Synthesis and Fluorescence Studies of Some New Fluorophores and Their Effect on Hybridization of Oligodeoxyribonucleotides

Some novel fluorophores, viz. 6-(6-isobutyrylamino-1,3-dioxo-1H,3H-benzo[de]isoquinolin-2-yl)-hexanoic acid (1), 6-(6-dimethylamino-1,3-dioxo-1H, 3H-benzo[de]isoquinolin-2-yl)-hexanoic acid (2), 6-(6-benzoylamino-1, 3-dioxo-1H, 3H-benzo[de]isoquinolin-2-yl)-hexanoic acid (3), 6-(6-amino-1-oxo-1H, 3H-benzo[de]isoquinolin-2-yl)-hexanoic acid (4) and 6-(6-amino-1H,3H-benzo[de] isoquinolin-2-yl)-hexanoic acid (5) have been designed, synthesized and characterized. Their comparative fluorescence has been studied in different organic solvents and aqueous solutions containing inorganic ions. Out of these, two fluorophores, 1 and 2 have been used for labelling of nucleosides which were finally converted into their phosphoramidites, and used for labelling of oligodeoxyribonucleotides through covalent attachment. These fluorophores after attachment on oligodeoxyribonucleotides showed good fluorescence signals and higher hybridisation affinity than unlabelled oligodeoxyribonucleotides.     

Photophysics and Electrochemistry of some Thione Far-Red/Near-IR Triplet Emitters

The photophysics and cyclic voltammetry of two novel phosphorescent thiones, 2,2-dimethyl-indan-1-one-3-thione (DMIKT) and 2,2-dimethyl-indan-1,3-dithione (DMIDT), and three known phosphorescent thiones, 4H-pyran-4-thione (PT), 4H-1-benzopyran-4-thione (BPT) and 2,2-dimethylindan-1-thione (DMIT), have been characterised and compared. The phosphorescence emission of DMIT, DMIKT and DMIDT extends from the red into the near-IR spectral region. The additional carbonyl or thione group of DMIKT and DMIDT causes a significant shift in the emission maxima to 680 nm compared to that of DMIT, at 637 nm, in perfluorinated hydrocarbons. In acetonitrile the emission maxima of DMIKT and DMIDT are at 696 and 706 nm, respectively, and the spectra show vibronic bands which extend out beyond 850 nm. There is a significant reduction in triplet lifetime along this series (from 44 (±2) μs (DMIT) to 10 ((±0.8) μs (DMIKT) in perfluorinated solvents, and 8.6 (±0.5) (DMIT), 1.3 (±0.5) (DMIKT) and 0.35 (±0.07) μs (DMIDT) in acetonitrile), as well as a reduction in the rate constant for ground-state quenching of the triplet, (from 9.8 ((±0.9) to 3.5 ((±0.6) and 1.3 ((±0.2) × 10⁹ mol⁻¹ dm³ s⁻¹ for the same compounds). The addition of the C=O or C=S groups also causes a decrease in phosphorescence quantum yield with the highest emission quantum yield obtained for DMIT (Φ _P = 0.149 (±0.015)). Electrochemical studies show that while PT and BPT exhibit irreversible redox behaviour, DMIT, DMIKT and DMIDT all show at least one reversible reduction wave attributed to a one-electron process centred on the C=S moiety. The suitability of these lumophores for use in OLEDs is discussed.     

IR Evidences for N-9 and N-7 Regioisomers of the Acyclic Purine Nucleoside Analogues

The IR spectra have been recorded in the solid state for the parent molecule, 6-(N-pyrrolyl)purine (1) and its N-9-and N-7-substituted derivatives: 9-and 7-(2-hydroxyprop-1-yl)-6-(N-pyrrol-1-yl)purine (2 and 3), 9-and 7-(2-acetoxyprop-1-yl)-6-(N-pyrrol-1-yl)purine (4 and 5), 9-and 7-(2,3-dihydroxyprop-1-yl)-6-(N-pyrrol-1-yl)purine (6 and 7) as well as 9-and 7-(2,3-diacetoxyprop-1-yl)-6-(N-pyrrol-1-yl)purine (8 and 9). Analysis of the characteristic bands has proved to be useful in differentiating between N-9 and N-7 regioisomers.     

