Synthesis of cyanine dyes derived from benzotellurazo‐15‐crown‐5

A series of crown ether cyanine dyes including crown ether styryl cyanine dyes, crown ether merocyanine dyes and crown ether squarylium cyanine dyes (unsymmetric and symmetric) derived from key intermediate 2‐methyl‐5,6(15‐crown‐5)benzotellurazole ( 1 ) were prepared.     

Synthesis and application of 2‐styryl‐6,7‐dichlorothiazolo[4,5‐b]‐quinoxaline based fluorescent dyes: Part 3

A new efficient synthesis of 2‐styryl‐6,7‐dichlorothiazolo[4,5‐b]quinoxaline based fluorescent dyes was achieved by the condensation of 2‐methyl‐6,7‐dichlorothiazolo[4,5‐b]quinoxaline with selected 4‐N,N‐dialkylaminoarylaldehydes and heteroarylaldehydes in the presence of piperidine. The coloristic, fluo‐rophoric, and dyeing properties of these dyes were studied.     

New 2,6‐Distyryl‐Substituted BODIPY Isomers: Synthesis,Photophysical Properties,and Theoretical Calculations

A 2,6‐distyryl‐substituted boradiazaindacene (BODIPY) dye and a new series of 2,6‐p‐dimethylaminostyrene isomers containing both α‐ and β‐position styryl substituents were synthesized by reacting styrene and p‐dimethylaminostyrene with an electron‐rich diiodo‐BODIPY. The dyes were characterized by X‐ray crystallography and NMR spectroscopy and their photophysical properties were investigated and analyzed by carrying out a series of theoretical calculations. The absorption spectra contain markedly redshifted absorbance bands due to conjugation between the styryl moieties and the main BODIPY fluorophore. Very low fluorescence quantum yields and significant Stokes shifts are observed for 2,6‐distyryl‐substituted BODIPYs, relative to analogous 3,5‐distyryl‐ and 1,7‐distyryl‐substituted BODIPYs. Although the fluorescence of the compound with β‐position styryl substituents on both pyrrole moieties and one with both β‐ and α‐position substituents was completely quenched, the compound with only α‐position substituents exhibits weak emission in polar solvents, but moderately intense emission with a quantum yield of 0.49 in hexane. Protonation studies have demonstrated that these 2,6‐p‐dimethylaminostyrene isomers can be used as sensors for changes in pH. Theoretical calculations provide strong evidence that styryl rotation and the formation of non‐emissive charge‐separated S₁ states play a pivotal role in shaping the fluorescence properties of these dyes. Molecular orbital theory is used as a conceptual framework to describe the electronic structures of the BODIPY core and an analysis of the angular nodal patterns provides a reasonable explanation for why the introduction of substituents at different positions on the BODIPY core has markedly differing effects.     

Synthesis and Electroluminescence of Metal 4‐Styryl‐8‐hydroxyquinolates

Aluminum and zinc complexes of 4‐substituted 8‐hydroxyquinoline were used effectively as emissive materials in light‐emitting diodes (LED). The substituents chosen in this study were p‐methoxy‐2‐styryl, p‐diethylamino‐2‐styryl, and naphthalene‐2‐vinyl groups. Their emission spectra were red‐shifted with respect to that of aluminum tris(hydroxylquinolate) (Alq₃) as a result of extending their π‐conjugation. All complexes formed amorphous glasses, which exhibited high thermal and electrical stability. Typical LED devices were fabricated by mixing the dyes with polyvinylcarbazole and spin‐coated to form thin films, which were sandwiched between ITO (indium tin oxide) and a metal electrode. These devices displayed yellow‐orange emissions with quantum efficiency ca. 0.4%.     

Asymmetric Distyrylpyridinium Dyes as Red‐Emitting Fluorescent Probes for Quadruplex DNA

