(E)‐4‐[(2‐Carbamoylhydrazinylidene)methyl]‐3‐hydroxy‐5‐hydroxymethyl‐2‐methylpyridin‐1‐ium nitrate

The title compound, C₉H₁₃N₄O₃⁺·NO₃⁻, is the first structurally characterized Schiff base derived from semicarbazide and pyridoxal. Unusually for an unsubstituted semicarbazone, the compound adopts a syn conformation, in which the carbonyl O atom is in a cis disposition relative to the azomethine N atom. This arrangement is supported by a pair of hydrogen bonds between the organic cation and the nitrate anion. The cation is essentially planar, with only a hydroxymethyl O atom deviating significantly from the mean plane of the remaining atoms (r.m.s. deviation of the remaining non‐H atoms = 0.01 Å). The molecules are linked into flat layers by N—H...O and C—H...O hydrogen bonds. O—H...O hydrogen bonds involving the hydroxymethyl group as a donor interconnect the layers into a three‐dimensional structure.     

Exo conformers of N‐(pyridin‐2‐yl)‐ and N‐(pyridin‐3‐yl)norbornene‐5,6‐dicarboximide crystals

Two isomeric pyridine‐substituted norbornenedicarboximide derivatives, namely N‐(pyridin‐2‐yl)‐exo‐norbornene‐5,6‐dicarboximide, (I), and N‐(pyridin‐3‐yl)‐exo‐norbornene‐5,6‐dicarboximide, (II), both C₁₄H₁₂N₂O₄, have been crystallized and their structures unequivocally determined by single‐crystal X‐ray diffraction. The molecules consist of norbornene moieties fused to a dicarboximide ring substituted at the N atom by either pyridin‐2‐yl or pyridin‐3‐yl in an anti configuration with respect to the double bond, thus affording exo isomers. In both compounds, the asymmetric unit consists of two independent molecules (Z′ = 2). In compound (I), the pyridine rings of the two independent molecules adopt different conformations, i.e. syn and anti, with respect to the methylene bridge. The intermolecular contacts of (I) are dominated by C—H...O interactions. In contrast, in compound (II), the pyridine rings of both molecules have an anti conformation and the two independent molecules are linked by carbonyl–carbonyl interactions, as well as by C—H...O and C—H...N contacts.     

Synthesis and crystal structures of the potential tyrosinase inhibitors N‐(4‐acetylphenyl)‐2‐chloroacetamide and 2‐(4‐acetylanilino)‐2‐oxoethyl cinnamate

Substituted benzoic acid and cinnamic acid esters are of interest as tyrosinase inhibitors and the development of such inhibitors may help in diminishing many dermatological disorders. The tyrosinase enzyme has also been linked to Parkinson's disease. In view of hydroxylated compounds having ester and amide functionalities to potentially inhibit tyrosinase, we herein report the synthesis and crystal structures of two amide‐based derivatives, namely N‐(4‐acetylphenyl)‐2‐chloroacetamide, C₁₀H₁₀ClNO₂, (I), and 2‐(4‐acetylanilino)‐2‐oxoethyl cinnamate, C₁₉H₁₇NO₄, (II). In compound (I), the acetylphenyl ring and the N—(C=O)—C unit of the acetamide group are almost coplanar, with a dihedral angle of 7.39 (18)°. Instead of esterification, a cheaper and more efficient synthetic method has been developed for the preparation of compound (II). The molecular geometry of compound (II) is a V‐shape. The acetamide and cinnamate groups are almost planar, with mean deviations of 0.088 and 0.046 Å, respectively; the dihedral angle between these groups is 77.39 (7)°. The carbonyl O atoms are positioned syn and anti to the amide carbonyl O atom. In the crystals of (I) and (II), N—H…O, C—H…O and C—H…π interactions link the molecules into a three‐dimensional network.     