A Fluorescence Study of Novel Styrylindoles in Homogenous and Microhetrogeneous Media

In this paper are presented absorption and fluorescence emission properties of 3-styrylindoles viz. 3-(2-phenylethenyl-E)-NH-indole (1), 3-[2-(4-nitrophenyl)ethenyl-E)-NH-indole (2), 3-[2-(4-cyanophenyl)ethenyl-E]-N-ethylindole (3) and 3-[2-(4-cyanophenyl)ethenyl-E]-NH-indole (4) in organic solvents, 1,4-dioxane-water binary mixtures and micelles (SDS, CTAB and Triton-X-100). The fluorescence properties of 2-4 have been utilized to probe the microenvironment (binding constant, CMC, micropolarity and solubilization site) of the micelles.     

Structure-toxicity relationships of thiono and seleno phosphoramidate compounds: new type of acetylcholinesterase inhibitors

Novel thiono and seleno phosphoramidate compounds with the general formula (X)(Y)P(C₆H₅)₂; (X = NMe₂ & Y = S, 1a; X = NEt₂ & Y = S, 2a; X = NMe(CH₂Ph) & Y = S, 3a; X = NH(CH₂Ph) & Y = S, 4a; X = NEt(CH₂Ph) & Y = S, 5a; X = N(C(Me)₃) (CH₂Ph) & Y = S, 6a; X = N(CH₂Ph)₂ & Y = S, 7a; X = NMe₂ & Y = Se, 1b; X = NEt₂ & Y = Se, 2b; X = NMe(CH₂Ph) & Y = Se, 3b; X = NH (CH₂Ph) & Y = Se, 4b; X = NEt(CH₂Ph) & Y = Se, 5b; X = N(C(Me)₃)(CH₂Ph) & Y = Se, 6b and X = N(CH₂Ph)₂ & Y = Se, 7b) were prepared and characterized by ¹H, ³¹P and ¹³C NMR and IR spectroscopy and elemental analysis. ³¹P chemical shift of thiono and seleno derivatives didn’t show significant different because of their little difference in electronegativity sulfur and selenium. Hydrophobic parameter of compounds was determined by measurement of octanol-water partition coefficient by shake-flask technique. Determination of human erythrocyte acetylcholinesterase (hAChE) activity was carried out according to the Ellman’s modified kinetic method. IC₅₀ values of the selected thiono and seleno compounds varied from 3.4 to 0.11 and 9.9 to 5.1 mM, respectively. The seleno compounds show lower affinities for hAChE relative to the thino compounds. These results demonstrate that hydrophobic and electronic factors of the organophosphorus compounds play a key role on the inhibitory potency.     

Enlarged surface meshes and normalization conditions for columns and rows of matrices in the COSMO method

Earlier, normalization conditions for the columns of the PCM (Polarized Continuum Model) were determined and a method of enlarged surface meshes was developed. We developed similar methods for the COSMO (COnductor-like Screening MOdel). These methods make it possible to introduce larger surface meshes without loss of accuracy and perform fast calculations of the solvation energy and the Born radii in the SGB (Surface Generalized Born) method. In addition, the corrections proposed in this work provide a significant enhancement in the accuracy of numerical calculations.     

