Theoretical study on the protonation of bambus[6]uril

Abstract  

Quantum mechanical density functional theory (DFT) calculations were used to derive the most probable structures of the bambus[6]uril·H₃O⁺ and bambus[6]uril·(H₃O⁺)₂ cationic complex species. In these two complexes, each of the considered H₃O⁺ ions is bound by three strong linear hydrogen bonds to the three corresponding carbonyl oxygens of the parent macrocyclic receptor.     

Theoretical study on the complexation of bambus[6]uril with the chloride, bromide, and iodide anions

Abstract  

By using quantum mechanical DFT calculations, the most probable structures of the bambus[6]uril·Cl⁻, bambus[6]uril·Br⁻, and bambus[6]uril·I⁻ anionic complex species were derived. In these three complexes, each of the considered univalent halide anions, included in the center of the macrocyclic cavity, is bound by 12 weak C–H⋯X⁻ (X⁻ = Cl⁻, Br⁻, I⁻) hydrogen bonds between methine hydrogen atoms on the convex face of the glycoluril units and the respective anion. The lengths of the C–H⋯X⁻ hydrogen bonds increase in the order Cl⁻ < Br⁻ < I⁻.     

Experimental evidence, stability, and the most probable structure of protonated p-tert-butylcalix[4]arenetetrakis(N,N-dimethylacetamide)

Abstract  

From extraction experiments and γ-activity measurements, the extraction constant corresponding to the equilibrium H₃O⁺(aq) + 1·Na⁺(nb) \leftrightarrows \leftrightarrows 1·H₃O⁺ (nb) + Na⁺ (aq) taking place in the two-phase water–nitrobenzene system (1 = p-tert-butylcalix[4]arenetetrakis(N,N-dimethylacetamide); aq = aqueous phase, nb = nitrobenzene phase) was evaluated as log K _ex (H₃O⁺, 1·Na⁺) = −0.1 ± 0.1. Further, the stability constant of the 1·H₃O⁺ complex in water-saturated nitrobenzene was calculated for a temperature of 25 °C as log β _nb (1·H₃O⁺) = 10.9 ± 0.2. By using quantum mechanical DFT calculations, the most probable structure of the 1·H₃O⁺ cationic complex species was derived. In this complex, the hydroxonium ion H₃O⁺ is bound partly to one phenoxy oxygen atom and partly to two carbonyl oxygens of 1 by strong hydrogen bonds and obviously by other electrostatic interactions.     

Synthesis and crystal structure of (H3O)2{(Na2(OH)CB[5])2[HV4O12]}Cl · 14H2O

The compound (H₃O)₂{(Na₂(OH)CB[5])₂[HV₄O₁₂]}Cl · 14H₂O is synthesized by heating (120°C) of a mixture of sodium vanadate, cucurbit[5]uril (CB[5]), rubidium chloride, and water in a sealed ampule. According to the X-ray diffraction data, the binding of the [Na₂(OH)]⁺ binuclear cation with CB[5] occurs due to the bidentate coordination of the oxygen atoms of the portals of cucurbit[5]uril to the sodium atoms. The tetranuclear vanadium complex [HV₄O₁₂]^3? serves as a bridge, joining infinite chains {Na₂(OH)CB[5]} _∞ ⁺ in pairs.     

Synthesis and crystal structure of a supramolecular adduct of trinuclear molybdenum oxocluster with macrocyclic cavitand cucurbit[5]uril containing the included ionic associate Na<Superscript>+</Superscript>...Cl...Na<Superscript>+</Superscript>

The compound of composition [{Mo₃O₄(H₂O)₆Cl₃}₂(Na₂Cl⊂ C₃₀H₃₀N ₂₀O₁₀)]Cl₃⋅14H₂O (1) was prepared by evaporation of a hydrochloric acid solution containing NaCl, the trinuclear aqua complex [Mo₃O₄(H₂O)₉]⁴⁺, and the macrocyclic cavitand cucurbit[5]uril (C₃₀H₃₀N₂₀O₁₀). X-ray diffraction analysis demonstrated that the cucurbit[5]uril molecule is closed on both sides by the cluster cations through hydrogen bonding between the CO groups of the cucurbit[5]uril portals and the aqua ligands of the oxo cluster. The inner cavity of the supramolecular adduct includes an unusual ionic associate Na⁺...Cl...Na⁺. The sodium cations are coordinated by five carbonyl oxygen atoms of each portal of the macrocycle. Compound 1 is the first structurally characterized complex, in which the macrocyclic cucurbit[5]uril ligand is directly coordinated to the alkali metal cation. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1513–1517, July, 2005.     

