaronic line shape functions appropriate for disordered systems and also by the electrical conductivity of blue BTO which, in agreement with results from the optical spectra, exhibits an activation energy of 0.20 eV. The EPR spectra of moderately reduced BTO powders show an anisotropic g-factor, which is compatible with the optical spectrum. The temperature dependence of the band gap energy of BTO was found to be given as dE_g/dT = −7.21 × 10⁻⁴ eV/K.     

Thermal,Magnetic, Electronic,and Superconducting Properties of Rare‐Earth Metal Pentagermanides REGe5 (RE = La,Nd, Sm,Gd) and Synthesis of TbGe5

A series of isotypic rare‐earth metal pentagermanides including the new compound TbGe₅ were prepared by high‐pressure synthesis. They crystallize in the orthorhombic space group Immm [No. 71; a = 395.70(9) pm; b = 611.1(2) pm, and c = 983.6(3) pm for TbGe₅]. The crystal structure is isotypic to LaGe₅ and consists of puckered germanium slabs, which sandwich a second germanium species and the rare‐earth metal atoms. At ambient pressure, the thermal decomposition of the phases REGe₅ (RE = La, Nd, Sm, Gd, and Tb) proceeds via discrete intermediate steps into Ge(cF8) and thermodynamically stable germanium‐poorer phases. The investigated compounds REGe₅ are paramagnetic metallic conductors, which order antiferromagnetically at low temperatures. Specific heat measurements reveal that the superconducting state of LaGe₅ below T_c = 7.1(1) K is characterized by a critical field of μ₀H_c2 = 0.2 T and weak electron‐phonon coupling. Density‐functional based band‐structure calculations yield a very similar electronic structure for all the isotypic REGe₅ compounds. Besides a slight increase in the width of the valence band for smaller RE atoms, only minor differences are found for the two different germanium environments.     

Effects of gamma irradiation on the yields of volatile extracts of Angelica gigas Nakai

The study was carried out to determine the effects of gamma irradiation on the volatile flavor components including essential oils, of Angelica gigas Nakai. The volatile organic compounds from non- and irradiated A. gigas Nakai at doses of 1, 3, 5, 10 and 20 kGy were extracted by a simultaneous steam distillation and extraction (SDE) method and identified by GC/MS analysis. A total of 116 compounds were identified and quantified from non- and irradiated A. gigas Nakai. The major volatile compounds were identified 2,4,6-trimethyl heptane, α-pinene, camphene, α-limonene, β-eudesmol, α-murrolene and sphatulenol. Among these compounds, the amount of essential oils in non-irradiated sample were 77.13%, and the irradiated samples at doses of 1, 3, 5, 10 and 20 kGy were 84.98%, 83.70%, 83.94%, 82.84% and 82.58%, respectively. Oxygenated terpenes such as β-eudesmol, α-eudesmol, and verbenone were increased after irradiation but did not correlate with the irradiation dose. The yields of active substances such as essential oil were increased after irradiation; however, the yields of essential oils and the irradiation dose were not correlated. Thus, the profile of composition volatiles of A. gigas Nakai did not change with irradiation.     

Effect of annealing temperature on the structural and optical properties of Zn1−xMgxO particles prepared by oxalate precursor

Zn_1−xMg_xO particles were prepared using zinc and magnesium oxalate precursor by co-precipitated method. The lattice constants of Zn_1−xMg_xO proved that the interstitial Mg formed at 500 °C and Mg replaced Zn in ZnO tetrahedral coordination at 800 °C. Compared with the ZnO, the absorbing band edge of the Zn_1−xMg_xO displayed blue shifts. The room temperature photoluminescence was similar to ZnO and variation of Mg content did not change the shape or peak position of the emission spectra markedly when it was annealed at 500 °C. However, its blue emission band disappeared, and a relatively strong green light emission at 498 nm appeared after annealed at 800 °C. The photoluminescence intensity ratios I_(green)/I_(UV) of Zn_1−xMg_xO varied with Mg content and the green light emission peak shifted from 498 nm to 472 nm when Mg content increased from 0 to 2.0 at.%.     

