Ab initio DFT investigations on structure of copper(I) bis-diazine complexes

Supramolecular self-assembling processes of nitrogen bidendated heterocycles are fundamental for the understanding of rules which predestine to their spontaneous formation. In our approach ab initio DFT method has been used to resolve six Cu(I) complexes. The collected data show that only four structures converged into a quasi-tetrahedral [L₂Cu][BF₄] geometry. A special feature in case of the [(bpy–bpz)₂Cu][BF₄] hetero-complex, not observed in case of the corresponding Cu(I) homo-complexes, is the increased participation of p orbitals of the Cu⁺ to the HOMO.     

New coordination modes of iminodiacetamide type ligands in palladium(II) complexes: crystallographic and DFT studies

The reactions of N-alkyliminodiacetamide derivatives, namely N-ethyliminodiacetamide (CH₃CH₂N(CH₂CONH₂)₂; Etimda) and N-isopropyliminodiacetamide (CH₃)₂CHN(CH₂CONH₂)₂; i-Primda), with sodium tetrachloropalladate(II) in aqueous solutions were investigated. Three new palladium(II) complexes, [Pd(Etimda_?H)₂]?2H₂O (1), [Pd(i-Primda_?H)₂]?2H₂O (2) and [PdCl₂(i-Primda)] (3), were obtained and characterized by X-ray structural analysis, infrared spectroscopy and thermal analysis (TGA). The square planar coordination environments around the palladium(II) ions in complexes 1 and 2 consist of two N,N′-bidentate N-alkyliminodiacetamidato ligands, with imino N atoms in trans-position. The complex 3 also exhibits a square planar coordination environment around Pd(II), but with two chloride ions and one neutral N-isopropyliminodiacetamide ligand bound in an N,O′-bidentate coordination mode. The described coordination modes, as well as the presence of deprotonated amide groups in ligands in 1 and 2, are found for the first time in palladium(II) complexes with iminodiacetamide type ligands. The molecular geometries and infrared spectra of these three complexes were also modelled using DFT calculations, at the BP86-D3/def2-TZVPP/PCM level of theory. The RMSD values suggest a good agreement of the calculated and experimental geometries. A QTAIM analysis suggests a qualitative correlation between bond lengths and energy densities, also supported by an NBO analysis. The dimer interaction energy between complex units was estimated at about ?15 kcal/mol for all complexes.     

Ruthenium agostic (phosphinoaryl)borane complexes: multinuclear solid-state and solution NMR, X-ray, and DFT studies

The reactivity of the (o-phosphinophenyl)(amino)borane compound HB(N(i)Pr(2))C(6)H(4)(o-PPh(2)) prepared from Li(C(6)H(4))PPh(2) and HBCl(N(i)Pr(2)) toward the bis(dihydrogen) complex RuH(2)(H(2))(2)(PCy(3))(2) (1) was studied by a combination of DFT, X-ray, and multinuclear NMR techniques including solid-state NMR, a technique rarely employed in organometallic chemistry. The study showed that the complex RuH(2){HB(N(i)Pr(2))C(6)H(4)(o-PPh(2))}(PCy(3))(2) (3), isolated in excellent yield as yellow crystals and characterized by X-ray diffraction, led in solution to PCy(3) dissociation and formation of an unsaturated 16-electron complex RuH(2){HB(N(i)Pr(2))C(6)H(4)(o-PPh(2))}(PCy(3)) (4), with a hydride trans to a vacant site. In both cases, the (phosphinoaryl)(amino)borane acts as a bifunctional ligand through the phosphine moiety and a Ru-H-B interaction, thus featuring an agostic interaction.     

Novel rhenium(III) complexes with the picolinate ligand: Synthesis,spectroscopic investigations,X-ray structures and DFT calculations for [ReX2(pic)(PPh3)2] complexes

The paper presents a combined experimental and computational study of novel rhenium(III) complexes with the picolinate ligand – [ReCl₂(pic)(PPh₃)₂] (1) and [ReBr₂(pic)(PPh₃)₂] (2). Both complexes 1 and 2 have been characterised spectroscopically and structurally (by single-crystal X-ray diffraction). Complex 1 has been additionally studied by magnetic measurement. The magnetic behavior is characteristic of a mononuclear d⁴ low-spin octahedral Re(III) complex (³T_1g ground state) and arises because of the large spin–orbit coupling (ζ = 2500 cm⁻¹), which gives a diamagnetic ground state. DFT and time-dependent (TD)DFT calculations have been carried out for complex 1, and UV–vis spectra of the [ReX₂(pic)(PPh₃)₂] compounds have been discussed on this basis.     