Three sterically hindered 6‐amino‐5‐cyano‐2‐methyl‐4‐(1‐naphthyl)‐4H‐pyran‐3‐carboxylate derivatives

In the title compounds, 2‐methoxyethyl 6‐amino‐5‐cyano‐2‐methyl‐4‐(1‐naphthyl)‐4H‐pyran‐3‐carboxylate, C₂₁H₂₀N₂O₄, (II), isopropyl 6‐amino‐5‐cyano‐2‐methyl‐4‐(1‐naphthyl)‐4H‐pyran‐3‐carboxylate, C₂₁H₂₀N₂O₃, (III), and ethyl 6‐amino‐5‐cyano‐2‐methyl‐4‐(1‐naphthyl)‐4H‐pyran‐3‐carboxylate, C₂₀H₁₈N₂O₃, (IV), the heterocyclic pyran ring adopts a flattened boat conformation. In (II) and (III), the carbonyl group and a double bond of the heterocyclic ring are mutually anti, but in (IV) they are mutually syn. The ester O atoms in (II) and (III) and the carbonyl O atom in (IV) participate in intramolecular C—H...O contacts to form six‐membered rings. The dihedral angles between the naphthalene substituent and the closest four atoms of the heterocyclic ring are 73.3 (1), 71.0 (1) and 74.3 (1)° for (II)–(IV), respectively. In all three structures, only one H atom of the NH₂ group takes part in N—H...O [in (II) and (III)] or N—H...N [in (IV)] intermolecular hydrogen bonds, and chains [in (II) and (III)] or dimers [in (IV)] are formed. In (II), weak intermolecular C—H...O and C—H...N hydrogen bonds, and in (III) intermolecular C—H...O hydrogen bonds link the chains into ladders along the a axis.     

3‐(Triphenyl­phospho­ranyl­idene)pentane‐2,4‐dione and dieth­yl 2‐(triphenyl­phospho­ranyl­idene)malonate

The title ylides, 3‐(triphenyl­phospho­ranyl­idene)pentane‐2,4‐dione, C₂₃H₂₁O₂P, (I), and diethyl 2‐(triphenyl­phospho­ranyl­idene)malonate, C₂₅H₂₅O₄P, (II), differ in the conformations adopted by their extended ylide moieties. In (I), one carbonyl O atom is syn and the other is anti with respect to the P atom, the ylide group is nearly planar, with a maximum P—C—(C=O) angle of 18.2 (2)°, and the P—C, C—C and C=O bond lengths are consistent with electronic delocalization involving the O atoms. In (II), both carbonyl O atoms are anti and the ester groups are twisted out of the plane of the near trigonal ylide C atom, reducing delocalization, the largest P—C—(C=O) angle being 30.2 (2)°.     

Conformational polymorphism of (E,E)‐N,N′‐bis(4‐nitrobenzylidene)benzene‐1,4‐diamine

Two polymorphs of (E,E)‐N,N′‐bis(4‐nitrobenzylidene)benzene‐1,4‐diamine, C₂₀H₁₄N₄O₄, (I), have been identified. In each case, the molecule lies across a crystallographic inversion centre. The supramolecular structure of the first polymorph, (I‐1), features stacking based on π–π interactions assisted by weak hydrogen bonds involving the nitro groups. The second polymorph, (I‐2), displays a perpendicular arrangement of molecules linked via the nitro groups, combined with weak C—H...O hydrogen bonds. Both crystal structures are compared with that of the carbon analogue (E,E)‐1,4‐bis[2‐(4‐nitrophenyl)ethenyl]benzene, (II).     

A comparative study of two polymorphs of bis(1‐hydroxy‐2‐methylpropan‐2‐aminium) carbonate

Alkanolamines have been known for their high CO₂ absorption for over 60 years and are used widely in the natural gas industry for reversible CO₂ capture. In an attempt to crystallize a salt of (RS)‐2‐(3‐benzoylphenyl)propionic acid with 2‐amino‐2‐methylpropan‐1‐ol, we obtained instead a polymorph (denoted polymorph II) of bis(1‐hydroxy‐2‐methylpropan‐2‐aminium) carbonate, 2C₄H₁₂NO⁺·CO₃²⁻, (I), suggesting that the amine group of the former compound captured CO₂ from the atmosphere forming the aminium carbonate salt. This new polymorph was characterized by single‐crystal X‐ray diffraction analysis at low temperature (100 K). The salt crystallizes in the monoclinic system (space group C2/c, Z = 4), while a previously reported form of the same salt (denoted polymorph I) crystallizes in the triclinic system (space group P, Z = 2) [Barzagli et al. (2012). ChemSusChem, 5 , 1724–1731]. The asymmetric unit of polymorph II contains one 1‐hydroxy‐2‐methylpropan‐2‐aminium cation and half a carbonate anion, located on a twofold axis, while the asymmetric unit of polymorph I contains two cations and one anion. These polymorphs exhibit similar structural features in their three‐dimensional packing. Indeed, similar layers of an alternating cation–anion–cation neutral structure are observed in their molecular arrangements. Within each layer, carbonate anions and 1‐hydroxy‐2‐methylpropan‐2‐aminium cations form planes bound to each other through N—H…O and O—H…O hydrogen bonds. In both polymorphs, the layers are linked to each other via van der Waals interactions and C—H…O contacts. In polymorph II, a highly directional C—H…O contact (C—H…O = 156°) shows as a hydrogen‐bonding interaction. Periodic theoretical density functional theory (DFT) calculations indicate that both polymorphs present very similar stabilities.     