Synthesis of the Dy: SrMoO4 with High Photocatalytic Activity under Visible Light Irradiation

Dysprosium (Dy)‐doping SrMoO₄ (with different molar ratio of Dy/Sr = 0/100, 10/100, 15/100 and 20/100) have been synthesized by high temperature thermal decomposition of metal–organic salt in organic solvent with a high boiling point. Their structures, morphology, and optical properties were characterized by X‐ray diffraction (XRD), high‐resolution tuning electron microscopy ((HR)TEM), X‐ray photo‐electron spectroscopy (XPS), and UV–vis diffuse reflectance spectroscopy (UV–vis DRS). Using this method, the pure phase, nano‐size, and low band gap of SrMoO₄ sample are obtained. The results shows that the size of as‐synthesized SrMoO₄ nanoparticles was about 200 nm. The band gap of Dy‐doped SrMoO₄ ranges from 3.76–3.90 eV, and decreases with increasing Dy concentration. The photocatalytic performance of as‐syntheszied products were determined from the degradation of methylene blue (MB) by UV–vis light irradiation. The 15 mol%Dy‐doped SrMoO₄ sample shows the best performance for photocatalytic degradation of methyl blue of nearly 100% in 120 min under visible irradiation, which is higher than most of those reported before. The present work is meaningful for revealing the underlying mechanism in photocatalyst and improving the photocatalytic performance.     

Synthesis,Structure, and Properties of Scandium Dysprosium Antimonide ScDySb

Scandium dysprosium antimonide ScDySb was synthesized from scandium metal and DySb in an all‐solid state reaction at 1770 K. According to X‐ray analysis of the crystal structure [P4/nmm, Z = 4, a = 430.78(1) pm, c = 816.43(4) pm, R₁ = 0.0238, wR(all) = 0.0688, 268 independent reflections], ScDySb adopts the anti‐PbFCl type of structure, but with pronounced deviations in structural details, which are related to specific bonding interactions between the atoms involved. ScDySb shows antiferromagnetic ordering below 35.4 K, which was verified by susceptibility, heat capacity, and resistivity measurements. X‐ray structure determination, performed at 30 K, showed no significant structural changes to occur during the magnetic phase transition. The band structure was calculated in the framework of Density Functional Theory. The bonding properties are comparable to those of Sc₂Sb. Pronounced basins of the Electron Localization Function (ELF) appear in the tetragonal pyramidal Sc₄Dy voids.     

Strong red emissions induced by Pt–Pt interactions in binuclear cycloplatinated(II) complexes containing bridging diphosphines

A series of dinuclear cycloplatinated(II) complexes with general closed formula of [Pt₂Me₂(C^N)₂(μ‐P^P)] (C^N = 2‐vinylpyridine (Vpy), 2,2′‐bipyridine N‐oxide (O‐bpy), 2‐(2,4‐difluorophenyl)pyridine (dfppy); P^P = 1,1‐bis(diphenylphosphino)methane (dppm), N,N‐bis(diphenylphosphino)amine (dppa)) are reported. The complexes were characterized by means of NMR spectroscopy. Due to the presence of dppm and dppa with short backbones as bridging ligands, two platinum centres are located in front of each other in these complexes so a Pt…Pt interaction is established. Because of this Pt…Pt interaction, the complexes have bright orange colour under ambient light and are able to strongly emit red light under UV light exposure. These strong red emissions originate from a ³MMLCT (metal–metal‐to‐ligand charge transfer) electronic transition. In most of these complexes, the emissions have unstructured bell‐shaped bands, confirming the presence of large amount of ³MMLCT character in the emissive state. Only the complexes bearing dfppy and dppa ligands reveal dual luminescence: a high‐energy structured emission originating from ³ILCT/³MLCT (intra‐ligand charge transfer/metal‐to‐ligand charge transfer) and an unstructured low‐energy band associated with ³MMLCT. In order to describe the nature of the electronic transitions, density functional theory calculations were performed for all the complexes.     