The interactions of three cationic distyryl dyes, namely 2,4‐bis(4‐dimethylaminostyryl)‐1‐methylpyridinium ( 1 a ), its derivative with a quaternary aminoalkyl chain ( 1 b ), and the symmetric 2,6‐bis(4‐dimethylaminostyryl)‐1‐methylpyridinium ( 2 a ), with several quadruplex and duplex nucleic acids were studied with the aim to establish the influence of the geometry of the dyes on their DNA‐binding and DNA‐probing properties. The results from spectrofluorimetric titrations and thermal denaturation experiments provide evidence that asymmetric (2,4‐disubstituted) dyes 1 a and 1 b bind to quadruplex DNA structures with a near‐micromolar affinity and a fair selectivity with respect to double‐stranded (ds) DNA [K_a(G4)/K_a(ds)=2.5–8.4]. At the same time, the fluorescence of both dyes is selectively increased in the presence of quadruplex DNAs (more than 80–100‐fold in the case of human telomeric quadruplex), even in the presence of an excess of competing double‐stranded DNA. This optical selectivity allows these dyes to be used as quadruplex‐DNA‐selective probes in solution and stains in polyacrylamide gels. In contrast, the symmetric analogue 2 a displays a strong binding preference for double‐stranded DNA [K_a(ds)/K_a(G4)=40–100), presumably due to binding in the minor groove. In addition, 2 a is not able to discriminate between quadruplex and duplex DNA, as its fluorescence is increased equally well (20–50‐fold) in the presence of both structures. This study emphasizes and rationalizes the strong impact of subtle structural variations on both DNA‐recognition properties and fluorimetric response of organic dyes.     

Charge‐Recombination Fluorescence from Push–Pull Electronic Systems Constructed around Amino‐Substituted Styryl–BODIPY Dyes

A small series of donor–acceptor molecular dyads has been synthesized and fully characterized. In each case, the acceptor is a dicyanovinyl unit and the donor is a boron dipyrromethene (BODIPY) dye equipped with a single styryl arm bearing a terminal amino group. In the absence of the acceptor, the BODIPY‐based dyes are strongly fluorescent in the far‐red region and the relaxed excited‐singlet states possess significant charge‐transfer character. As such, the emission maxima depend on both the solvent polarity and temperature. With the corresponding push–pull molecules, there is a low‐energy charge‐transfer state that can be observed by both absorption and emission spectroscopy. Here, charge‐recombination fluorescence is weak and decays over a few hundred picoseconds or so to recover the ground state. Overall, these results permit evaluation of the factors affecting the probability of charge‐recombination fluorescence in push–pull dyes. The photophysical studies are supported by cyclic voltammetry and DFT calculations.     

meso‐Ester and Carboxylic Acid Substituted BODIPYs with Far‐Red and Near‐Infrared Emission for Bioimaging Applications

A series of meso‐ester‐substituted BODIPY derivatives 1–6 are synthesized and characterized. In particular, dyes functionalized with oligo(ethylene glycol) ether styryl or naphthalene vinylene groups at the α positions of the BODIPY core ( 3 – 6 ) become partially soluble in water, and their absorptions and emissions are located in the far‐red or near‐infrared region. Three synthetic approaches are attempted to access the meso‐carboxylic acid (COOH)‐substituted BODIPYs 7 and 8 from the meso‐ester‐substituted BODIPYs. Two feasible synthetic routes are developed successfully, including one short route with only three steps. The meso‐COOH‐substituted BODIPY 7 is completely soluble in pure water, and its fluorescence maximum reaches around 650 nm with a fluorescence quantum yield of up to 15 %. Time‐dependent density functional theory calculations are conducted to understand the structure–optical properties relationship, and it is revealed that the Stokes shift is dependent mainly on the geometric change from the ground state to the first excited singlet state. Furthermore, cell staining tests demonstrate that the meso‐ester‐substituted BODIPYs ( 1 and 3 – 6 ) and one of the meso‐COOH‐substituted BODIPYs ( 8 ) are very membrane‐permeable. These features make these meso‐ester‐ and meso‐COOH‐substituted BODIPY dyes attractive for bioimaging and biolabeling applications in living cells.     

Ultrafast Photoinduced Charge Separation in Wide‐Band‐Capturing Self‐Assembled Supramolecular Bis(donor styryl)BODIPY–Fullerene Conjugates