Ab initio/DFT electronic structure calculations, spectroscopic studies and normal coordinate analysis of 2-chloro-5-bromopyridine

FT-IR (4000-400 cm(-1)) and FT-Raman (3500-50 cm(-1)) spectral measurements of solid sample of 2-chloro-5-bromopyridine have been done. Ab initio and DFT calculations have been performed giving energies, optimized structures, harmonic vibrational frequencies, depolarization ratios, IR intensities, Raman activities and atomic displacements. Furthermore, force field calculations have been performed by normal coordinate analysis. A complete assignment of the observed spectra, based on spectral correlations, electronic structure calculations and normal coordinate analysis, has been proposed. The results of the calculations have been used to simulate IR and Raman spectra for the molecule that showed good agreement with the observed spectra. The SQM method, which implies multiple scaling of the DFT force fields, has been shown superior to the uniform scaling approach. The energy and oscillator strength calculated by Time-dependent DFT results are in good agreement with the experimental results.     

Coordination chemistry of di-2-pyridylketone. Synthesis, spectroscopic investigations, X-ray studies and DFT calculations of Re(III) and Re(V) complexes

The paper presents a combined experimental and computational study of Re(III) and Re(V) complexes containing di-2-pyridylketone and its gem-diol form – [ReCl₃(dpk-N,O)(PPh₃)] (1), [ReCl₃(dpk-N,N′)(OPPh₃)] (2) and [ReOBr₃(dpk-OH)]·2(dpkH⁺Br⁻) (3). All the complexes have been characterized spectroscopically and structurally (by single-crystal X-ray diffraction). The complex 2 has been additionally studied by magnetic measurement. The magnetic behavior of 2 is characteristic of mononuclear octahedral Re(III) complex with d⁴ low-spin (³T_1g ground state) and arise because of the large spin–orbit coupling (ζ = 2500 cm⁻¹), which gives diamagnetic ground state. DFT and time-dependent (TD)DFT calculations have been carried out for [ReCl₃(dpk-N,N′)(OPPh₃)] and [ReOBr₃(dpk-OH), and their UV–vis spectra have been discussed on this basis.     

Ab initio and DFT studies on vibrational spectra of some mixed carbonyl-halide complexes of ruthenium(II)

The vibrational spectra of Ru(CO)6(2+) and some of its mixed carbonyl-halide complexes, cis-Ru(CO)2X4(2-), fac-Ru(CO)3X3- and Ru(CO)5X+ (X = F, Cl, Br and I), have been systematically investigated by ab initio RHF and density functional B3LYP methods with LanL2DZ and SDD basis sets. The calculated vibrational frequencies of complexes Ru(CO)6(2+), cis-Ru(CO)2X4(2-) and fac-Ru(CO)3X3- are evaluated via comparison with the experimental values. In the infrared frequency region, the C-O stretching vibrational frequencies calculated at B3LYP level with two basis sets are in good agreement with the observed values with deviations less than 5%. In the far-infrared region, the B3LYP/SDD method achieved the best results with deviations less than 8% for Ru-X stretching and less than 2% for Ru-C stretching vibrational frequencies. The vibrational frequencies for Ru(CO)5X+ that have not been experimentally reported were predicted.     

Molecular structures of THF-solvated alkali-metal 2,2,6,6-tetramethylpiperidides finally revealed: X-ray crystallographic, DFT, and NMR (including DOSY) spectroscopic studies

The often studied THF solvates of the utility alkali-metal amides lithium and sodium 2,2,6,6-tetramethylpiperidide are shown to exist in the solid state as asymmetric cyclic dimers containing a central M(2)N(2) ring and one molecule of donor per metal to give a distorted trigonal planar metal coordination. DFT studies support these structures and confirm the asymmetry in the ring. In C(6)D(12) solution, the lithium amide displays a concentration-dependent equilibrium between a solvated and unsolvated species which have been shown by diffusion-ordered NMR spectroscopy (DOSY) to be a dimer and larger oligomer, respectively. A third species, a solvated monomer, is also present in very low concentration, as proven by spiking the NMR sample with THF. In contrast, the sodium amide displays a far simpler C(6)D(12) solution chemistry, consistent with the solid-state dimeric arrangement but with labile THF ligands.     

