Thioether‐Functionalized Quinone‐Based Resorcin[4]arene Cavitands: Electroswitchable Molecular Actuators

The utility of molecular actuators in nanoelectronics requires activation of mechanical motion by electric charge at the interface with conductive surfaces. We functionalized redox‐active resorcin[4]arene‐quinone cavitands with thioethers as surface‐anchoring groups at the lower rim and investigated their propensity to act as electroswitchable actuators that can adopt two different conformations in response to changes in applied potential. Molecular design was assessed by DFT calculations and X‐ray analysis. Electronic properties were experimentally studied in solution and thin films electrochemically, as well as by X‐ray photoelectron spectroscopy on gold substrates. The redox interconversion between the oxidized (quinone, Q ) and the reduced (semiquinone, SQ ) state was monitored by UV‐Vis‐NIR spectroelectrochemistry and EPR spectroscopy. Reduction to the SQ state induces a conformational change, providing the basis for potential voltage‐controlled molecular actuating devices.     

NMR Investigations into the Vase‐Kite Conformational Switching of Resorcin[4]arene Cavitands

We report the detailed investigation of temperature‐ and pH‐triggered conformational switching of resorcin[4]arene cavitands 1 – 10 (Figs. 1, 8, and 9). Depending on the experimental conditions, these macrocycles adopt a vase conformation, featuring a deep cavity for potential guest inclusion, or two kite conformations (kite 1 and kite 2) with flat, extended surfaces (Schemes 1 and 2). The thermodynamic and kinetic parameters for the interconversion between these structures were determined by variable‐temperature NMR (VT‐NMR) spectroscopy (Figs. 2–7 and 10, and Tables 1 and 2). It was discovered that vase→kite switching of cavitands is strongly solvent‐dependent: it is controlled not only by solvent polarity but also by solvent size. Conformational interconversions similar to those of the parent structure 1 with four quinoxaline flaps are also observed when the octol base skeleton is differentially or incompletely bridged. Only octanitro derivative 2 was found to exist exclusively in the kite conformation under all experimental conditions. The detailed insight into the vase?kite conformational equilibrium gained in this investigation provides the basis for the design and construction of new, dynamic resorcin[4]arene cavitands that are switchable between bistable states featuring strongly different structures and functions.     

Controlling the Size and Morphology of Supramolecular Assemblies of Viologen–Resorcin[4]arene Cavitands

A novel class of self‐assembling nanoparticles is formed with viologen–resorcin[4]arene cavitands; the association model is strongly controlled by their hydrophobicity. Interestingly, the cavitand assemblies are designed through click chemistry to form self‐assembled noncovalently connected aggregates through counterion displacement. The iodide and benzoate ions are utilized as strongly polarizable counterions to induce cavitand self‐assembly. The counterion‐mediated decrease in hydrophilicity of the viologen–resorcin[4]arenes is the underlying trigger to induce particle formation. These particles can be used as nanocontainers and find their applications in delivery systems.     

Molecular Recognition Properties of Biphen[4]arene

Biphen[n]arenes (n=3, 4) are a new family of macrocyclic hosts. Here, we describe the molecular recognition behavior of hydroxylated biphen[4]arene (OHBP4) for the first time. A series of cationic guests with different sizes and shapes, including quaternary ammonium salts ( 1? PF₆ and 2? PF₆), pyridinium‐based guests ( 3? 2 PF₆– 6? 2 PF₆), and cobaltocenium hexafluorophosphate ( 7? PF₆), were chosen as model guest molecules. OHBP4 exhibits good selectivity towards the 2,7‐dibutyldiazapyrenium bis(hexafluorophosphate) ( 4? 2 PF₆) axle to form a [2]pseudorotaxane‐type complex. In contrast, hydroxylated biphen[3]arene (OHBP3) cannot bind with this big guest. In addition, OHBP4 strongly interacts with adamantane derivative 2? PF₆ and cobaltocenium 7? PF₆, which have tridimensional shape and relatively large size. The association constant of the 7 ⁺?OHBP4 complex in 1:1 (v/v) [D₆]acetone/CD₂Cl₂ solution is up to 3100±300 m ^?1.     