Finestructure, hyperfine structure and isotope shift of 4f 6s7s in Er I

The isotope shift (IS) and hyperfine structure (hfs) of nine levels (31720 to 38921 cm^-1) assigned to the configuration 4 f ¹² 6 s 7 s in neutral erbium have been determined experimentally using Doppler-reduced saturation absorption spectroscopy in a gas discharge. We performed a fine structure analysis in the SL-coupling scheme of the single configuration 4 f ¹² 6 s 7 s, confirming and extending the classification of even parity Er I levels. We discriminated the different hfs contributions of the 4f¹² core and the (6 s +7 s) outer electrons of the shell in a non-relativistic JJ-coupling approach and in the relativistic effective tensor operator formalism in SL-coupling. The relativistic one-electron parameters of the hfs for ¹⁶⁷Er were fitted to the experimental data by a least squares fit procedure: [0pt] a ⁰¹ _4f =-147(3) MHz, [0pt] a ¹⁰ _6s + a ¹⁰ _7s =-1840(30) MHz, [0pt] b ⁰² _4f =6560(80) MHz. The level dependencies of the isotope shift were evaluated based on crossed second order (CSO) effects. We obtained the following results for the CSO parameters for the isotope pairs ^170-168Er: d _6s7s =-740(30) MHz, z _4f = 0(5) MHz, ( g _3,6s ( f , 6 s )+ g _{3, 7s} ( f , 7 s ))= -24(15) MHz and for ^170-166Er: d _6s7s =-1500(50) MHz, z _4f =0(10) MHz, ( g _3,6s ( f ,6 s )+ g _3,7s ( f +7 s ))=-50(29) MHz. The resulting parameters for the hfs are compared with those known for other configurations of the Er atom and ion. Received 16 May 1999 and Received in final form 31 January 2000     

Investigations on the Photoreactions of Phenothiazine and Phenoxazine in Presence of 9-cyanoanthracene by Using Steady State and Time Resolved Spectroscopic Techniques

By using electrochemical, steady state and time resolved (fluorescence lifetime and transient absorption) spectroscopic techniques, detailed investigations were made to reveal the mechanisms of charge separation or forward electron transfer reactions within the electron donor phenothiazine (PTZH) or phenoxazine (PXZH) and well known electron acceptor 9-cyanoanthracene (CNA). The transient absorption spectra suggest that the charge separated species formed in the excited singlet state resulted from intermolecular photoinduced electron transfer reactions within the donor PTZH (or PXZH) and CNA acceptor relaxes to the corresponding triplet state. Though alternative mechanisms of via formations of contact neutral radical by H-transfer reaction have been proposed but the observed results obtained from the time resolved measurements indicate that the regeneration of ground state reactants is primarily responsible due to direct recombination of triplet contact ion-pair (CIP) or solvent-separated ion-pair (SSIP).     

One and two-photon detachment cross-sections of Ps-

We present detailed calculations for one- and two-photon above-threshold detachment (ATD) cross-sections of the negative positronium ion Ps ^- ( e ⁺ e ^- e ^- ), below the threshold of Ps(n = 2), using a configuration interaction (CI) method on a B splines basis. Both the one- and two-photon detachment cross-sections have a form similar to the corresponding spectra of the H^- ion, scaled accordingly. The peak value of the one-photon cross-section agrees very well with the calculations by Bathia and Drachman [1], while it differs from those by Igarashi et al. [2], which give a value of 15% lower. Two-photon detachment cross-sections are also reported. Received 24 January 2002 / Received in final form 9 April 2002 Published online 19 July 2002     

Electron-pair densities of group 2 atoms in their and terms

Electron-pair intracule (relative motion) and extracule (center-of-mass motion) densities are studied in both position and momentum spaces for the ¹ P and ³ P terms of the group 2 atoms Be (atomic number Z =4), Mg (Z =12), Ca (Z =20), Sr (Z =38), Ba (Z =56), and Ra (Z =88). In position space, the ¹ P - ³ P difference in the intracule densities shows that the probability of a small interelectronic distance is larger in the triplet for all the six atoms, as reported for the lightest Be atom in the literature. The position-space extracule density clarifies that the triplet electrons are more likely to be at opposite positions with respect to the nucleus than the singlet electrons for all the atoms. In momentum space, the singlet generally has a larger probability of a small relative momentum between two electrons as a na?ve manifestation of the Fermi hole in the triplet. The extracule density in momentum space shows that the ¹ P term has a distribution larger in a large center-of-mass momentum region than the ³ P term. Received: 26 August 1998 / Received in final form: 1 February 1999     