A Novel Catalytic Function of Synthetic IgG‐Binding Domain (Z Domain) from Staphylococcal Protein A: Light Emission with Coelenterazine

The synthetic IgG‐binding domain (Z domain) of staphylococcal protein A catalyzes the oxidation of coelenterazine to emit light like a coelenterazine‐utilizing luciferase. The Z domain derivatives (ZZ‐gCys, Z‐gCys and Z‐domain) were purified and the luminescence properties were characterized by comparing with coelenterazine‐utilizing luciferases, including Renilla luciferase, Gaussia luciferase and the catalytic 19 kDa protein of Oplophorus luciferase. Three Z domain derivatives showed luminescence activity with coelenterazine and the order of the initial maximum intensity of luminescence was ZZ‐gCys (100%) > Z‐gCys (36.8%) > Z‐domain (1.1%) > bovine serum albumin (BSA; 0.9%) > staphylococcal protein A (0.1%) and the background value of coelenterazine (0.1%) in our conditions. The luminescence properties of ZZ‐gCys showed the similarity to that of Gaussia luciferase, including the luminescence pattern, the emission spectrum, the stimulation by halogen ions and nonionic detergents and the substrate specificity for coelenterazine analogues. In contrast, the luminescence properties of Z‐gCys were close to the catalytic 19 kDa protein of Oplophorus luciferase. The catalytic region of the Z domain for the luminescence reaction might be different from the IgG‐binding region of the Z domain.     

Polycyclotrimerization of aromatic diynes: Synthesis,thermal stability,and light‐emitting properties of hyperbranched polyarylenes

New aromatic diyne monomers of 1,4‐diethynyl‐2,5‐(dihexyloxy)benzene ( 1 ), 1,6‐diethynyl‐2‐(hexyloxy)naphthalene ( 2 ), and 9,9‐bis(4‐ethynylphenyl)fluorene ( 3 ) are synthesized. Their homopolymerizations and copolymerizations with 1‐octyne ( 4 ) or phenylacetylene ( 5 ) are effected by TaBr₅–Ph₄Sn and CpCo(CO)₂–hν, giving soluble hyperbranched polyarylenes with high molecular weights (M_w up to ～ 2.9 × 10⁵) in high yields (up to 99%). The structures and properties of the polymers are characterized and evaluated by IR, NMR, UV, PL, and TGA analysis. The polymers show excellent thermal stability (T_d > 400 °C) and carbonize when pyrolyzed at 900 °C. Upon photoexcitation, the polymers emit deep blue light in the vicinity of ～400 nm with fluorescence quantum yields up to 92%. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 4249–4263, 2007     

Spectroelectrochemical characteristics of poly(3,4-ethylenedioxythiophene)/iron hexacyanoferrate film-modified electrodes

Spectroelectrochemical measurements of poly(3,4-ethylenedioxythiophene) (pEDOT) modified by iron hexacyanoferrate (Fehcf) network, chloride (Cl), polystyrenesulfonate (PSS), and hexacyanoferrate (FeCN) ions were shown. Depending on the electrode potential, three main maxima absorbance were recorded. The first related to, the π–π* transition in undoped state of pEDOT, the second and the third are ascribed to transitions between the valence band and the polaron and bipolaron bands, respectively. There is also identified spectrophotometric response from the ligand–metal charge transfer of hexacyanoferrates from pEDOT modified with Fehcf and FeCN. The energy band gap (E _g) was evaluated from the spectroelectrochemical curves of the undoped pEDOT films. The pEDOT/Fehcf material exhibits the band gap of 1.40 eV which is the lowest among measured E _g values equal 1.55, 1.53, and 1.58 eV for pEDOT/FeCN, pEDOT/Cl, and pEDOT/PSS, respectively. Thus, synergetic effect of polymer and Prussian blue is proved as a significant decrease of the E _g value.     

