Clorobiocin biosynthesis in Streptomyces: identification of the halogenase and generation of structural analogs

Clorobiocin (clo) and novobiocin (nov) are potent inhibitors of bacterial DNA gyrase. The two substances differ in the substitution pattern at C-8' of the aminocoumarin ring, carrying a chlorine atom or a methyl group, respectively. By gene inactivation, clo-hal was identified as the gene of the halogenase responsible for the introduction of the chlorine atom of clorobiocin. Inactivation of cloZ did not affect clorobiocin formation, showing that this ORF is not essential for clorobiocin biosynthesis. Expression of the methyltransferase gene novO in the clo-hal(-) mutant led to the very efficient formation of a hybrid antibiotic containing a methyl group instead of a chlorine atom at C-8'. Comparison of the antibacterial activity of clorobiocin analogs with -Cl, -H, or -CH(3) at C-8' showed that chlorine leads to 8-fold higher activity than hydrogen and to 2-fold higher activity than a methyl group.     

Dioxygen activation and catalytic aerobic oxidation by a mononuclear nonheme iron(II) complex

We have used dioxygen, not artificial oxidants such as peracids, iodosylarenes, and hydroperoxides, in the generation of a mononuclear nonheme oxoiron(IV) complex, [Fe(IV)(TMC)(O)]2+ (TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane), from its corresponding Fe(II) complex, [Fe(TMC)(CF3SO3)2]. The formation of oxoiron(IV) species by activating dioxygen was markedly dependent on iron(II) complexes and solvents, and this observation was interpreted with the electronic effect of iron(II) complexes on dioxygen activation to form oxoiron(IV) species. A catalytic aerobic oxidation of organic substrates was demonstrated in the presence of the [Fe(TMC)]2+ complex. By carrying out 18O-labeled water experiment, we were able to conclude that the oxidation of organic substrates was mediated by an oxoiron(IV) intermediate, not by a radical type of autoxidation process.     

Accurate redox potentials of mononuclear iron, manganese, and nickel model complexes*

Density functional theory (DFT) was combined with solution of the Poisson equation for continuum dielectric media to compute accurate redox potentials for several mononuclear transition metal complexes (TMCs) involving iron, manganese, and nickel. Progress was achieved by altering the B3LYP DFT functional (B4(XQ3)LYP-approach) and supplementing it with an empirical correction term G(X) having three additional adjustable parameters, which is applied after the quantum-chemical DFT computations. This method was used to compute 58 redox potentials of 48 different TMCs involving different pairs of redox states solvated in both protic and aprotic solvents. For the 58 redox potentials the root mean square deviation (RMSD) from experimental values is 65 mV. The reliability of the present approach is also supported by the observation that the energetic order of the spin multiplicities of the electronic ground states is fulfilled for all studied TMCs, if the influence from the solvent is considered as well.     

Structural basis of regiospecificity of a mononuclear iron enzyme in antibiotic fosfomycin biosynthesis

Hydroxypropylphosphonic acid epoxidase (HppE) is an unusual mononuclear iron enzyme that uses dioxygen to catalyze the oxidative epoxidation of (S)-2-hydroxypropylphosphonic acid (S-HPP) in the biosynthesis of the antibiotic fosfomycin. Additionally, the enzyme converts the R-enantiomer of the substrate (R-HPP) to 2-oxo-propylphosphonic acid. To probe the mechanism of HppE regiospecificity, we determined three X-ray structures: R-HPP with inert cobalt-containing enzyme (Co(II)-HppE) at 2.1 ? resolution; R-HPP with active iron-containing enzyme (Fe(II)-HppE) at 3.0 ? resolution; and S-HPP-Fe(II)-HppE in complex with dioxygen mimic NO at 2.9 ? resolution. These structures, along with previously determined structures of S-HPP-HppE, identify the dioxygen binding site on iron and elegantly illustrate how HppE is able to recognize both substrate enantiomers to catalyze two completely distinct reactions.     

The reduction ofα,α,α,ω-tetrachloroalkanes by the action of thiols in the presence of iron compounds

Russian Chemical Bulletin -     

Elucidating the mode of action of a corrosion inhibitor for iron

Two polymetallic iron(III) complexes 1 and 2 have been synthesised from the known corrosion inhibitor 3-(4-methylbenzoyl)-propionic acid HL1 and their crystal structures determined. Coordination geometries extracted from these structures have been used as the basis for molecular modelling onto idealised iron(III) oxide surfaces as an aid to understanding the efficacy of inhibitors of the 4-keto acid type. The proposed mode of action involves 1,3-bridging didentate coordination of the carboxylate function of L1 to two FeIII ions, hydrogen-bond formation between the 4-keto group of L1 and a bridging surface hydroxy group, as well as close packing of the aromatic end groups, which should generate a hydrophobic barrier on the surface. Adsorption isotherm experiments have been used to compare the strengths of binding of related carboxylic acids onto iron(III) oxide surfaces and indicate that the presence of the 4-keto function leads to the formation of significantly more stable surface complexes.     

Crystal structure,magnetic and heat capacity properties of a new chiral mononuclear iron(II) compound

Journal of Thermal Analysis and Calorimetry - A new chiral mononuclear iron(II) compound, formulated as {[Fe(ACBP)3]·(ClO4)} (1,...     

Electronic structures,bonding, and spin state energetics of biomimetic mononuclear and bridged dinuclear iron complexes: a computational examination

Structural Chemistry - Mononuclear and dinuclear iron complexes are found as key intermediates in many synthetic and biocatalytic reactions, since many of these species are transient and have high...     