Theoretical study on structures and stability of SiC3S isomers

Various levels of calculations are carried out to explore the potential energy surfaces (PES) of singlet and triplet SiC₃S, a molecule of potential interest in interstellar chemistry. At the DFT/B3LYP/6-311G(d) level, a total of 57 minimum isomers and 92 interconversion transition states are located. The structures of the most relevant isomers and transition states are further optimized at the QCISD/6-311G(d) level followed by CCSD(T)/6-311?+?G(2df) single-point energy calculations. At the QCISD level, the lowest-lying isomer is the chain-like SiCCCS ³ 1 (0.0?kcal/mol) with a great kinetic stability of 54.1?kcal/mol. In addition, ring isomers CC-cCSSi ¹ 9 (19.8?kcal/mol), S-cCCCSi ¹ 12 (30.4?kcal/mol), S-cCCSiC ¹ 18 (9.4?kcal/mol), S-cSiCCC ¹ 21 (34.4?kcal/mol) and cage-like isomer cage-SiSCCC ¹ 23 (51.8?kcal/mol) also possess considerable kinetic stability (more than 10.0?kcal/mol). As a result, these six isomers are predicted to be possible candidates for future experimental and astrophysical detection. The bond natures and possible formation pathways in interstellar space of the SiCCCS are discussed. The predicted structure and spectroscopic properties for it are expected to be informative for the identification of SiC₃S and even larger SiC _n S species either in laboratory or in space.     

DFT/TDDFT investigation of the electronic structures and optoelectronic properties of phosphorescent iridium (III) complexes with non-conjugated cyclometalated carbene ligands

This work investigates the electronic structures and spectroscopic properties of several cyclometalated iridium carbene complexes possessing at least one functionalized methylene moiety, (dfpmb)(dfbmb)Ir(mptz) (2), (dfbmb)₂Ir(mptz) (3), and (dfbmb)₂Ir(mpmtz) (4) (dfpmbH =1-difluorophenyl-3-methyl-benzimidazoline-2-ylidene; dfbmbH?=?1-(2,4-difluorobenzyl)-3-(methylbenzimidazolium; mptzH?=?4-methyl-2-(5-(trifluoromethyl)-2H-1,2,4-triazol-3-yl)pyridine); mpmtzH?=?4-methyl-2-(3-methylene-5-(trifluoromethyl)- 2H-1,2,4-triazole-3-yl)pyridine) on the basis of their prototype (dfpmb)₂Ir(mptz) (1) via DFT and TDDFT methods. A careful examination of results shows: (1) the patterns of the occupied orbitals for 1–4 are almost the same, with the HOMO being an admixture of the Ir atom and benzyl part, whereas the LUMO is predominately delocalized over the ancillary chelate mptz or mpmtz; (2) complexes 1–3, and especially 4, all exhibit blue emission with maximum wavelengths at 506, 495, 486, and 478?nm, respectively; (3) complex 4 with the highest (relative) component of ³MLCT can be reasonably expected to have a higher radiative transition rate constant (k_r ) among 1–4. From the highest absorption peaks, eventually, the molar extinction coefficient discrepancy between experiment and calculations might be tentatively attributable to the synergism of the intrinsic imperfection of the PCM model and the simplification of chemical computations.     

Energy loss of 18 keV electrons in gaseous T and quench condensed D films

Measurements of the energy loss of fast electrons at an energy of 18 keV have been performed on molecules of hydrogen isotopes, gaseous T ₂ and frozen D ₂ . Whereas in the case of gaseous T ₂ the values of total inelastic cross-section ( cm² for E = 18.6 keV), average energy loss ( eV) and peak position of the energy loss spectra ( eV) agree well with the expectations, the corresponding values for quench condensed D ₂ differ significantly from the ones for gaseous T ₂ . We observe a significant lower total inelastic cross-section ( cm², for E = 18.6 keV) larger average energy loss ( eV) and higher peak position ( eV). These differences may be interpreted in terms of changes of the final state spectrum. A CI calculation for a D ₂ cluster shows indeed a clear shift of the excited states in agreement with the observation. Received 24 August 1999     

Twin Paradox and the Logical Foundation of Relativity Theory

We study the foundation of space-time theory in the framework of first-order logic (FOL). Since the foundation of mathematics has been successfully carried through (via set theory) in FOL, it is not entirely impossible to do the same for space-time theory (or relativity). First we recall a simple and streamlined FOL-axiomatization Specrel of special relativity from the literature. Specrel is complete with respect to questions about inertial motion. Then we ask ourselves whether we can prove the usual relativistic properties of accelerated motion (e.g., clocks in acceleration) in Specrel. As it turns out, this is practically equivalent to asking whether Specrel is strong enough to “handle” (or treat) accelerated observers. We show that there is a mathematical principle called induction (IND) coming from real analysis which needs to be added to Specrel in order to handle situations involving relativistic acceleration. We present an extended version AccRel of Specrel which is strong enough to handle accelerated motion, in particular, accelerated observers. Among others, we show that~the Twin Paradox becomes provable in AccRel, but it is not provable without IND.     