Selective Photoreceptor Gene Knock‐out Reveals a Regulatory Role for the Growth Behavior of Pseudomonas syringae

The plant pathogen Pseudomonas syringae (Ps) is a well‐established model organism for bacterial infection of plants. The genome sequences of two pathovars, pv. syringae and pv. tomato, revealed one gene encoding a blue and two genes encoding red/far red light‐sensing photoreceptors. Continuing former molecular characterization of the photoreceptor proteins, we here report selective photoreceptor gene disruption for pv. tomato aiming at identification of potentially regulatory functions of these photoreceptors. Transformation of Ps cells with linear DNA constructs yielded interposon mutations of the corresponding genes. Cell growth studies of the generated photoreceptor knock‐out mutants revealed their role in light‐dependent regulation of cell growth and motility. Disruption of the blue‐light (BL) receptor gene caused a growth deregulation, in line with an observed increased virulence of this mutant (Moriconi et al., Plant J., 2013, 76, 322). Bacterial phytochrome‐1 (BphP1) deletion mutant caused unaltered cell growth, but a stronger swarming capacity. Inactivation of its ortholog, BphP2, however, caused reduced growth and remarkably altered dendritic swarming behavior. Combined knock‐out of both bacteriophytochromes reproduced the swarming pattern observed for the BphP2 mutant alone. A triple knock‐out mutant showed a growth rate between that of the BL (deregulation) and the phytochrome‐2 mutant (growth reduction).     

Design,Synthesis, and Biological and In Silico Study of Fluorine‐Containing Quinoline Hybrid Thiosemicarbazide Analogues

A novel series of fluorine‐containing quinoline hybrid thiosemicarbazide analogues ( 8a–8l ) were synthesized and tested for their biological activities. The antibacterial results demonstrated that compounds 8d and 8l [minimal inhibitory concentration (MIC) 62.5 μg/mL] were shown to have higher biological activity than ampicillin against Escherichia coli. Compound 8b (MIC 25 μg/mL) was shown to have the highest activity than was ampicillin against Staphylococcus aureus. The antifungal results demonstrated that compound 8j (MIC 100 μg/mL) has shown good activity. Most of the targeted compounds have shown potent antimalarial activity. Compounds 8d (0.19 μg/mL), 8g (0.30 μg/mL), 8h (0.36 μg/mL), 8k (0.10 μg/mL), 8l (0.28 μg/mL), 8k (0.10 μg/mL), and 8l (0.28 μg/mL) have notable activity than does the reference drug quinine. Compounds 8d (0.27 μg/mL), 8g (0.30 μg/mL), and 8k (0.17 μg/mL) have shown excellent activity against chloroquine‐resistant strain. The MTT assay performed on peripheral blood lymphocyte cultures showed a high percentage of lymphocyte viability [ 8d (99.64), 8g (99.46), 8h (98.83), and 8k (99.51)] at a maximum dose (10 μg/mL), depicting no cytotoxicity of these compounds on human lymphocytes in vitro. A molecular docking study was performed on Pf‐DHFR‐TS inhibitor. A molecular dynamics study has shown compound 8g to have better affinity with protein. ADME‐Tox and pharmacophore study of synthesized compounds suggested prediction of active site.     

Nano‐WO3‐SO3H as a New Photocatalyst Insight Through Covalently Grafted Brønsted Acid: Highly Efficient Selective Oxidation of Benzyl Alcohols to Aldehydes

Modification of nano‐WO₃ with ?SO₃H groups as a covalently grafted solid acid reduced its band‐gap energy from 2.8 to 2.4 eV and made it an ideal nominee for photocatalytic reaction under visible light irradiation. This nano‐photocatalyst has been successfully used for the selective oxidation of different benzyl alcohols to corresponding aldehydes under blue LED irradiation. The reaction became approximately two times faster with excellent yields. It has shown that the nitrobenzene as an available industrial oxidant is applicable for photocatalytic oxidation of benzyl alcohol; remarkably high yield and selectivity have been observed.