Novel thiocyanate complexes of cadmium(II) - Synthesis, spectroscopic characterization, X-ray studies and DFT calculations

Three novel thiocyanate cadmium(II) compounds [Cd(ind)₂(SCN)₂]_n (1), [Cd(dpa)Cl(SCN)]_n (2) and [Cd(terpy)(SCN)₂] (3) were synthesized and characterized by spectroscopic and crystallographic methods. Thiocyanate ions of 1 act as bridging ligands generating a one-dimensional chain constructed of Cd(SCN)₂Cd units and expanding along the crystallographic direction [1 0 0]. The Cd(II) ions of 2 are bridged by alternating di-μ-Cl and di-μ_1,3-NCS bridges to one-dimensional chain running along the crystallographic direction [0 1 0]. [Cd(terpy)(SCN)₂] (3) is a square pyramidal mononuclear compound.The fluorescence properties of the complexes 1 and 2 were examined in solid state, whereas fluorescence spectra of 3 were recorded in both solid state and solution. All they were compared with the fluorescence properties of the free ligands. Additionally, the electronic spectrum of 3 were investigated at the TDDFT level employing B3LYP functional in combination with LANL2DZ.     

Structure, bonding, and reactivity of Ti and Zr amidate complexes: DFT and X-ray crystallographic studies

Easily prepared and highly modular organic amide proligands have been used to synthesize a series of new bis(amidate)-bis(amido) Ti and Zr complexes via protonolysis. These complexes have been structurally characterized by NMR spectroscopy and X-ray crystallography. The solid-state molecular structures of these complexes indicate that the amidate ligands bind to the metal centers in an exclusively bidentate fashion, resulting in discrete monomeric species. Geometric isomerism in these species is highly dependent upon the steric characteristics of the proligands utilized in the synthesis. In solution, these complexes are observed to isomerize on the NMR time scale, with one isomer being predominant. Bonding in the bis(amidate)-bis(amido) complexes was investigated by DFT calculations. The geometric isomers predicted by theory matched the experimentally observed results, within experimental error. The orbitals associated with amidate-metal bonding are energetically well below the frontier orbitals. The HOMO in these complexes is a pi orbital associated with amido ligand-to-metal bonding character, while the LUMO in all cases is a vacant d orbital on the metal center.     

Hydrogen-bonded complexes of nitrous and nitric acids with ethene Ab initio and DFT studies

The complexes formed by ethene with nitric and nitrous (trans and cis) acids have been investigated by ab initio (SCF and MP2) and B3LYP calculations with 6-311++G(d,p) basis set. Full geometry optimisation has been performed for the complexes studied. The most stable structures of the complexes are established. Bearing in mind the corrected values of the dissociation energy the studied hydrogen-bonded complexes can be ordered as follows: C(2)H(4)...HONO(2)>C(2)H(4)...HONO-trans>C(2)H(4)...HONO-cis. In the complexes the acids act as proton donors forming the pi-type of hydrogen bond with ethene. The predicted changes in the vibrational characteristics (vibrational frequencies and infrared intensities) arising from the hydrogen bonding are in good agreement with the experimentally measured. The predicted frequency shift of the stretching OH vibration in the nitric acid is largest (-210 cm(-1)), followed by the shifts in the trans-HONO (-141 cm(-1)) and cis-HONO (-109 cm(-1)). The calculations predict an increase of the IR intensity of the stretching O-H vibration in the complexes from 6 to 10 times.     

Ab initio/DFT and AIM studies on dual hydrogen-bonded complexes of 2-hydroxypyridine/2-pyridone tautomerism

The second-order M?ller-Plesset (MP2) and density functional theory (DFT) calculations have been carried out to investigate the structures and stabilities of hydrogen (H-) bonded 2-hydroxypyridine (2HP)/2-pyridone (2PY) dimeric forms as well as 2HP-2PY complexes. The results on single-point counterpoise (CP) correction of these complexes were compared against CP-optimized correction. The nature of the intermolecular contacts in the sense of normal H-bond or blue-shifting H-bond was determined on the basis of harmonic vibrational, atom-in-molecule (AIM), and natural bond orbital (NBO) analysis. A blue-shifting C-H...N H-bond was found and NBO analysis revealed a slight decrease in the population of the contacting sigmaC-H* antibonding orbital as the primary reason of the C-H contraction. Good correlations have been established between the interaction energies and the H-bond distances versus other characteristic H-bond parameters.     

fac-[Re(CO)(3)L](+) complexes with N-CH(2)-CH(2)-X-CH(2)-CH(2)-N tridentate ligands. synthetic, X-ray crystallographic, and NMR spectroscopic investigations