Conformational Analysis of Baclofen Analogues by 1H and 13C NMR: Phaclofen,Saclofen, and Hydroxy-Saclofen. Influence of the Anionic Moiety

The conformations of three analogues of baclofen 1: phaclofen, saclofen, and hydroxy-saclofen 2–4, potent GABA_B antagonists, in solution (D₂O) are estimated from high-resolution (300 MHz) H NMR coupling data. Conformations and populations of conformers are calculated by means of a modified Karplus-like relationship for the vicinal coupling constants. H NMR spectral analysis evidences how 1–3 keep in solution the preferred a conformation around C3-C4 bond. A partial rotation is set up around C2–C3 bond (the conformations about C2–C3 are all highly populated in solution) particularly for 2 and 3 while 1 shows a relative preferred a conformation. This evidences the influence of the anionic moiety.     

Proton and Carbon‐13 NMR Studies of Some Tryptamines,Precursors, and Derivatives: Ab Initio Calculations for Optimized Structures

Abstract

Proton and carbon‐13 NMR data are presented for 5‐methoxytryptamine, 1; 6‐methoxytryptamine, 2; N,N‐diisopropyl‐5‐methoxytryptamine, 3, (5‐MeO‐DIPT); and N,N‐diisopropyl‐5‐methoxyindole‐3‐glyoxylamide, 4, at 300 MHz (¹H) and 75 MHz (¹³C) in CDCl₃ at ambient temperature. Compound 3, considered a potential hallucinogen, had been placed into Schedule I of the Controlled Substances Act, effective April 4, 2003, by the U.S. Drug Enforcement Administration. Compound 4 can serve as a possible precursor to 3. We believe that these are the first proton NMR assignments obtained at medium field (7 tesla) using selective homodecoupling and two‐dimensional homonuclear chemical shift correlation spectra (using one or more of the COSY45, COSY90, and COSYLR experiments) for rigorous aryl proton assignments in this group of compounds. Significant observed differences in the proton and carbon‐13 NMR spectra should allow facile distinction of the 5‐methoxy series, 1 and 3, from the 6‐methoxy series, 2. Energy minimizations to obtain optimized structures for each compound were performed at the Hartree–Fock level with the 6‐31G* basis set, and the resulting geometries are discussed. The presented geometry calculations appear to be the most accurate reported to date for 1 based on the basis set employed, and the first HF/6‐31G* structures for compounds 2, 3, or 4. Appreciable geometry differences in 3 and 4 for the pendant sidechain containing the N[CH(CH₃)₂]₂ moiety are noteworthy. Proximity of the carbonyl oxygens in 4 to H2 and H4 is suggested as a possible contributing factor in the deshielding of these protons in the NMR spectrum.     

Experimental determination of spin-rotation and spin-spin magnetic interactions in by nuclear spin conversion

When a gas sample of ¹³CH₃F is prepared with a population of isomers (ortho and para forms) far from the equilibrium given by nuclear spin statistics, it relaxes towards this equilibrium with an exponential decay rate. This phenomenon called nuclear spin conversion is mainly governed by intramolecular spin-spin and spin-rotation interactions. In the quantum relaxation model [P.L. Chapovsky, Phys. Rev. A 43, 3624 (1991)], two pairs of ortho-para levels (J = 9, K = 3; J' = 11, K' = 1) and (J = 20, K = 3; J' = 21, K' = 1) are principally responsible for the conversion. The levels of the second pair are coupled by both spin-spin and spin-rotation interactions. The application of an electric field (up to 10 kV/cm) induces a crossing of the Stark components of this pair, which is observed for the first time. A specific experimental set-up based on an electric field of alternating triangular shape is used, which allows the determination of the strength of both interactions via the measurement of the spin conversion decay rates. This work yields the first experimental value for the electronic contribution to the spin-rotation interaction in ¹³CH₃F. Received 23 May 2002 / Received in final form 18 September 2002 Published online 21 January 2003 RID="a" ID="a"e-mail: Patrice.Cacciani@univ-lille1.fr     

