Reactions of Beryllium Halides in Liquid Ammonia: The Tetraammineberyllium Cation [Be(NH3)4]2+, its Hydrolysis Products,and the Action of Be2+ as a Fluoride‐Ion Acceptor

The first structural characterization of the text‐book tetraammineberyllium(II) cation [Be(NH₃)₄]²⁺, obtained in the compounds [Be(NH₃)₄]₂Cl₄ ? 17NH₃ and [Be(NH₃)₄]Cl₂, is reported. Through NMR spectroscopic and quantum chemical studies, its hydrolysis products in liquid ammonia were identified. These are the dinuclear [Be₂(μ‐OH)(NH₃)₆]³⁺ and the cyclic [Be₂(μ‐OH)₂(NH₃)₄]²⁺ and [Be₃(μ‐OH)₃(NH₃)₆]³⁺ cations. The latter species was isolated as the compound [Be₃(μ‐OH)₃(NH₃)₆]Cl₃ ? 7NH₃. NMR analysis of solutions of BeF₂ in liquid ammonia showed that the [BeF₂(NH₃)₂] molecule was the only dissolved species. It acts as a strong fluoride‐ion acceptor and forms the [BeF₃(NH₃)]^? anion in the compound [N₂H₇][BeF₃(NH₃)]. The compounds presented herein were characterized by single‐crystal X‐ray structure analysis, ⁹Be, ¹⁷O, and ¹⁹F NMR, IR, and Raman spectroscopy, deuteration studies, and quantum chemical calculations. The extension of beryllium chemistry to the ammine system shows similarities but also decisive differences to the aquo system.     

Polymorphism of N,N'-diacetylbiuret studied by solid-state 13C and 15N NMR spectroscopy, DFT calculations, and X-ray diffraction

The molecular configuration and crystal structure of solid polycrystalline N,N′′‐diacetylbiuret (DAB), a potential nitrogen‐rich fertilizer, have been analyzed by a combination of solid‐ and liquid‐state NMR spectroscopy, X‐ray diffraction, and DFT calculations. Initially a pure NMR study (“NMR crystallography”) was performed as available single crystals of DAB were not suitable for X‐ray diffraction. Solid‐state ¹³C NMR spectra revealed the unexpected existence of two polymorphic modifications (α‐ and β‐DAB) obtained from different chemical procedures. Several NMR techniques were applied for a thorough characterization of the molecular system, revealing chemical shift anisotropy (CSA) tensors of selected nuclei in the solid state, chemical shifts in the liquid state, and molecular dynamics in the solid state. Dynamic NMR spectroscopy of DAB in solution revealed exchange between two different configurations, which raised the question, is there a correlation between the two different configurations found in solution and the two polymorphic modifications found in the solid state? By using this knowledge, a new crystallization protocol was devised which led to the growth of single crystals suitable for X‐ray diffraction. The X‐ray data showed that the same symmetric configuration is present in both polymorphic modifications, but the packing patterns in the crystals are different. In both cases hydrogen bonds lead to the formation of planes of DAB molecules. Additional symmetry elements, a two‐fold screw in the case of α‐DAB and a c‐glide plane in the case of β‐DAB, lead to a more symmetric (α‐DAB) or asymmetric (β‐DAB) intermolecular hydrogen‐bonding pattern for each molecule.     

Synthesis, solid-state structure, and bonding analysis of the beryllocenes [Be(C5Me4H)2], [Be(C5Me5)2], and [Be(C5Me5)(C5Me4H)

The beryllocenes [Be(C(5)Me(4)H)(2)] (1), [Be(C(5)Me(5))(2)] (2), and [Be(C(5)Me(5))(C(5)Me(4)H)] (3) have been prepared from BeCl(2) and the appropriate KCp' reagent in toluene/diethyl ether solvent mixtures. The synthesis of 1 is facile (20 degrees C, overnight), but generation of decamethylberyllocene 2 demands high temperatures (ca. 115 degrees C) and extended reaction times (3-4 days). The mixed-ring beryllocene 3 is obtained when the known [(eta(5)-C(5)Me(5))BeCl] is allowed to react with K[C(5)Me(4)H], once more under somewhat forcing conditions (115 degrees C, 36 h). The structures of the three metallocenes have been determined by low-temperature X-ray studies. Both 1 and 3 present eta5/eta1 geometries of the slip-sandwich type, whereas 2 exhibits an almost regular, ferrocene-like, sandwich structure. In the mixed-ring compound 3, C(5)Me(5) is centrally bound to beryllium and the eta(1)-C(5)Me(4)H ring bonds to the metal through the unique CH carbon atom. This is also the binding mode of the eta(1)-ring of 1. To analyze the nature of the bonding in these molecules, theoretical calculations at different levels of theory have been performed on compounds 2 and 3, and a comparison with the bonding in [Be(C(5)H(5))(2)] has been made. As for the latter molecule, energy differences between the eta5/eta5 and the eta5/eta1 structures of 2 are very small, being of the order of a few kcal mol(-1). Constrained space orbital variations (CSOV) calculations show that the covalent character in the bonding is larger for [Be(C(5)Me(5))(2)] than for [Be(C(5)H(5))(2)] due to larger charge delocalization and to increased polarizability of the C(5)Me(5) fragment.     