A new series of self‐assembled supramolecular donor–acceptor conjugates capable of wide‐band capture, and exhibiting photoinduced charge separation have been designed, synthesized and characterized using various techniques as artificial photosynthetic mimics. The donor host systems comprise of a 4,4‐difluoro‐4‐bora‐3a,4a‐diaza‐s‐indacene (BODIPY) containing a crown ether entity at the meso‐position and two styryl entities on the pyrrole rings. The styryl end groups also carried additional donor (triphenylamine or phenothiazine) entities. The acceptor host system was a fulleropyrrolidine comprised of an ethylammonium cation. Owing to the presence of extended conjugation and multiple chromophore entities, the BODIPY host revealed absorbance and emission well into the near‐IR region covering the 300–850 nm spectral range. The donor–acceptor conjugates formed by crown ether–alkyl ammonium cation binding of the host–guest system was characterized by optical absorbance and emission, computational, and electrochemical techniques. Experimentally determined binding constants were in the range of 1–2×10⁵ M ^?1. An energy‐level diagram to visualize different photochemical events was established using redox, computational, absorbance, and emission data. Spectral evidence for the occurrence of photoinduced charge separation in these conjugates was established from femtosecond transient absorption studies. The measured rates indicated ultrafast charge separation and relatively slow charge recombination revealing their usefulness in light‐energy harvesting and optoelectronic device applications. The bis(donor styryl)BODIPY‐derived conjugates populated their triplet excited states during charge recombination.     

Key Structural Elements of Unsymmetrical Cyanine Dyes for Highly Sensitive Fluorescence Turn‐On DNA Probes

Unsymmetrical cyanine dyes, such as thiazole orange, are useful for the detection of nucleic acids with fluorescence because they dramatically enhance the fluorescence upon binding to nucleic acids. Herein, we synthesized a series of unsymmetrical cyanine dyes and evaluated their fluorescence properties. A systematic structure–property relationship study has revealed that the dialkylamino group at the 2‐position of quinoline in a series of unsymmetrical cyanine dyes plays a critical role in the fluorescence enhancement. Four newly designed unsymmetrical cyanine dyes showed negligible intrinsic fluorescence in the free state and strong fluorescence upon binding to double‐stranded DNA (dsDNA) with a quantum yield of 0.53 to 0.90, which is 2 to 3 times higher than previous unsymmetrical cyanine dyes. A detailed analysis of the fluorescence lifetime revealed that the dialkylamino group at the 2‐position of quinoline suppressed nonradiative decay in favor of increased fluorescence quantum yield. Moreover, these newly developed dyes were able to stain the nucleus specifically in fixed HeLa cells examined by using a confocal laser‐scanning microscope.     

Synthesis,Photophysical Properties,and Antimicrobial Activity of Novel Styryl Colorants Derived from 7‐Methoxy‐1,4‐diphenethyl‐1,2,3,4‐tetrahydroquinoxaline‐6‐carbaldehyde

The novel 1,4‐diphenethyl‐1,2,3,4‐tetrahydro‐7‐methoxyquinoxalin‐6‐carbaldehyde was synthesized by reductive alkylation of 6‐methoxy quinoxaline with phenyl acetic acid and was further subjected to Knoevenagel condensation with various active methylene compounds to synthesize novel styryl colorants. Photophysical properties of styryl colorants were studied using UV–visible and fluorescence spectroscopy. These colorants displayed orange to violet hue and showed fluorescence emission maxima in the region of 560–640 nm, and displayed a large Stokes shift (85–104 nm). Compounds were subjected to thermogravimetric analysis which showed excellent stability up to 310°C. These styryl compounds were evaluated for their antimicrobial study as antifungal against Candida albicans C. albicans and Aspergillus niger and antibacterial against Escherichia coli and Staphylococcus aureus. The results revealed good antimicrobial activity against tested organisms. The synthesized chromophores were characterized using elemental analysis, FTIR, ¹³C‐NMR and ¹H‐NMR spectroscopy and mass spectrometry.     

Synthesis of 3‐(2‐benzyloxy‐6‐hydroxyphenyl)‐1‐methylpyrazoles by the reaction of chromones with methylhydrazine

The 3‐(2‐benzyloxy‐6‐hydroxyphenyl)‐5‐(methyl, phenyl or styryl)pyrazoles were prepared from the reaction of 2‐(methyl, phenyl or styryl)chromones with methylhydrazine. The structure of these compounds has been determined by several nmr techniques, and the reaction mechanism is discussed.     