Stability constants of the Li+, Na+, H3O+, NH4+, Ag+, and K+ complexes of the cone conformer of tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate in nitrobenzene saturated with water

Abstract  

From extraction experiments in the two-phase water–nitrobenzene system and γ-activity measurements, the stability constants of the tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate (cone)·M⁺ complexes (M⁺ = Li⁺, H₃O⁺, NH₄ ⁺, Ag⁺, or K⁺) were determined in water-saturated nitrobenzene. It was found that these constants increase in the cation order NH₄ ⁺ < K⁺ < H₃O⁺ < Ag⁺ < Li⁺ < Na⁺.     

Anion encapsulation by Ln(III)/K(I) heterobismetal-capped cucurbit[5]uril

Three Ln(III)/K(I) (Ln = La, Ce and Nd) heterobismetal-capped cucurbit[5]uril molecular capsules, {[LaK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₂·8H₂O (1), {[CeK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₄(H₃O)₂ ^2 + ·8H₂O (2) and {[NdK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₂·12.5H₂O (3), were synthesised by self-assembly in aqueous solution, and their anion encapsulation property was confirmed by X-ray crystallography. The effect of the lanthanide cation radius on the structure of the heterobismetal-capped cucurbit[5]uril molecular capsules has been investigated.     

Thermal transformations of the supramolecular compound of cucurbit[8]uril with cobalt(III) complex {<Emphasis Type="Italic">trans</Emphasis>-[Co(en)<Subscript>2</Subscript>Cl<Subscript>2</Subscript>]@CB[8]}Cl·17 H<Subscript>2</Subscript>O

The thermal decomposition of hydrated cucurbit[8]uril C₄₈H₄₈N₃₂O₁₆·20H₂O (CB[8]) and the inclusion compound of cucurbit[8]uril with cobalt(III) complex {trans-[Co(en)₂Cl₂]@CB[8]}Cl·17 H₂O was studied in the inert atmosphere by TG, TM, and DSC methods. The dehydration of (C₄₈H₄₈N₃₂O₁₆)·20H₂O (at 320–390 K), and the decomposition of cucurbituril itself (at 620–720 K) are accompanied by a decrease in the sample volume. The inclusion compound loses water molecules at 320–380 K; dehydration is accompanied by an increase in the sample volume. The decomposition (pyrolisis) of the anhydrous compound takes place at 620–720 K; the decomposition is forestalled by a continued increase in the sample volume with an endothermic peak (490–600 K), and only the mass loss (620–720 K) is accompanied by a decrease in the sample volume. The included guest complex does not lose amines until the decomposition process is complete; the previously observed increase in the sample volume is explained by the expansion of cavitand molecules due to a distortion of the included [Co(en)₂Cl₂]⁺ complex on heating.     

Extraction and DFT study on the complexation of H3O+ ion with tetrakis(2-ethoxyethoxy)-tetra-p-tert-butylcalix[4]arene

Abstract  

Extraction experiments in the two-phase water/nitrobenzene system and γ-activity measurements were used to determine the stability constant of protonated tetrakis(2-ethoxyethoxy)-tetra-p-tert-butylcalix[4]arene in nitrobenzene saturated with water. Density functional theory (DFT) calculations were applied to derive the most probable structure of the tetrakis(2-ethoxyethoxy)-tetra-p-tert-butylcalix[4]arene·H₃O⁺ complex species.     