Glycopeptide biosynthesis in Amycolatopsis mediterranei DSM5908: function of a halogenase and a haloperoxidase/perhydrolase

Glycopeptides are important clinical emergency antibiotics consisting of a glycosylated and chlorinated heptapeptide backbone. The understanding of the biosynthesis is crucial for development of new glycopeptides. With balhimycin as a model system, this work focuses on the investigation of the putative halogenase gene (bhaA) and the putative haloperoxidase/perhydrolase gene (bhp) of the balhimycin biosynthesis gene cluster. An in-frame deletion mutant in the haloperoxidase/perhydrolase gene bhp (OP696) did not produce balhimycin. Feeding experiments revealed that bhp is involved in the biosynthesis of beta-hydroxytyrosine, a precursor of balhimycin. A bhaA in-frame deletion mutant (PH4) accumulated glycosylated but nonchlorinated balhimycin variants. The mutants indicated that only the halogenase BhaA is required for chlorination of balhimycin. Nonglycosylated and/or nonhalogenated metabolites can serve as starting points for combinatorial approaches for novel glycopeptides.     

The generation of neutral derivatives of low-valence iron, RFe(I), by netralization-reionization mass spectrometry

Neutralization-reionization mass spectrometry is applied for the generation of low-valence iron derivatives. Neutralization of Rfe(+) (R=H, F, Cl, Br, I, CN, OH, NH(2), acac, C(6)H(5)) ions resulted in the corresponding neutrals having lifetimes of at least 5 micros. Atom connectivities in RFe ions and neutrals were elucidated by a variety of tandem mass spectrometry techniques. The present study provides the first experimental evidence of the intrinsic stability of neutral IFe, NCFe, acacFe and C(6)H(5)Fe.     

Ligand topology effect on the reactivity of a mononuclear nonheme iron(IV)-oxo complex in oxygenation reactions

Mononuclear nonheme iron(IV)-oxo complexes with two different topologies, cis-α-[Fe(IV)(O)(BQCN)](2+) and cis-β-[Fe(IV)(O)(BQCN)](2+), were synthesized and characterized with various spectroscopic methods. The effect of ligand topology on the reactivities of nonheme iron(IV)-oxo complexes was investigated in C-H bond activation and oxygen atom-transfer reactions; cis-α-[Fe(IV)(O)(BQCN)](2+) was more reactive than cis-β-[Fe(IV)(O)(BQCN)](2+) in the oxidation reactions. The reactivity difference between the cis-α and cis-β isomers of [Fe(IV)(O)(BQCN)](2+) was rationalized with the Fe(IV/III) redox potentials of the iron(IV)-oxo complexes: the Fe(IV/III) redox potential of the cis-α isomer was 0.11 V higher than that of the cis-β isomer.     

Determination of metallic iron, iron(II) oxide, and iron(III) oxide in a mixture

A procedure is described for the estimation of metallic iron, ferrous oxide, and ferric oxide when present together. The sample is treated with bromine dissolved in ethanol, and filtered. Iron in the filtrate is titrated iodometrically, and corresponds to the metallic iron present in the mixture. The oxide residue is dissolved in hydrochloric acid under a carbon dioxide atmosphere. The iron(II) formed, equivalent to FeO present, is titrated with a standard vanadate solution, and the total iron(III) (FeO + Fe₂O₃) in the titrated solution is then estimated iodometrically.     

Quantum chemical studies of dioxygen activation by mononuclear non-heme iron enzymes with the 2-His-1-carboxylate facial triad

Density functional theory with the B3LYP hybrid functional has been used to study the mechanisms for dioxygen activation by four families of mononuclear non-heme iron enzymes: alpha-ketoacid-dependent dioxygenases, tetrahydrobiopterin-dependent hydroxylases, extradiol dioxygenases, and Rieske dioxygenases. These enzymes have a common active site with a ferrous ion coordinated to two histidines and one carboxylate group (aspartate or glutamate). In contrast to the heme case, this type of weak field environment always leads to a high-spin ground state. With the exception of the Rieske dioxygenases, which have an electron source outside the active site, the dioxygen activation process passes through the formation of a bridging-peroxide species, which then undergoes O-O bond cleavage finally leading to the four electron reduction of O(2). In the case of tetrahydrobiopterin- and alpha-ketoacid-dependent enzymes, the O-O heterolysis yields a high-valent iron-oxo species, which is capable of performing a two-electron oxidation chemistry on various organic substrates. For the other two families of enzymes (extradiol dioxygenases and Rieske dioxygenases) the substrate oxidation and the O-O bond cleavage are found to be coupled. In the extradiol dioxygenases the product of the O-O bond cleavage is a ferric iron with an oxy-substrate with a mixture of radical and anionic character, which is essential for the selectivity of the catechol cleavage.     

N-donor effects on carboxylate binding in mononuclear iron(II) complexes of a sterically hindered benzoate ligand

Using the sterically hindered 2,6-dimesitylbenzoate ligand Mes2ArCO2-, a series of mononuclear Fe(II) carboxylate complexes has been obtained with the general formula (Mes2ArCO2)2Fe(base)2 (base = 1-methylimidazole (MeIm), pyridine (Py), 2-picoline (2-Pic), 2,5-lutidine (2,5-Lut), 2,6-lutidine (2,6-Lut), (base)2 = N,N,N',N'-tetramethylethylenediamine (TMEDA)). For the monodentate base adducts, single-crystal X-ray diffraction studies revealed several different structural types ranging from distorted tetrahedral to distorted octahedral that correlate with the degree of alpha-substitution of the N-donors. Increasing alpha-substitution leads to the lengthening of the Fe-N bond, which in turn results in a change in carboxylate binding mode from eta 1 to eta 2. We surmise that this change is due to an electrostatic effect and is driven by increasing the Lewis acidity of the Fe center. Such a simple process for inducing carboxylate shifts could play a critical role in biological systems.