Polymorphism in bipodal O,O′‐dimeth­yl N,N′‐(m‐phenyl­ene­di­carbonyl)bis(thio­carbamate)

The title compound, C₁₂H₁₂N₂O₄S₂, crystallizes in white and yellow polymeric forms as a result of inter­esting anti–anti and syn–anti conformational isomerism of the thio­carbon­yl and carbon­yl moieties relative to one another. This work is the first reported X‐ray crystallographic structure determination of isomers of this class of bipodal ligand. The white form, anti–anti, (I), crystallizes with the benzene ring lying about a twofold rotation axis, resulting in both of the thio­carbon­yl and carbon­yl moieties being anti relative to each other. The yellow modification crystallizes as syn–anti, (II), with one thio­carbon­yl moiety syn and the other anti relative to the respective carbon­yl groups. The individual mol­ecules of both (I) and (II) are extensively linked through inter­molecular hydrogen bonds. Inter­molecular hydrogen bonding in (II) includes a network of bifurcated N—H⋯O and N—H⋯S hydrogen bonds, while mol­ecules of (I) include bifurcated C—H⋯O hydrogen bonds.     

N‐(4‐Bi­phenyl­yl)­urea

In the crystal structure of the title compound, C₁₃H₁₂N₂O, N—H(anti)?O hydrogen bonds produce the so‐called urea α‐network and the N—H(syn) donor forms an unconventional N—H?π hydrogen bond.     

Two polymorphs of 2‐(4‐chlorophenyl)‐4‐methylchromenium perchlorate

Crystallization (from ethyl acetate solution) of 2‐(4‐chlorophenyl)‐4‐methylchromenium perchlorate, C₁₆H₁₂ClO⁺·;ClO₄⁻, (I), yields two monoclinic polymorphs with the space groups P2₁/n [polymorph (Ia)] and P2₁/c [polymorph (Ib)]; in both cases, Z = 4. Cations and anions, disordered in polymorph (Ib), form ion pairs in both polymorphs as a result of Cl—O...π interactions. Related by a centre of symmetry, neighbouring ion pairs in polymorph (Ia) are linked viaπ–π interactions between cationic fragments, and the resulting dimers are linked through a network of C—H...O(perchlorate) interactions between adjacent cations and anions. The ion pairs in polymorph (Ib), arranged in pairs of columns along the a axis, are linked through a network of C—H...O(perchlorate), C—Cl...π, π–π and C—Cl...O(perchlorate) interactions. The aromatic skeletons in polymorph (Ia) are parallel in the cationic fragments involved in dimers, but nonparallel in adjacent ion pairs not constituting dimers. In polymorph (Ib), these skeletons are parallel in pairs of columns, but nonparallel in adjacent pairs of columns; this is visible as a herring‐bone pattern. Differences in the crystal structures of the polymorphs are most probably the cause of their different colours.     

4‐Amino‐7‐(2‐de­oxy‐2‐fluoro‐β‐d‐arabinofuranos­yl)‐5‐fluoro‐7H‐pyrrolo[2,3‐d]pyrimidine: a bis‐fluorinated analogue of 2′‐deoxy­tubercidin

The title compound, C₁₁H₁₂F₂N₄O₃, exhibits an anti glycosylic bond conformation, with a torsion angle χ = −117.8 (2)°. The sugar pucker is N‐type (C4′‐exo, between ³T₄ and E₄, with P = 45.3° and τ_m = 41.3°). The conformation around the exocyclic C—C bond is −ap (trans), with a torsion angle γ = −177.46 (15)°. The nucleobases are stacked head‐to‐head. The crystal structure is characterized by a three‐dimensional hydrogen‐bond network involving N—H⋯O, O—H⋯O and O—H⋯N hydrogen bonds.     