Electronic Structure,Chemical Bonding,and Solid‐State NMR Spectroscopy of the Digallides of Ca,Sr, and Ba

Delving into digallides : The characteristics of the chemical bonding of the digallides of the alkaline‐earth metals (see figure) have been studied by application of experimental methods, such as single‐crystal X‐ray diffraction and solid‐state NMR spectroscopy, in combination with quantum mechanical calculations.

     

Understanding sterol-membrane interactions, part II: complete 1H and 13C assignments by solid-state NMR spectroscopy and determination of the hydrogen-bonding partners of cholesterol in a lipid bilayer

The complete assignment of cholesterol 1H and 13C NMR resonances in a lipid bilayer environment (Lalpha-dimyristoylphosphatidylcholine/cholesterol 2:1) has been obtained by a combination of 1D and 2D MAS NMR experiments: 13C spectral editing, ge-HSQC, dipolar HETCOR and J-based HETCOR. Specific chemical shift variations have been observed for the C1-C6 atoms of cholesterol measured in CCl4 solution and in the membrane. Based on previous work (F. Jolibois, O. Soubias, V. Reat, A. Milon, Chem. Eur. J. 2004, 10, preceding paper in this issue: DOI: 10.1002/chem.200400245) these variations were attributed to local changes around the cholesterol hydroxy group, such as the three major rotameric states of the C3-O3 bond and different hydrogen bonding partners (water molecules, carboxy and phosphodiester groups of phosphatidylcholine). Comparison of the experimental and theoretical chemical shifts obtained from quantum-chemistry calculations of various transient molecular complexes has allowed the distributions of hydrogen bonding partners and hydroxy rotameric states to be determined. This is the first time that the probability of hydrogen bonding occurring between cholesterol's hydroxy group and phosphatidylcholine's phosphodiester has been determined experimentally.     

Unmasking melon by a complementary approach employing electron diffraction, solid-state NMR spectroscopy, and theoretical calculations-structural characterization of a carbon nitride polymer

Poly(aminoimino)heptazine, otherwise known as Liebig's melon, whose composition and structure has been subject to multitudinous speculations, was synthesized from melamine at 630 degrees C under the pressure of ammonia. Electron diffraction, solid-state NMR spectroscopy, and theoretical calculations revealed that the nanocrystalline material exhibits domains well-ordered in two dimensions, thereby allowing the structure solution in projection by electron diffraction. Melon ([C(6)N(7)(NH(2))(NH)](n), plane group p2 gg, a=16.7, b=12.4 A, gamma=90 degrees, Z=4), is composed of layers made up from infinite 1D chains of NH-bridged melem (C(6)N(7)(NH(2))(3)) monomers. The strands adopt a zigzag-type geometry and are tightly linked by hydrogen bonds to give a 2D planar array. The inter-layer distance was determined to be 3.2 A from X-ray powder diffraction. The presence of heptazine building blocks, as well as NH and NH(2) groups was confirmed by (13)C and (15)N solid-state NMR spectroscopy using (15)N-labeled melon. The degree of condensation of the heptazine core was further substantiated by a (15)N direct excitation measurement. Magnetization exchange observed between all (15)N nuclei using a fp-RFDR experiment, together with the CP-MAS data and elemental analysis, suggests that the sample is mainly homogeneous in terms of its basic composition and molecular building blocks. Semiempirical, force field, and DFT/plane wave calculations under periodic boundary conditions corroborate the structure model obtained by electron diffraction. The overall planarity of the layers is confirmed and a good agreement is obtained between the experimental and calculated NMR chemical shift parameters. The polymeric character and thermal stability of melon might render this polymer a pre-stage of g-C(3)N(4) and portend its use as a promising inert material for a variety of applications in materials and surface science.     