Polyamine ligands (L) have excellent binding characteristics for the formation of fac-99mTc(CO)3-based radiopharmaceuticals. Normally, these L are elaborated so as to leave pendant groups designed to impart useful biodistribution characteristics to the fac-[99mTc(CO)3L] imaging agent. Our goal is to lay a foundation for understanding the features of the bound elaborated ligands by using the fac-[Re(CO)3L]-analogue approach with the minimal prototypical ligands, diethylenetriamine (dien) or simple dien-related derivatives. Treatment of the fac-[Re(CO)3(H2O)3]+ cation with such triamine (NNN) ligands afforded fac-[Re(CO)3L]+ complexes. Ligand variations included having a central amine thioether donor, thus allowing X-ray crystallographic and NMR spectroscopic comparisons of fac-[Re(CO)3L]+ complexes with NNN and NSN ligands. fac-[Re(CO)3L]+ complexes with two terminal exo-NH groups exhibit unusually far upfield exo-NH NMR signals in DMSO-d6. Upon the addition of Cl-, these exo-NH signals move downfield, while the signals of any endo-NH or central NH groups move very little. This behavior is attributed to the formation of 1:1 ion pairs having selective Cl- hydrogen bonding to both exo-NH groups. Base addition to a DMSO-d6 solution of meso-exo-[Re(CO)3(N,N',N'-Me3dien)]PF6 led to isomerization of only one NHMe group, producing the chiral isomer. The meso isomer did not form. The [Re(CO)3(N,N,N',N',N'-pentamethyldiethylenetriamine)]triflate.[Re(CO)3(mu3-OH)]4.3.35H2O crystal, the first structure with a fac-[Re(CO)3L] complex cocrystallized with this well-known cluster, provided parameters for a bulky NNN ligand and also reveals CO-CO interlocking intermolecular interactions that could stabilize the crystal.     

Novel p-tolylimido rhenium(V) complexes of imidazole-derived ligand - Synthesis, X-ray studies, spectroscopic characterization and DFT calculations

Three novel imido rhenium complexes of biologically relevant ligand 2-hydroxymethylbenzimidazole: [Re(p-NC₆H₄CH₃)Cl₂(hmbzim)(PPh₃)]·CHCl₃ (1), [Re(p-NC₆H₄CH₃)Br₂(hmbzim)(PPh₃)] (2) and [Re(p-NC₆H₄CH₃)(hmbzim)₂(PPh₃)]ReO₄·MeOH (3) have been synthesized and characterized spectroscopically and structurally (by single-crystal X-ray diffraction). The electronic spectra of 1 and 3 were investigated at the TDDFT level employing B3LYP functional in combination with LANL2DZ. Additional information about binding in the complexes 1 and 3 was obtained by NBO analysis, which confirms a linear coordination mode of the p-NC₆H₄CH₃ ligand and triple bond between the rhenium and imido ligand.     

Synthesis, X-ray studies, spectroscopic characterization and DFT calculations of p-tolylimido rhenium(V) complexes bearing an imidazole-based ligand

Novel p-tolylimido rhenium(V) complexes [Re(p-NC₆H₄CH₃)X₂(hpb)(PPh₃)] and [Re(p-NC₆H₄CH₃)(hpb)₂(PPh₃)]X (X = Cl, Br) have been obtained in the reactions of [Re(p-NC₆H₄CH₃)X₃(PPh₃)₂] with 2-(2-hydroxyphenyl)-1H-benzimidazole (Hhpb). The compounds were identified by elemental analysis IR, UV-Vis spectroscopy and X-ray crystallography. The electronic structures of the complex [Re(p-NC₆H₄CH₃)Cl₂(hpb)(PPh₃)] and the cation [Re(p-NC₆H₄CH₃)(hpb)₂(PPh₃)]⁺ have been calculated with the density functional theory (DFT) method. Additional information about binding in the [Re(p-NC₆H₄CH₃)Cl₂(hpb)(PPh₃)] and [Re(p-NC₆H₄CH₃)(hpb)₂(PPh₃)]⁺ has been obtained by NBO analysis. The electronic spectra of [Re(p-NC₆H₄CH₃)Cl₂(hpb)(PPh₃)] and [Re(p-NC₆H₄CH₃)(hpb)₂(PPh₃)]Cl were investigated at the TDDFT level employing B3LYP functional in combination with LANL2DZ.     