Crystal structure of a La(III) complex with macrocyclic cavitand cucurbit[6]uril

Slow evaporation in air of a lanthanum nitrate solution containing macrocyclic cavitand cucurbit[6]uril yields a complex of the composition of [La(H₂O)₆(X@C₃₆H₃₆N₂₄O₁₂)(NO₃)](NO₃)₂· 6.96H₂O (X = 0.5C₅H₅N + 0.5H₂O). The complex is structurally characterized using single crystal X-ray diffraction. Lanthanum atoms are coordinated with oxygen atoms of carbonyl groups of cucurbit[6]uril portals. The compound crystallizes in the orthorhombic crystal system, space group Pnn2, unit cell parameters (150 K): a = 11.997(2) Å, b = 17.093(3) Å, c = 14.133(3) Å, V = 2899.3(10) ų, Z = 2. Lanthanum atoms are disordered, alternative positions being related by the two-fold axis. The complex has an island structure. A pyridine molecule occupies an internal cavity of one half of cucurbit[6]uril molecules, while a water molecule occupies the other.     

Potassium salts of hypodiphosphoric acid

The synthesis and crystal structures of a series of six crystalline potassium salts of hypodiphosphoric acid, H₄P₂O₆, are reported, namely potassium hydrogen phosphonophosphonate, K⁺·H₃P₂O₆⁻, (I), dipotassium dihydrogen hypodiphosphate monohydrate, 2K⁺·H₂P₂O₆²⁻·H₂O, (II), dipotassium dihydrogen hypodiphosphate dihydrate, 2K⁺·H₂P₂O₆²⁻·2H₂O, (III), pentapotassium hydrogen hypodiphosphate dihydrogen hypodiphosphate dihydrate, 5K⁺·HP₂O₆³⁻·H₂P₂O₆²⁻·2H₂O, (IV), tripotassium hydrogen hypodiphosphate tetrahydrate, 3K⁺·HP₂O₆³⁻·4H₂O, (V), and tetrapotassium hypodiphosphate tetrahydrate, 4K⁺·P₂O₆⁴⁻·4H₂O, (VI). All the hypodiphosphate anions, viz. H₃P₂O₆⁻, H₂P₂O₆²⁻, HP₂O₆³⁻ and P₂O₆⁴⁻, adopt a staggered conformation. The P—P bond lengths [2.1722 (7)–2.1892 (10) Å] do not depend on the basicity of the anion. The compounds are organized into different types of one‐, two‐ or three‐dimensional polymeric hydrogen‐bonded networks, or simply exist in the form of isolated or dimeric units. The coordination numbers of the K⁺ cations range from 6 to 9, and the cationic sublattices are polymeric one‐, two‐ or three‐dimensional networks, or isolated [KO₆] or dimeric [K₂O₁₂] polyhedra.     

Synthesis and crystal structure of a supramolecular adduct of the aqua nitrato complex of gadolinium [Gd(NO<Subscript>3</Subscript>)(H<Subscript>2</Subscript>O)<Subscript>7</Subscript>]<Superscript>2+</Superscript> with macrocyclic cavitand cucurbit[6]uril

A supramolecular adduct of gadolinium aqua nitrato complex and cucurbit[6]uril { [Gd(NO₃)(H₂O)₇](C₅H₅N)@(C₃₆H₃₆N₂₄O₁₂)}(NO₃)₂·10H₂O is obtained by slow diffusion of methanol into an aqueous solution containing gadolinium nitrate, pyridine, and cucurbit[6]uril. According to single crystal X-ray diffraction data, water molecules coordinated to metal atom make hydrogen bonds to polarized carbonyl groups of the macrocycle. The heptaaquanitratogadolinium(III) [Gd(NO₃)(H₂O)₇]²⁺ cation is structurally characterized for the first time. Crystal system is triclinic, space group \(P\overline 1 \), a = 12.3137(4) Å, b = 14.2334(5) Å, c = 19.5629(6) Å; α = 80.850(1)°, β = 86.879(1)°, γ = 68.855(1)°; V = 3157.15(18) ų, Z = 2. Oriented hydrogen-bonded chains of alternating cucurbit[6]uril molecules and gadolinium aqua cations form in the crystal structure.     

Protonation of electroneutral p-tert-butylcalix[4]arenetetraacetic acid

Abstract  

Using ¹H NMR spectroscopy together with density functional theoretical calculations, it is shown that electroneutral p-tert-butylcalix[4]arenetetraacetic acid forms an equimolar complex with a proton in the form of the H₃O⁺ ion in nitrobenzene-d ₅. Protons were offered by hydrogen bis(1,2-dicarbollyl)cobaltate and converted to hydroxonium ions by traces of water. In the resulting complex, the H₃O⁺ cation is bound by strong hydrogen bonds to two phenoxy oxygen atoms of the parent calix[4]arene ligand and to one carbonyl oxygen of the corresponding COOH group of this ligand.     