Magneto-structural characterization of metallocene-bridged nitronyl nitroxide diradicals by X-Ray, magnetic measurements, solid-state NMR spectroscopy, and ab initio calculations

Crystallization of ferrocene and ruthenocene substituted in the 1- and 1'-positions by two nitronyl nitroxide radicals gave the new crystal phases beta-1 (besides the known phase alpha-1), alpha-2, and beta-2 whose structures were determined by X-ray analysis. In beta-1 the radical moieties adopt transoid positions, whereas two different cisoid conformations are adopted by alpha-2 and beta-2. These conformations result from inter- and intramolecular hydrogen bonds, respectively. All compounds experience antiferromagnetic interactions, and J/k(B) values up to -7 K have been found by fitting the experimental magnetic susceptibilities to a modified Bleaney-Bowers equation. The solid diradicals alpha-1, beta-1, alpha-2, and beta-2 as well as the ferrocene 3, which was substituted by a unique nitronyl nitroxide, were investigated by (13)C and (1)H NMR spectroscopy with magic angle spinning. The carbon signals cover a range of 2000 ppm, and are well resolved such that the structure could be confirmed. Conversion of the signal shifts into spin densities disclosed the mechanisms by which spin delocalization from the nitronyl nitroxide substituents to the metallocene core occurs. The spin density distribution in alpha-1, beta-1, and 3 was also predicted by DFT calculations. There is good agreement between the experimental and theoretical trends of the spin delocalization. The magnetic interactions were discussed in the light of intramolecular spin transfer and its dependence on geometric constraints, demonstrating that the 1,1'-metallocenylene bridge is not a robust magnetic coupler.     

Computational Prediction of 1H and 13C NMR Chemical Shifts for Protonated Alkylpyrroles: Electron Correlation and Not Solvation is the Salvation

Prediction of chemical shifts in organic cations is known to be a challenge. In this article we meet this challenge for α-protonated alkylpyrroles, a class of compounds not yet studied in this context, and present a combined experimental and theoretical study of the ¹³C and ¹H chemical shifts in three selected pyrroles. We have investigated the importance of the solvation model, basis set, and quantum chemical method with the goal of developing a simple computational protocol, which allows prediction of ¹³C and ¹H chemical shifts with sufficient accuracy for identifying such compounds in mixtures. We find that density functional theory with the B3LYP functional is not sufficient for reproducing all ¹³C chemical shifts, whereas already the simplest correlated wave function model, Møller–Plesset perturbation theory (MP2), leads to almost perfect agreement with the experimental data. Treatment of solvent effects generally improves the agreement with experiment to some extent and can in most cases be accomplished by a simple polarizable continuum model. The only exception is the NH proton, which requires inclusion of explicit solvent molecules in the calculation.     

The Silicides M4Si4 with M = Na,K, Rb,Cs, and Ba2Si4 – NMR Spectroscopy and Quantum Mechanical Calculations

The Zintl phases M₄Si₄ with M = Na, K, Rb, Cs, and Ba₂Si₄ feature a common structural unit, the Si₄^4– anion. The coordination of the anions by the cations varies significantly. This allows a systematic investigation of the bonding situation of the anions by ²⁹Si NMR spectroscopy. The compounds were characterized by powder X‐ray diffraction, differential thermal analysis, magnetic susceptibility measurements, ²³Na, ²⁹Si, ⁸⁷Rb, ¹³³Cs NMR spectroscopy, and quantum mechanical calculation of the NMR coupling parameter. The chemical bonding was investigated by quantum mechanical calculations of the electron localizability indicator (ELI). Synthesis of the compounds results for all of them in single phase material. A systematic increase of the isotropic ²⁹Si NMR signal shift with increasing atomic number of the cations is observed by NMR experiments and quantum mechanical calculation of the NMR coupling parameter. The agreement of experimental and theoretical results is very good allowing an unambiguous assignment of the NMR signals to the atomic sites. Quantum mechanical modelling of the NMR shift parameter indicates a dominant influence of the cations on the isotropic ²⁹Si NMR signal shift. In contrast to this a negligible influence of the geometry of the anions on the NMR signal shift is obtained by these model calculations. The origin of the systematic variation of the isotropic NMR signal shift is not yet clear although an influence of the charge transfer estimated by calculation using the QTAIM approach is indicated.     

Understanding sterol-membrane interactions part I: Hartree-Fock versus DFT calculations of 13C and 1H NMR isotropic chemical shifts of sterols in solution and analysis of hydrogen-bonding effects

1H and 13C NMR chemical shifts are exquisitely sensitive probes of the local environment of the corresponding nuclei. Ultimately, direct determination of the chemical shifts of sterols in their membrane environment has the potential to reveal their molecular interactions and dynamics, in particular concerning the hydrogen-bonding partners of their OH groups. However, this strategy requires an accurate and efficient means to quantify the influence of the various interactions on chemical shielding. Herein the validity of Hartree-Fock and DFT calculations of the 13C and 1H NMR chemical shifts of cholesterol and ergosterol are compared with one another and with experimental chemical shifts measured in solution at 500 MHz. A computational strategy (definition of basis set, simpler molecular models for the sterols themselves and their molecular complexes) is proposed and compared with experimental data in solution. It is shown in particular that the effects of hydrogen bonding with various functional groups (water as a hydrogen-bond donor and acceptor, acetone) on NMR chemical shifts in CDCl3 solution can be accurately reproduced with this computational approach.     