Ab initio and DFT studies on van der Waals trimers: the OCS.(CO2)2 complexes

Ab initio calculations [MP2, MP4SDTQ, and QCISD(T)] using different basis sets [6-31G(d,p), cc-pVXZ (X = D, T, Q), and aug-cc-pVDZ] and density functional theory [B3LYP/6-31G(d,p)] calculations were carried out to study the OCS.(CO2)2 van der Waals trimer. The DFT has proved inappropriate to the study of this type of systems where the dispersion forces are expected to play a relevant role. Three minima isomers (two noncyclic and one cyclic) were located and characterized. The most stable isomer exhibits a noncyclic barrel-like structure whose bond lengths, angles, rotational constants, and dipole moment agree quite well with the corresponding experimental values of the only structure observed in recent microwave spectroscopic studies. The energetic proximity of the three isomers, with stabilization energies of 1442, 1371, and 1307 cm-1, respectively, at the CBS-MP2/cc-pVXZ (X = D, T, Q) level, strongly suggests that the two unobserved structures should also be detected as in the case of the (CO2)3 trimer where both noncyclic and cyclic isomers have been reported to exist. The many-body symmetry-adapted perturbation theory is employed to analyze the nature of the interactions leading to the formation of the different structures. The three-body contributions are small and stabilizing for the two most stable structures and almost negligible for the cyclic isomer.     

Comparative study of kinetics isomerization of substituted polyacetylene (Cl,F and I): Ab initio and DFT calculations

Ab initio and DFT methods were used to investigate the interconversions of substituted polyacetylene conformers C₁₀H₆X₆ (X=F, Cl and I) in the vapour phase. The rates of this geometrical isomerization have been calculated and the Arrhenius parameters evaluated. In the case of unsubstituted polyacetylene as the reference, the B3LYP Arrhenius parameters obtained are A₁=2.99 × 10¹⁷ s^–1 and E_a=17.30 kcal mol^–1. The values of the equilibrium constant for the reaction have also been determined at various temperatures between 300 and 500 K and the value of the energies change calculated. The results also suggest that the straightforward kinetics characterizing the majority of substituted polyacetylene isomerizations above 300 K. The isomerization energies are positive and the barrier heights ΔE_barrier are expected to be sensitive for the magnitude of halogens effects. According to geometries features the Cis → Trans isomerization in the gas phase occurs by a rotational mechanism.     

Spectroscopic,structure and DFT studies of palladium(II) complexes with pyridine-type ligands

Five palladium(II) complexes with pyridine derivative ligands have been synthesized. The molecular structures of the complexes were determined by X-ray crystallography, and their spectroscopic properties were studied. Based on the crystal structures, computational investigations were carried out in order to determine the electronic structures of the complexes. The electronic spectra were calculated with the use of time-dependent DFT methods, and the electronic spectra of the transitions were correlated with the molecular orbitals of the complexes. The emission properties of the complexes have been examined.     

Tautomerism and stereochemistry of hypericin: Force field,NMR, and X-ray crystallographic investigations

Summary Stereochemistry and tautomerism of hypericin, pseudohypericin, and several of their partial structure models were investigated using an MM2 derived force field method. Besides the propeller type conformer, which was also found by the X-ray crystallographic study, the complicated energy hypersurface was shown to contain a novel double-butterfly conformer of similar stability. The upper limit interconversion barrier between these conformers and their enantiomers was found to be in the order of 115 kJ/mol.¹H-NMR experiments suggested a lower limit interconversion barrier of at least 80 kJ/mol. From the ten tautomers possible in principle, the 7,14-species was derived to be the most stable one by at least 48 kJ/mol.

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Tautomerie und Stereochemie von Hypericin: Untersuchungen mit Hilfe der Kraftfeld-Methodik, NMR-Spektroskopie und Röntgenstrukturanalyse

Zusammenfassung Die Stereochemie von Hypericin, Pseudohypericin und einigen seiner Partialstrukturmodelle wurde mit Hilfe einer von MM2 abgeleiteten Kraftfeldmethodik untersucht. In der komplizierten Energiehyperfläche wurde neben dem auch durch Röntgenstrukturanalyse gefundenen Propeller-Konformeren ein neues Doppelschmetterling-Konformer ähnlicher Stabilität aufgefunden. Die obere Grenze für die Interkonversionsbarrieren zwischen diesen Konformeren und ihren Enantiomeren sind in der Größenordnung von 115 kJ/mol. Aus¹H-NMR-Experimenten konnte eine untere Grenze von wenigstens 80 kJ/mol abgeleitet werden. Es wurde gefunden, daß von den zehn prinzipiell möglichen Tautomeren die 7,14-Spezies die um wenigstens 48 kJ/mol stabilste ist.