4‐(4‐Chloro­phen­yl)‐3‐(4‐phenyl­pent‐4‐en­yloxy)‐1,3‐thia­zole‐2(3H)‐thione

The title compound, C₂₀H₁₈ClNOS₂, is a thia­zole‐derived thio­hydroxamic acid O‐ester. The value of Z′ is 3 and the asymmetric unit comprises three mol­ecules of identical helicity along the N—O bond. Two of these show an anti and the third a syn arrangement of substituents attached in positions 3 and 4 to the 1,3‐thia­zole nucleus.     

2,2′‐Methyl­enebis(3‐hydroxy‐2‐cyclo­hexen‐1‐one)

In the title compound, C₁₃H₁₆O₄, the cyclo­hexene rings adopt a sofa conformation. Adjacent mol­ecules are connected by C—H?O intermolecular interactions. Each mol­ecule is characterized by O—H?O intramolecular hydrogen bonds. The anti arrangement of the enolic OH group and the carbonyl O atom in the solid state is similar to the anti arrangement of the NH and carbonyl groups in indigo.     

Two polymorphs of N‐(2‐methoxyphenyl)‐4‐oxo‐4H‐chromone‐3‐carboxamide

The title compound, C₁₇H₁₃NO₄, crystallizes in two polymorphic forms, each with two molecules in the asymmetric unit and in the monoclinic space group P2₁/c. All of the molecules have intramolecular hydrogen bonds involving the amide group. The amide N atoms act as donors to the carbonyl group of the pyrone and also to the methoxy group of the benzene ring. The carbonyl O atom of the amide group acts as an acceptor of the β and β′ C atoms belonging to the aromatic rings. These intramolecular hydrogen bonds have a profound effect on the molecular conformation. In one polymorph, the molecules in the asymmetric unit are linked to form dimers by weak C—H...O interactions. In the other, the molecules in the asymmetric unit are linked by a single weak C—H...O hydrogen bond. Two of these units are linked to form centrosymmetric tetramers by a second weak C—H...O interaction. Further interactions of this type link the molecules into chains, so forming a three‐dimensional network. These interactions in both polymorphs are supplemented by π–π interactions between the chromone rings and between the chromone and methoxyphenyl rings.     

A triangular palladium(II) supramolecular coordination complex based on 1,4‐bis(1H‐imidazol‐1‐yl)benzene and (2,2′‐bipyridyl)palladium(II) nitrate: synthesis and crystal structure

The self‐assembly of ditopic bis(1H‐imidazol‐1‐yl)benzene ligands ( L ^H) and the complex (2,2′‐bipyridyl‐κ²N,N′)bis(nitrato‐κO)palladium(II) affords the supramolecular coordination complex tris[μ‐bis(1H‐imidazol‐1‐yl)benzene‐κ²N³:N^3′]‐triangulo‐tris[(2,2′‐bipyridyl‐κ²N,N′)palladium(II)] hexakis(hexafluoridophosphate) acetonitrile heptasolvate, [Pd₃(C₁₀H₈N₂)₃(C₁₂H₁₀N₄)₃](PF₆)₆·7CH₃CN, 2 . The structure of 2 was characterized in acetonitrile‐d₃ by ¹H/¹³C NMR spectroscopy and a DOSY experiment. The trimeric nature of supramolecular coordination complex 2 in solution was ascertained by cold spray ionization mass spectrometry (CSI–MS) and confirmed in the solid state by X‐ray structure analysis. The asymmetric unit of 2 comprises the trimetallic Pd complex, six PF₆^? counter‐ions and seven acetonitrile solvent molecules. Moreover, there is one cavity within the unit cell which could contain diethyl ether solvent molecules, as suggested by the crystallization process. The packing is stabilized by weak inter‐ and intramolecular C—H…N and C—H…F interactions. Interestingly, the crystal structure displays two distinct conformations for the L ^H ligand (i.e. syn and anti), with an all‐syn‐[Pd] coordination mode. This result is in contrast to the solution behaviour, where multiple structures with syn/anti‐ L ^H and syn/anti‐[Pd] are a priori possible and expected to be in rapid equilibrium.     