“Two‐Point” Self‐Assembly and Photoinduced Electron Transfer in meso‐Donor‐Carrying Bis(styryl crown ether)‐BODIPY–Bis(alkylammonium)fullerene Donor–Acceptor Conjugates

BF₂‐chelated dipyrromethene, BODIPY, was functionalized to carry two styryl crown ether tails and a secondary electron donor at the meso position. By using a “two‐point” self‐assembly strategy, a bis‐alkylammonium‐functionalized fullerene (C₆₀) was allowed to self‐assemble the crown ether voids of BODIPY to obtain multimodular donor–acceptor conjugates. As a consequence of the two‐point binding, the 1:1 stoichiometric complexes formed yielded complexes of higher stability in which fluorescence of BODIPY was found to be quenched; this suggested the occurrence of excited‐state processes. The geometry and electronic structure of the self‐assembled complexes were derived from B3LYP/3‐21G(*) methods in which no steric constraints between the entities was observed. An energy‐level diagram was established by using spectral, electrochemical, and computational results to help understand the mechanistic details of excited‐state processes originating from ¹bis‐styryl‐BODIPY*. Femtosecond transient absorbance studies were indicative of the formation of an exciplex state prior to the charge‐separation process to yield a bis‐styryl‐BODIPY ^{. +}–C₆₀ ^{. −} radical ion pair. The time constants for charge separation were generally lower than charge‐recombination processes. The present studies bring out the importance of multimode binding strategies to obtain stable self‐assembled donor–acceptor conjugates capable of undergoing photoinduced charge separation needed in artificial photosynthetic applications.     

Synthesis and Visible Spectral Behaviour of Some New N‐Bridgehead Heterocyclic Cyanine Dyes Incorporating Pyrazolo (4,5‐b) Indolizine (Benzoindolizine)

The new unsymmetrical N‐bridgehead, apo (zeromethine), mono‐methine, dimethine, meso substituted tetramethine and styryl cyanine dyes incorporating pyrazolo (4,5‐b) indolizine (benzoindolizine) nuclei were prepared. Structural confirmation was carried out by elemental analyses, IR, H‐NMR, mass spectra and ¹³C‐NMR with the aid of carbon DEPT spectral data. The visible absorption spectra for the newly synthesized cyanines were examined in 95% ethanol.     

A Light‐up Logic Platform for Selective Recognition of Parallel G‐Quadruplex Structures via Disaggregation‐Induced Emission

The design of turn‐on dyes with optical signals sensitive to the formation of supramolecular structures provides fascinating and underexplored opportunities for G‐quadruplex (G4) DNA detection and characterization. Here, we show a new switching mechanism that relies on the recognition‐driven disaggregation (on‐signal) of an ultrabright coumarin‐quinazoline conjugate. The synthesized probe selectively lights‐up parallel G4 DNA structures via the disassembly of its supramolecular state, demonstrating outputs that are easily integrable into a label‐free molecular logic system. Finally, our molecule preferentially stains the G4‐rich nucleoli of cancer cells.     

NLOphoric Triphenylamine Derived Donor‐π‐Acceptor‐π‐Donor Based Colorants: Synthesis,Spectroscopic, Density Functional Theory and Z‐scan Studies

Three Donor‐π‐Acceptor‐π‐Donor type styryl dyes ( 5a‐c ) with different secondary donors are synthesized and characterized to study their nonlinear and linear optical properties. The structure–property relationships of the dyes are described in the light of systematic photophysical and theoretical investigations. The photophysical characteristics of 5a‐c are influenced by the polarity of the medium, with an appreciable bathochromic shift in emission ( 5b = 81 nm) and large Stoke shifts ( 5b = 104–173 nm) in polar solvents. 5a‐c showed intramolecular charge transfer characteristics recognized with the help of emission solvatochromism, solvent polarity graphs, natural bond orbital analysis and HOMO–LUMO energy difference. The optimized geometry and frontier molecular orbitals reveal that the electron donation takes place from secondary donors and not from a fixed donor (triphenylamine) which is more twisted. The nonlinear optical properties obtained using solvent induced spectral shift and computational methods are found within the limiting values. Z‐scan results reveal saturable kind of behavior for 5a , 5b and 5c , whereas 5a and 5b show reverse saturable kind of behavior in acetone and ethanol and hence give optical limiting values. The two‐photon absorption cross section described by two‐level approximation is highest for 5b (251–300 GM).     

Synthesis of 1‐substituted 5‐aryl‐3‐styryl‐2‐pyrazolines and 3‐aryl‐5‐styryl‐2‐pyrazolines by the reaction of dibenzylideneacetones and E,E‐cinnamylideneacetophenones with hydrazines

The reaction of dibenzylideneacetones or E,E‐cinnamylidene‐ acetophenones and hydrazine hydrate provided 1‐propionyl derivatives of 5‐aryl‐3‐styryl‐2‐pyrazolines and 3‐aryl‐5‐styryl‐2‐pyrazolines. These unsaturated ketones afforded 1‐(2‐carboxyphenyl) or 1‐(4‐carboxyphenyl) 5‐aryl‐3‐styryl‐2‐pyrazolines and 1‐(4‐carboxyphenyl) derivatives of 3‐aryl‐5‐styryl‐2‐pyrazolines on treatment with (2‐carboxyphenyl)‐hydrazine or (4‐carboxyphenyl)hydrazine in hot acetic acid. Structures of all new 2‐pyrazolines have been elucidated by microanalyses and a combined utilization of various spectroscopic methods.     