Photodissociation of protonated β-diketones in the gas phase

The gas phase photodissociation spectra of four protonated β-diketones were obtained and compared with the absorption spectra of the corresponding ions in solution. Protonated 2,4-pentanedione was observed to undergo the photodissociation process [C₅H₉O₂]⁺ +hν → [CH₃CO]⁺ +C₃H₆O with a λmax at 276±10 nm compared with a solution absorption maximum at 286 nm. Protonated 2,4-hexanedione was observed to undergo the photodissociation processes [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O and [C₆H₁₁O₂]⁺ +hν → [C₂H₅CO]⁺ +C₃H₆O with a λmax at 279±10 nm compared with a solution absorption maximum at 288 nm. Protonated 3-methyl-2,4-pentanedione was observed to undergo the photodissociation process [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O with a λmax at 295±10 nm compared with a solution absorption maximum at 305 nm. Protonated 1,1,1-trifluoro-2,4-pentanedione was observed to undergo the photodissociation process [C₅H₆F₃O₂]⁺ +hν → CF₃H+[C₄H₅O₂]⁺ with a λmax at 273±10 nm compared with a solution absorption maximum at 288 nm. The [CH₃CO]⁺ and [C₂H₅CO]⁺ produced photochemically with the first three ions react to regenerate the protonated β-diketone leading to a photostationary state. Photodissociation of the protonated alkyl β-diketones is believed to occur from the protonated keto form, whereas photodissociation of protonated 1,1,1-trifluoro-2,4-pentanedione is believed to occur from the protonated enol form. Mechanisms for the observed photodissociation processes are proposed and comparisons with results from related techniques are presented.     

Supramolecular approach to crystallization of polynuclear chromium(III) aqua hydroxo complexes: synthesis and crystal structures of complexes [Cr2(OH)2(H2O)8]4+ and [Cr4(OH)6(H2O)12]6+ with cucurbit[n]uril (n = 7, 8)

Supramolecular compounds of the compositions {[Cr₂(OH)₂(H₂O)₈](C₄₂H₄₂N₂₈O₁₄)₂}-(NO₃)₄·18.75H₂O (1) and {[Cr₄(OH)₆(H₂O)₁₂](C₄₈H₄₈N₃₂O₁₆)₃(NO₃)₆·55H₂O (2) were synthesized from aqueous solutions of chromium(III) nitrate and the macrocyclic cavitand cucurbit[n]uril (C_6n H_6n N_4n O_2n , where n = 7 or 8, respectively). According to the X-ray diffraction study, the polynuclear chromium aqua complexes are disposed in cavities formed by the cucurbit[n]uril molecules and are linked to these molecules through hydrogen bonds between the hydroxo and aqua ligands of the polycations and the portal oxygen atoms of the macrocycles. Compound 1 is the first example of supramolecular compounds of cucurbit[7]uril with metal aqua complexes. The isolation of the supramolecular adduct with cucurbit[8]uril 2 in the single-crystalline state allows the determination of the structure of the tetranuclear chromium aqua complex having an adamantane-like structure, [Cr₄(μ₂-OH)₆(H₂O)₁₂]⁶⁺, which has been previously unknown in the solid state.     

On the protonation of dibenzo-18-crown-6

Abstract  

The stability constant of the dibenzo-18-crown-6·H₃O⁺ cationic complex species dissolved in nitrobenzene saturated with water has been determined from extraction experiments in the two-phase water–nitrobenzene system and from γ-activity measurements. Various structures of protonated dibenzo-18-crown-6 are discussed.     