Tetrathiafulvalene (TTF)‐Bridged Resorcin[4]arene Cavitands: Towards New Electrochemical Molecular Switches

We report the synthesis of novel resorcin[4]arene‐based cavitands featuring two extended bridges consisting of quinoxaline‐fused TTF (tetrathiafulvalene) moieties. In the neutral form, these cavitands were expected to adopt the vase form, whereas, upon oxidation, the open kite geometry should be preferred due to Coulombic repulsion between the two TTF radical cations (Scheme 2). The key step in the preparation of these novel molecular switches was the P(OEt)₃‐mediated coupling between a macrocyclic bis(1,3‐dithiol‐2‐thione) and 2 equiv. of a suitable 1,3‐dithiol‐2‐one. Following the successful application of this strategy to the preparation of mono‐TTF‐cavitand 3 (Scheme 3), the synthesis of the bis‐TTF derivatives 2 (Scheme 4) and 19 (Scheme 5) was pursued; however, the target compounds could not be isolated due to their insolubility. Upon decorating both the octol bowl and the TTF cavity rims with long alkyl chains, the soluble bis‐TTF cavitand 23 was finally obtained, besides a minor amount of the novel cage compound 25a featuring a highly distorted TTF bridge (Scheme 6). In contrast to 25a , the deep cavitand 23 undergoes reversible vase → kite switching upon lowering the temperature from 293 to 193 K (Fig. 1). Electrochemical studies by cyclic voltammetry (CV) and differential pulse voltammetry (DPV) provided preliminary evidence for successful vase → kite switching of 23 induced by the oxidation of the TTF cavity walls.     

Co-crystallization of Resorcin[4]arene Tetracarboxylic Acid with Triethylamine: Synthesis and Crystal Structure

Treatment of resorcin[4]arene tetracarboxylic acid 1 with triethylamine in the presence of Co(CH3COO)2·4H2O and 4,4'-bipyridine gave a co-crystallization 14-·4Et3NH+(C32H20O164-·4Et3NH+,Mr=1069.27) from ethanol and water.The compound was structurally determined by single-crystal X-ray diffraction.The crystal belongs to monoclinic,space group P21/n,with a=8.1763(18),b=12.913(3),c=28.724(7) ,β=97.574(4)o,V=3006.3(12) 3,Z=2,Dc=1.181 g/cm3,F(000)=1152,Rint=0.0275,T=293(2) K,μ=0.086 mm-1,the final R=0.0634 and wR=0.1752 for 5082 observed reflections with Ⅰ 2σ(Ⅰ).The co-crystallization is very stable at room temperature.Possibly,a network of N-H···O(=C) plays an important role in the structure.Meanwhile,the compound emits a weak cyan luminescence with peak maximum band at 458 nm.     

Hydrogen Adsorption and Diffusion in p‐tert‐Butylcalix[4]arene: An Experimental and Molecular Simulation Study

Experimental adsorption isotherms were measured and computer simulations were performed to determine the nature of the H₂ gas uptake in the low‐density p‐tert‐butylcalix[4]arene (tBC) phase. ¹H NMR peak intensity measurements for pressures up to 175 bar were used to determine the H₂ adsorption isotherm. Weak surface adsorption (up to ≈2 mass % H₂) and stronger adsorption (not exceeding 0.25 mass % or one H₂ per calixarene bowl) inside the calixarene phase were detected. The latter type of adsorbed H₂ molecule has restricted motion and shows a reversible gas adsorption/desorption cycle. Pulsed field gradient (PFG) NMR pressurization/depressurization measurements were performed to study the diffusion of H₂ in the calixarene phases. Direct adsorption isotherms by exposure of the calixarene phase to pressures of H₂ gas to ≈60 bar are also presented, and show a maximum H₂ adsorption of 0.4 H₂ per calixarene bowl. Adsorption isotherms of H₂ in bulk tBC have been simulated using grand canonical Monte Carlo calculations in a rigid tBC framework, and yield adsorptions of ≈1 H₂ per calixarene bowl at saturation. Classical molecular dynamics simulations with a fully flexible calixarene molecular force field are used to determine the guest distribution and inclusion energy of the H₂ in the solid with different loadings.     

Anion‐ and Spacer‐Directed Host–Guest Complexes of Bipyridine with Pyrogallol[4]arene

New oval‐shaped capsular and bilayer‐type hydrogen‐bonded arrangements of C‐propyl‐ol‐pyrogallol[4]arene (PgC3‐OH) with bipyridine‐type spacer complexes are reported here. These complexes are engineered by virtue of derivatization of C‐alkyl tails of pyrogallol[4]arene and the use of divergent spacer ligands. Complexes of PgC3‐OH, PgC3‐OH with bpy (4,4′‐bipyridine) and PgC3‐OH with bpa (1,2‐bis(4‐pyridyl)acetylene) have bilayer type arrangements; however, the use of hydrogen chloride causes protonation of bpy molecule, which is then entrapped flat within an offset oval‐shaped dimeric hydrogen‐bonded PgC3‐OH nanocapsule. The presence of chloride anion in the crystal lattice controls the geometry of the resultant nanoassembly.     