NMR Crystallography Enhanced by Quantum Chemical Calculations and Liquid State NMR Spectroscopy for the Investigation of Se-NHC Adducts**

N-heterocyclic carbene ligands (NHC) are widely utilized in catalysis and material science. They are characterized by their steric and electronic properties. Steric properties are usually quantified on the basis of their static structure, which can be determined by X-ray diffraction. The electronic properties are estimated in the liquid state; for example, via the ⁷⁷Se liquid state NMR of Se-NHC adducts. We demonstrate that ⁷⁷Se NMR crystallography can contribute to the characterization of the structural and electronic properties of NHC in solid and liquid states. Selected Se-NHC adducts are investigated via ⁷⁷Se solid state NMR and X-ray crystallography, supported by quantum chemical calculations. This investigation reveals a correlation between the molecular structure of adducts and NMR parameters, including not only isotropic chemical shifts but also the other chemical shift tensor components. Afterwards, the liquid state ⁷⁷Se NMR data is presented and interpreted in terms of the quantum chemistry modelling. The discrepancy between the structural and electronic properties, and in particular the π-accepting abilities of adducts in the solid and liquid states is discussed. Finally, the ¹³C isotropic chemical shift from the liquid state NMR and the ¹³C tensor components are also discussed, and compared with their ⁷⁷Se counterparts. ⁷⁷Se NMR crystallography can deliver valuable information about NHC ligands, and together with liquid state ⁷⁷Se NMR can provide an in-depth outlook on the properties of NHC ligands.     

The Zintl Phase Cs7NaSi8 – From NMR Signal Line Shape Analysis and Quantum Mechanical Calculations to Chemical Bonding

Powder samples as well as red and transparent single crystals of the Zintl phase Cs₇NaSi₈ were synthesized and characterized by means of X‐ray diffraction and differential thermal analysis. Cs₇NaSi₈ was found to be isotypic to the recently reported phase Rb₇NaSi₈. It crystallizes in the Rb₇NaGe₈ structure type forming trigonal pyramidal Si₄^4– anions. Two unique environments of the cations are observed, a linear arrangement [Na(Si₄)₂]^7– with short Na–Si distances of 3.0 Å and a Cs2 atom coordinated by six Si₄^4– anions with long Cs–Si distances of 4.2 Å. The bonding situation was investigated by a combined application of ²⁹Si, ²³Na, and ¹³³Cs solid‐state NMR spectroscopy and quantum mechanical calculations of the NMR coupling parameters. In addition the electronic density of states (DOS), the electron localizability indicator (ELI) and the atomic charges using the QTAIM approach were studied. Good agreement of the calculated and experimental values of the NMR coupling parameters was obtained. An anisotropic bonding situation of the silicon atoms is indicated by the chemical shift anisotropy being similar to Rb₇NaSi₈. Confirmation is given by the observation of one lone‐pair‐like feature for each silicon atom and two types of two‐center Si–Si bonds using the ELI. Calculation and NMR spectroscopic determination of the ²³Na and ¹³³Cs electric field gradients prove anisotropies of the charge distribution around the cations. Due to the similar values for the Na atoms in M₇NaSi₈ (M = Rb, Cs) equal bonding situations can be concluded. The much larger anisotropy of the charge distribution of the Cs atoms can be addressed as the main difference to Rb₇NaSi₈.     

Chemical Bonding and Electronic Localization in a GaI Amide

The electron density in a one‐coordinate [Ga^IN(SiMe₃)R] complex has been determined from ab initio calculations and multipole modeling of 90 K X‐ray data. The topologies of the Laplacian distribution and the ELI‐D match a situation having an sp³‐hybridized nitrogen with a tetrahedral arrangement of two single σ‐bonds (to carbon and silicon) and two lone pairs pointing towards gallium in a scissor‐grasping fashion. The analysis of the Laplacian distribution furthermore reveals a ligand‐induced charge concentration (LICC) in the outer core of gallium oriented directly towards the nitrogen atom, and thus in between the two lone pairs. These observations might suggest that the trigonal planar nitrogen geometry result from a dative Ga?N bond, in which the roles of the metal and the ligand have been reversed with respect to a “standard” metal–ligand interaction, that is, the metal is here electron‐donating. The ELI‐D reveals a diffuse and directional lone pair on gallium, suggesting that this complex could serve as a σ‐donor.