Structures of decomposing and non-decomposing gas-phase [C4H6O]+· radical cations,and their [C2H2O]+· and [C3H6]+· product ions

The structures of gas-phase [C₄H₆O]^+· radical cations and their daughter ions of composition [C₂H₂O]^+· and [C₃H₆]^+· were investigated by using collisionally activated dissociation, metastable ion measurement, kinetic energy release and collisional ionization tandem mass spectrometric techniques. Electron ionization (70 eV) of ethoxyacetylene, methyl vinyl ketone, crotonaldehyde and 1-methoxyallene yields stable [C₄H₆O]^+· ions, whereas the cyclic C₄H₆O compounds undergo ring opening to stable distonic ions. The structures of [C₂H₃O]^+· ions produced by 70-eV ionization of several C₄H₆O compounds are identical with that of the ketene radical cation. The [C₃H₆]^+· ions generated from crotonaldehyde, methacrylaldehyde, and cyclopropanecarboxaldehyde have structures similar to that of the propene radical cations, whereas those ions generated from the remainder of the [C₄H₆O]^+· ions studied here produced a mixed population of cyclopropane and propene radical cations.     

Pharmaceutical salts of emoxypine with dicarboxylic acids

New salt forms of the antioxidant drug emoxypine (EMX, 2‐ethyl‐6‐methylpyridin‐3‐ol) with pharmaceutically acceptable maleic (Mlt), malonic (Mln) and adipic (Adp) acids were obtained {emoxypinium maleate, C₈H₁₂NO⁺·C₄H₃O₄⁻, [EMX+Mlt], emoxypinium malonate, C₈H₁₂NO⁺·C₃H₃O₄⁻, [EMX+Mln], and emoxypinium adipate, C₈H₁₂NO⁺·C₆H₉O₄⁻, [EMX+Adp]} and their crystal structures determined. The molecular packing in the three EMX salts was studied by means of solid‐state density functional theory (DFT), followed by QTAIMC (quantum theory of atoms in molecules and crystals) analysis. It was found that the major contribution to the packing energy comes from pyridine–carboxylate and hydroxy–carboxylate heterosynthons forming infinite one‐dimensional ribbons, with [EMX+Adp] additionally stabilized by hydrogen‐bonded C(9) chains of Adp⁻ ions. The melting processes of the [EMX+Mlt] (1:1), [EMX+Mln] (1:1) and [EMX+Adp] (1:1) salts were studied and the fusion enthalpy was found to increase with the increase of the calculated lattice energy. The dissolution process of the EMX salts in buffer (pH 7.4) was also studied. It was found that the formation of binary crystals of EMX with dicarboxylic acids increases the EMX solubility by more than 30 times compared to its pure form.     

Synthesis, crystal structures, and properties of [Ca(H2O)2(Dmf@CB[6])(Bdc)] · DMF · 4H2O and [Ca(H2O)3(Dmf@CB[6])]Cl2 · 2H2O

Complexes [Ca(H₂O)₂(Dmf@CB[6])(Bdc)] · DMF · 4H₂O (I) and [Ca(H₂O)₃(Dmf@CB[6])]Cl₂ · 2H₂O (II) are synthesized by the heating (95°C) of a mixture of calcium chloride and cucurbit[6]uril (CB[6]) in a mixture of dimethylformamide (DMF) and water with the addition of terephthalic acid (H₂Bdc) in the case of complex I or triethylamine for complex II. The compounds are characterized by X-ray diffraction analysis, IR spectroscopy, and thermogravimetric and elemental analyses. The luminescence spectra are also recorded. According to the X-ray diffraction data, the calcium atom is coordinated by the oxygen atoms of the cucurbit[6]uril molecule, water molecules, and terephthalate anion (for I). The internal cavity of the cavitand is occupied by DMF.     

Contribution to the Protonation of a Calix[4]arene: DFT Calculated Structure of Protonated <Emphasis Type="Italic">p-tert</Emphasis>-Butylcalix[4]arenetetrakis(<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-diethylacetamide)

Summary. By using DFT calculations, the most probable structure of the p-tert-butylcalix[4]arenetetrakis(N,N-diethylacetamide) · H₃O⁺ complex species was derived. In this complex, the hydroxonium ion H₃O⁺ is predominantly bound by strong hydrogen bonds to three phenoxy oxygens of the ligand and partly to the remaining phenoxy oxygen atom by two somewhat weaker hydrogen bonds. Besides, the H₃O⁺ cation is also bound to two carbonyl oxygens of the mentioned ligand by further two weaker hydrogen bonds.