Acid‐Base Switchable [2]‐ and [3]Rotaxane Molecular Shuttles with Benzimidazolium and Bis(pyridinium) Recognition Sites

For the purpose of developing higher level mechanically interlocked molecules (MIMs), such as molecular switches and machines, a new rotaxane system was designed in which both the 1,2‐bis(pyridinium)ethane and benzimidazolium recognition templating motifs were combined. These two very different recognition sites were successfully incorporated into [2]rotaxane and [3]rotaxane molecular shuttles which were fully characterized by ¹H NMR, 2D EXSY, single‐crystal X‐ray diffraction and VT NMR analysis. By utilizing benzimidazolium as both a recognition site and stoppering group it was possible to create not only an acid/base switchable [2]rotaxane molecular shuttle (energy barrier 20.9 kcal?mol^?1) but also a [3]rotaxane molecular shuttle that displays unique dynamic behavior involving the simultaneous motion of two macrocyclic wheels on a single dumbbell. This study provides new insights into the design of switchable molecular shuttles. Due to the unique properties of benzimidazoles, such as fluorescence and metal coordination, this new type of molecular shuttle may find further applications in developing functional molecular machines and materials.     

Determining the Local Shear Viscosity of a Lipid Bilayer System by Reverse Non‐Equilibrium Molecular Dynamics Simulations

The parallel shear viscosity of a dipalmitoylphosphatidylcholine (DPPC) bilayer system is studied by reverse non‐equilibrium molecular dynamics simulations (RNEMD) with two different united‐atom force fields. The results are related to diffusion coefficients and structural distributions obtained by equilibrium molecular simulations. We investigate technical issues of the algorithm in the bilayer setup, namely, the dependence of the velocity profiles on the imposed flux and the influence of the thermostat on the calculated shear viscosity. We introduce the concept of local shear viscosity and investigate its dependence on the slip velocity of the monolayers and the particle density at the headgroup–water interface and the tail–tail interface. With this we demonstrate that the lipid bilayer is more viscous than the surrounding water phase, and that slip takes place near the headgroup region and in the centre of the bilayer where the alkyl tails meet. We also quantify the apparent increase in viscosity of the water molecules entangled at the water–headgroup interface.     

Simulations of p-tert-butylcalix[4]arene with multiple occupancies of small guest molecules

Classical molecular dynamics simulations were used to study low-density beta(0)-phase p-tert-butylcalix[4]arene inclusion compounds with multiple calix occupancies of xenon, carbon dioxide, methane, and hydrogen guest molecules with guest-host ratios ranging from 1:4 to 4:1. Custom parameterized force fields were used for the guests and the AMBER force field for the calixarene units was validated in our previous work (Chem. Eur. J. 2006, 12, 5231). The inclusion energy and unit cell volume of the calixarene inclusion compound were determined for various guest occupancies and for occupancies greater than 1:1, strong guest-guest interaction effects are observed. The structure and energetics of the 2:1 CO(2)/beta(0)-phase inclusion compound were compared to those of the low-temperature 2:1 CO(2)/calixarene in which the guest molecules occupy both cage and interstitial sites.     

Time‐Dependent Density Functional Theory Molecular Dynamics Simulations of Liquid Water Radiolysis

The early stages of the Coulomb explosion of a doubly ionized water molecule immersed in liquid water are investigated with time‐dependent density functional theory molecular dynamics (TD–DFT MD) simulations. Our aim is to verify that the double ionization of one target water molecule leads to the formation of atomic oxygen as a direct consequence of the Coulomb explosion of the molecule. To that end, we used TD–DFT MD simulations in which effective molecular orbitals are propagated in time. These molecular orbitals are constructed as a unitary transformation of maximally localized Wannier orbitals, and the ionization process was obtained by removing two electrons from the molecular orbitals with symmetry 1B₁, 3A₁, 1B₂ and 2A₁ in turn. We show that the doubly charged H₂O²⁺ molecule explodes into its three atomic fragments in less than 4 fs, which leads to the formation of one isolated oxygen atom whatever the ionized molecular orbital. This process is followed by the ultrafast transfer of an electron to the ionized molecule in the first femtosecond. A faster dissociation pattern can be observed when the electrons are removed from the molecular orbitals of the innermost shell. A Bader analysis of the charges carried by the molecules during the dissociation trajectories is also reported.     

Molecular dynamics simulations of p-tert-butylcalix[4]arene with small guest molecules

Classical molecular dynamics simulations were used to study p-tert-butylcalix[4]arene inclusion compounds with xenon, nitrogen, hydrogen, methane, and sulfur dioxide guest molecules. The calixarene units were taken to be rigid and the intermolecular molecular interactions were modeled as a sum of the van der Waals interactions with parameters from the AMBER force field and electrostatic interactions. Simulations of the high-density alpha phase and low-density beta0 phase of p-tert-butylcalix[4]arene were used to test the force field. The predicted densities of the two phases were found to agree with experimental measurements at 173 K to within 5 %. Simulations were performed with guests placed inside the calixarene cages of the beta0 phase. Guest-host ratios of 1:1 to 1:4 were considered. Changes in the unit-cell volume and density of the phases with the addition of guest molecules and the inclusion energies for the guests were determined. Finally, the dynamics of the guest motion inside the cages were characterized by determining the root-mean-square displacements and velocity autocorrelation functions of the xenon and nitrogen guests.     