Theoretical study of the photo-isomerisation reactions of 1,2-dihydro-1,2-phosphaborine and 1,2-dihydro-1,2-alumazaine

The mechanisms of the photochemical isomerisation reactions are investigated theoretically using the model systems, 1,2-dihydro-1,2-phosphaborine (5) and 1,2-dihydro-1,2-alumazaine (6), using the CAS(6,6)/6-311G(d,p) and MP2-CAS-(6,6)/6-311++G(3df,3pd)//CAS(6,6)/6-311G(d,p) methods. For each model reactant, three reaction pathways, which lead to three kinds of photo-isomers, are examined. The structures of the conical intersections, which play a key role in such photo-rearrangements, are determined. The thermal (or dark) reactions of the reactant species are also examined, using the same level of theory, to provide a qualitative explanation of the reaction pathways. These model investigations demonstrate that the preferred reaction route for these two aromatic heterocyclics is as follows: reactant → Franck–Condon region → conical intersection → photoproduct. The theoretical evidences anticipate that after irradiation of 5, the photoproduct yield of the Dewar BP-isomer, 8, should be larger than that of the Dewar BP-isomer, 7, whereas no Dewar BP-isomer 9 can be observed. Moreover, the present theoretical data predict after irradiation of 6, all three Dewar AlN-isomers (10, 11, and 12) and the starting molecule, 6, are produced.     

Prediction of the linear and nonlinear optical properties of tetrahydronaphthalone derivatives via long-range corrected hybrid functionals

The linear and nonlinear optical (NLO) properties of methoxybenzylidene (1) and thiophen-2-ylmethylidene (2) tetrahydronaphthalone derivatives are studied using long-range corrected density functional theory (LC-DFT). The calculated hyperpolarisabilities indicate that both compounds have measurable NLO properties (approximately one to two times the hyperpolarisability of p-nitroaniline). Charge-transfer indices and time-dependent DFT calculations suggest that the NLO properties are a result of a charge-transfer excitation, which is typical in conjugated donor–acceptor structures. The ultraviolet–visible spectra of 1 and 2 are also predicted using gap-fitting schemes, and these data are used to assess how accurately the hyperpolarisabilities of 1 and 2 could be estimated by the solvatochromic method.     

Photofragmentation of hydrated iron ions Fe(HO) () at 532, 355 and 266 nm

Photofragmentation of Fe(H₂O)n ⁺ clusters (n =1-9) is investigated at three different wavelengths, 532, 355 and 266 nm. Two fragmentation pathways are observed depending essentially on the photon energy, but also on the parent size n. The fragmentation products belong to two ion families, Fe(H₂O)m ⁺ and FeOH(H₂O)m ⁺ , which correspond to dehydration and intracluster dehydrogenation reactions respectively. The ion yields are studied as a function of the laser fluence in order to determine the number of photons implied in the photofragmentation process. This allows us to estimate that the D[(H₂O)_n-1Fe^+-(H₂O)] bond energy is ranging between 0.44 eV and 0.55 eV for .Photon absorption cross sections are also derived from the fluence experiments, and two different behaviors are observed: i) At 355 nm, far away from any transition, progressive solvation of the metal ion results in an increasing absorption cross section from n =2 to n =9. This can be attributed to a forbidden transition of bare , which becomes progressively allowed because of the interaction with more and more water ligands. ii) At 266 nm, close to several allowed transitions of bare , a distinct maximum is observed for the absorption of ion. It may be attributed to a change in the spin multiplicity when switching from and on one hand to Fe(H₂O) on the other. Received: 11 November 1997 / Revised: 18 February 1998 / Accepted: 22 April 1998