Chiral Selectivity in the Binding of [4]Helicene Derivatives to Double‐Stranded DNA

The interaction of a series of chiral cationic [4]helicene derivatives, which differ by their substituents, with double‐stranded DNA has been investigated by using a combination of spectroscopic techniques, including time‐resolved fluorescence, fluorescence anisotropy, and linear dichroism. Addition of DNA to helicene solutions results to a hypochromic shift of the visible absorption bands, an increase of fluorescence quantum yield and lifetime, a slowing down of fluorescence anisotropy decay, and a linear dichroism in flow‐oriented DNA, which unambiguously points to the binding of these dyes to DNA. Both helicene monomers and dimeric aggregates, which form at higher concentration, bind to DNA, the former most probably upon intercalation and the latter upon groove binding. The binding constant depends substantially on the dye substituents and is, in all cases, larger with the M than the P enantiomer, by factors ranging from 1.2 to 2.3, depending on the dye.     

Spacer‐Modulated Differentiation Between Self‐Assembly and Folding Pathways for Bichromophoric Merocyanine Dyes

We have synthesized a large series of bis(merocyanine) dyes with varying spacer unit and investigated in detail their self‐organization behavior by concentration‐ as well as solvent‐dependent UV/Vis spectroscopy. Our in‐depth studies have shown that the self‐organization of the present bis(merocyanine) dyes is subtly influenced by the nature of the spacer unit. The utilization of rigid spacers results in the formation of self‐associated bimolecular complexes with high binding strength, while flexible spacers drive the respective bichromophoric dyes to intramolecular folding. Our thorough investigations on the impact of alkyl spacer chain length on the folding tendency of the present series of bis(merocyanine) dyes revealed a biphasic behavior, that is, a steep increase of the folding tendency for the dyes containing C4 to C7 chains and then a gentle decrease for dyes with longer alkyl spacer chains as evidenced by free energy (ΔG) values for the folding of these dyes. Furthermore, analyses of aggregates’ optical properties based on exciton theory as well as quantum chemical calculations suggest a bimolecular aggregate structure for the dye possessing a rigid spacer and a rotationally twisted pleated structure for the bis(merocyanine) dyes having spacer units with less than seven carbon atoms, while the application of longer alkyl chain linkers (≥C7) provides enough flexibility to orient the chromophores in electrostatically most favored antiparallel fashion.     

Quasi‐One‐Dimensional Electronic Systems Formed from Boron Dipyrromethene (BODIPY) Dyes

Synthetic strategies have been devised that allow the rational design and isolation of highly coloured boron dipyrromethene (BODIPY) dyes that absorb across much of the visible region. Each dye has an aryl polycycle (usually pyrene or perylene) connected to the central BODIPY core through a conjugated tether at the 3,5‐positions. Both mono‐ and difunctionalised derivatives are accessible, in certain cases containing both pyrene and perylene residues. For all new compounds, the photophysical properties have been recorded in solution at ambient temperature and in a glassy matrix at 77 K. The presence of the aryl polycycle(s) affects the absorption and emission maxima of the BODIPY nucleus, thereby confirming that these units are coupled electronically. Indeed, the band maxima and oscillator strengths depend on the conjugation length of the entire molecule, whereas there is no sign of fluorescence from the polycycle. As a consequence, the radiative rate constant tends to increase with each added appendage. The nature of the linkage (styryl, ethenyl, or ethynyl) also exerts an effect on the photophysical properties and, in particular, the absorption spectrum is perturbed in the region of the aryl polycycle. The perylene‐containing BODIPY derivatives absorb over a wide spectral range and emit in the far‐red region in almost quantitative yield. A notable exception to this generic behaviour is provided by the anthracenyl derivative, which exhibits charge‐transfer absorption and emission spectra in weakly polar media at ambient temperature. Regular BODIPY‐like behaviour is restored in a glassy matrix at 77 K. Overall, these new dyes represent an important addition to the range of strongly absorbing and emitting reagents that could be used as solar concentrators.