Self‐Assembly of Calix[6]arene–Diazapyrenium Pseudorotaxanes: Interplay of Molecular Recognition and Ion‐Pairing Effects

The calix[6]arene wheel CX forms pseudorotaxane species with the diazapyrenium‐based axle 1? 2PF₆ in CH₂Cl₂ solution. The macrocyclic component is a heteroditopic receptor, which can complex the electron‐acceptor moiety of the axle inside its cavity and the counterions with the ureidic groups on the upper rim. The self‐assembled supramolecular species is a complex structure, which involves three components—the wheel, the axle and its counterions—that can mutually interact and affect. The stoichiometry of the resulting supramolecular complex depends on the nature and concentration of the counterions. Namely, it is observed that in dilute solution and with low‐coordinating anions the axle takes two wheels, whereas with highly coordinating anions or in concentrated solutions the complex has a 1:1 stoichiometry.     

Synthesis of Doubly Ethyl‐Bridged Bis(p‐sulfonatocalix[4]arene) and Its Supramolecular Polymerization with Viologen Dimer

A water‐soluble supramolecular polymer with a high degree of polymerization and viscosity has been constructed based on the strong host–guest interaction between p‐sulfonatocalix[4]arenes (SC4As) and viologen. A homoditopic doubly ethyl‐bridged bis(p‐sulfonatocalix[4]arene) (d‐SC4A) was prepared and its binding behavior towards methyl viologen compared with the singly ethyl‐bridged bis(p‐sulfonatocalix[4]arene) (s‐SC4A) by NMR spectroscopy and isothermal titration calorimetry. By employing a viologen dimer (bisMV⁴⁺) as the homoditopic guest, two linear AA/BB‐type supramolecular polymers, d‐SC4A?bisMV⁴⁺ and s‐SC4A?bisMV⁴⁺, were successfully constructed. Compared with s‐SC4A?bisMV⁴⁺, d‐SC4A?bisMV⁴⁺ shows much higher solubility and viscosity, and has also been characterized by viscosity, diffusion‐ordered NMR spectroscopy, dynamic light scattering, and atomic force microscopy measurements. Furthermore, the polymer is responsive to electrostimulus as viologen is electroactive, which was studied by cyclic voltammetry. This study represents a proof‐of‐principle as the polymer can potentially be applied as a self‐healing and degradable polymeric material.     

Redox‐Triggered Chirality Switching and Guest‐Capture/Release with a Pillar[6]arene‐Based Molecular Universal Joint

A chiral electrochemically responsive molecular universal joint (EMUJ) was synthesized by fusing a macrocyclic pillar[6]arene (P[6]) to a ferrocene‐based side ring. A single crystal of an enantiopure EMUJ was successfully obtained, which allowed, for the first time, the definitive correlation between the absolute configuration and the circular dichroism spectrum of a P[6] derivative to be determined. The self‐inclusion and self‐exclusion conformational change of the EMUJ led to a chiroptical inversion of the P[6] moiety, which could be manipulated by both solvents and changes in temperature. The EMUJ also displayed a unique redox‐triggered reversible in/out conformational switching, corresponding to an occupation/voidance switching of the P[6] cavity, respectively. This phenomenon is an unprecedented electrochemical manipulation of the capture and release of guest molecules by supramolecular hosts.     

Synthesis and Self‐Aggregation of Enantiopure and Racemic Molecular Tweezers Based on the Bicyclo[3.3.1]nonane Framework

A pair of molecular tweezers (syn‐ 4 ) that consists of quinoline and pyrazine units fused to a bicyclic framework is presented. The tweezers were synthesised both as a racemic mixture (rac‐ 4 ) and an enantiomerically pure form ((R,R,R,R)‐ 4 ) starting from either racemic or enantiomerically pure bicyclo[3.3.1]nonane‐2,6‐dione ( 3 ). Homochiral dimers were observed in the solid state for rac‐ 4 . The self‐association of both rac‐ 4 and (R,R,R,R)‐ 4 was studied in solution. A weak self‐association constant in CDCl₃ was estimated by ¹H NMR spectroscopic dilution titration experiments in both cases, following several proton resonances. For this purpose, a general normalisation model for the accurate determination of association constants from multiple datasets was developed. In contrast to the solid state, no diastereomeric discrimination was observed for rac‐ 4 in solution.