Hexakis(prop‐2‐enamide)copper(II) bis(perchlorate) and hexakis(prop‐2‐enamide)manganese(II) bis(perchlorate)

The structures of [Cu(AA)₆](ClO₄)₂, (I), and [Mn(AA)₆](ClO₄)₂, (II) (AA is acrylamide, also known as prop‐2‐enamide; C₃H₅NO), display both intra‐ and intermolecular N—H...O hydrogen bonding. A three‐dimensional network is propagated via the perchlorate counter‐ions. There are two crystallographically independent molecules in the copper complex, with the most significant difference between them being the conformation of one symmetry‐related pair of AA ligands which are in the unusual syn conformation. The copper complex exhibits syn/anti disorder of the =CH₂ group in one pair of symmetry‐related AA ligands. The Cu^II and Mn^II centres are both situated on centres of inversion. The copper complex cation has octahedral coordination geometry with typical Jahn–Teller distortions.     

catena‐Poly[[copper(II)‐μ‐2‐[bis­(2‐pyridylmeth­yl)amino]butyrato‐κ4N,N′,N′′,O:κO′] perchlorate]

The copper(II) ion in the syn–anti carboxyl­ate‐bridged one‐dimensional zigzag chain title complex, {[Cu(C₁₆H₁₈N₃O₂)]ClO₄}_n, exhibits a distorted trigonal–bipyramidal environment. Two N atoms and one carboxyl­ate O atom of the ligand form the basal plane, while the axial positions are filled by an N atom of the ligand and one O atom belonging to the carboxyl­ate group of an adjacent mol­ecule. The crystal packing is enhanced by C—H⋯O(perchlorate) hydrogen bonds.     

8‐Aza‐7‐deaza‐2′‐de­oxy‐2‐(methyl­sulfan­yl)adenosine

In the title compound, 4‐amino‐1‐(2‐de­oxy‐β‐d ‐erythro‐pentofuranos­yl)‐6‐methyl­sulfanyl‐1H‐pyrazolo[3,4‐d]pyrimidine, C₁₁H₁₆N₅O₃S, the conformation of the glycosidic bond is between anti and high anti. The 2′‐deoxy­ribofuranosyl moiety adopts the C3′‐exo–C4′‐endo conformation (₃T⁴, S‐type sugar pucker), and the conformation at the exocyclic C—C bond is +sc (+gauche). The exocyclic 6‐amine group and the 2‐methyl­sulfanyl group lie on different sides of the heterocyclic ring system. The mol­ecules form a three‐dimensional hydrogen‐bonded network that is stabilized by O—H⋯N, N—H⋯O and C—H⋯O hydrogen bonds.     

2′‐Deoxy‐5‐propynyluridine: a nucleoside with two conformations in the asymmetric unit

The title compound, 1‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐5‐(prop‐1‐ynyl)pyrimidin‐2,4(1H,3H)‐dione, C₁₂H₁₄N₂O₅, shows two conformations in the crystalline state: conformer 1 adopts a C2′‐endo (close to ²E; S‐type) sugar pucker and an anti nucleobase orientation [χ = −134.04 (19)°], while conformer 2 shows an S sugar pucker (twisted C2′‐endo–C3′‐exo), which is accompanied by a different anti base orientation [χ = −162.79 (17)°]. Both molecules show a +sc (gauche, gauche) conformation at the exocyclic C4′—C5′ bond and a coplanar orientation of the propynyl group with respect to the pyrimidine ring. The extended structure is a three‐dimensional hydrogen‐bond network involving intermolecular N—H...O and O—H...O hydrogen bonds. Only O atoms function as H‐atom acceptor sites.     

Carbonyl–carbonyl interactions and amide π‐stacking as the directing motifs of the supramolecular assembly of ethyl N‐(2‐acetylphenyl)oxalamate in a synperiplanar conformation

The title compound, C₁₂H₁₃NO₄, is one of the few examples that exhibits a syn conformation between the amide and ester carbonyl groups of the oxalyl group. This conformation allows the engagement of the amide H atom in an intramolecular three‐centred hydrogen‐bonding S(6)S(5) motif. The compound is self‐assembled by C=O...C=O and amide–π interactions into stacked columns along the b‐axis direction. The concurrence of both interactions seems to be responsible for stabilizing the observed syn conformation between the carbonyl groups. The second dimension, along the a‐axis direction, is developed by soft C—H...O hydrogen bonding. Density functional theory (DFT) calculations at the B3LYP/6‐31G(d,p) level of theory were performed to support the experimental findings.