Interfacial hydrolysis in the mu-oxo dimer formation of tetraphenylporphinatomanganese(III) in the toluene/water system.

The interfacial adsorption and dimerization behavior of tetraphenylporphinatomanganese(III)chroride (Mn(TPP)Cl) in the toluene/water two phase system was studied. The absorption spectra of the porphyrin complex in the organic phase were blue shifted with increasing of pH in the aqueous phase, suggesting the formation of the mu-oxo dimer. The interfacial species in these systems were examined by means of UV/vis external reflection (ER) spectrophotometry. ER spectral maxima were also blue shifted with the increase in pH, whereas the shape of the ER spectra in the basic conditions was different from that of the mu-oxo dimer. The observed results suggest that the hydroxide-coordinated monomer, Mn(TPP)OH, was generated from the Mn(TPP)(H2O)+ at the interface under the basic conditions and that was further converted to the mu-oxo dimer, which was soluble into the toluene phase.     

碘化四(4-三甲胺苯基)卟啉铁(II)配合物的聚合及其轴向配位的研究

本文通过元素分析、磁化率、红外光谱、紫外可见光谱进一步确定了碘化四(4-三甲胺苯基)卟啉铁(III)配合物的组成和结构. PH滴定曲线证明它在不同PH水溶液中存在单体和二聚体平衡. 通过PH光度法求出在恒定离子强度下(μ=0.1FNaNO3)聚合物的聚合度、聚合平衡常数及其热力学参数. 用分光光度法测定了该二聚体与生物轴向配体(咪唑、1-甲咪唑、L-组氨酸及吡啶)反应平衡常数及热力学参数, 其配位能力大小顺序为:咪唑>1-甲基咪唑>L-组氨酸>吡啶. 还求出上述反应在水-二氧六圜混合溶剂中的平衡常数, 得出lgK与1/8呈线性关系(8为介电常数), 并对热力学参数进行了讨论.     

Factors influencing Al(3+)-dimer speciation and stability from density functional theory calculations

We have investigated aqueous Al-dimer complexes using density functional theory methods (e.g. the B3LYP exchange-correlation functional and the 6-311++G(d,p) basis set). In these calculations interactions between the Al(3+) cations and the H(2)O or OH(-) coordinating ligands are considered explicitly while the second hydration shell and remaining solvent are treated as a continuum under the IEF-PCM formalism. The Al-dimer chemical reactivity is discussed by analysis of changes in geometry, electronic structure and Gibbs free energy of formation, relative to two independent Al(H(2)O) monomers, as a function of water and hydroxide coordination. Our results indicate that the mechanism of cooperativity, i.e. decreased Al-water bond stability with increasing OH(-) coordination and increased water ligand hydrolysis as complex CN decreases, is operating on the dimer species and that, therefore, a wide variety of dimer species are available. While the stability of these species is observed to be dependent on the number of water and hydroxide ligands, the hydroxide bridging structure (singly, doubly and triply bridged species are considered) does not appear to correlate with dimer stability. Interestingly, intra-molecular H-bonds (in the form of the well known H(3)O bridge as well as two bridging structures, H(4)O(2) and H(2)O, that have not, to our knowledge, been previously considered) are observed to influence dimer stability. The evaluation of the equilibrium mole fraction of the dimer species in equilibrium with the aqueous Al(3+) monomer species of our previous study displays the qualitatively correct trend of solution composition as pH increases, namely monomeric aqueous Al(3+) and Al(OH) complexes dominate at low and high pH, respectively, and all remaining monomer and dimer species exist at intermediate pH. Further refinement of our data set by eliminating dimer complexes with OH/Al ratios greater than 2.6 brings our predicted equilibrium mole fraction distributions into excellent agreement with experimental observations. The triply bridged dimer is observed in low amounts while the singly and doubly bridged dimers dominate our model system at pH = ～4-7.     

Electrochemical and spectroscopic behavior of iron(III) porphyrazines in Langmuir-Schafer films

Thin films of a newly synthesized iron(III) porphyrazine, LFeOESPz ( L = ClEtO, OESPz = ethylsulfanylporphyrazine), have been deposited by the Langmuir-Schafer (LS) technique (horizontal lifting) on ITO or gold substrates. Before deposition, the floating films have been investigated at the air-water interface by pressure/area per molecule (pi/ A) experiments, Brewster angle microscopy (BAM) and UV-vis reflection spectroscopy (RefSpec). The complex reacts with water subphase (pH 6.2) forming the mu-oxo dimer, which becomes the predominant component of the LS films ( LS-Fe) as indicated by optical, IR, XPS, and electrochemical data. LS-Fe multilayers exhibit, between open circuit potential (OCP) and +0.90 V (vs SCE), two independent peak pairs with formal potentials, E surf (I) and E surf(II) of +0.56 V and +0.78 V, respectively. According to dynamic voltammetric and coulometric experiments the peak pair at +0.56 V is attributed to one-electron process at the iron(III) centers on the monomer, while the peak pair at +0.78 V is associated to a four-electron process involving mu-oxo-dimer oligomers. LS-Fe films prove to be quite stable electrochemically between OCP and +0.90 V. The electrochemical stability decreases, however, when the potential range is extended both anodically and cathodically outside these limits, due to formation of new species. Upon incubation with TCA solutions, LS-Fe films show remarkable changes in the UV-vis spectra, which are consistent with a significant mu-oxo dimer --> monomer conversion. Addition of TCA to the electrochemical cell using a LS-Fe film as working electrode, results in a linear increase of a cathodic current peak near -0.40 V as the TCA concentration varies in the 0.1-2.0 mM range. This behavior is interpreted in terms of TCA inducing a progressive change in the composition of the LS-Fe films in favor of the monomeric iron(III) porphyrazine, which is responsible for the observed increase in the cathodic current near -0.40 V.     

Formation and dissociation of rhodamine 800 dimers in water: steady-state and ultrafast spectroscopic study

We investigated the fundamental photophysics and photochemistry of a cationic dye rhodamine 800 (R800) in water using steady-state and ultrafast time-resolved spectroscopies. In the ground state, the monomer and dimer coexist in equilibrium, which causes significant concentration dependence of UV-visible (vis) absorption spectra. We determined the equilibrium constant as well as the molar absorption spectra of the monomer and dimer from a global fitting analysis of the UV-vis spectra. The obtained pure dimer spectrum indicates that it is a nonparallel H-dimer. In contrast to the absorption spectra, the steady-state fluorescence spectra do not show any noticeable concentration dependence. The fluorescence lifetime was determined as 0.73 ns regardless of the concentration, and the fluorescence of R800 in water was solely attributed to the monomer. In femtosecond time-resolved absorption measurements, we observed the S(n) <-- S1 absorption bands of the monomer and the dimer, as well as the ground-state bleaching signals. It was found that the S1 dimer dissociates to produce the S1 monomer (and the S0 monomer) or relaxes to the S0 dimer with a time constant of as short as 3.0 ps, which brings about the absence of dimer fluorescence.     

Magnetic exchange in [Mn2(mu-O)3(tmtacn)2]2+: metal-metal bonding or superexchange?

A computational study of the tris-mu-oxo-bridged manganese dimer [Mn2(mu-O)3(NH3)6]2+ as a model for [Mn2(mu-O)3(tmtacn)2]2+ (tmtacn = N',N",N"'-trimethyl-1,4,7-triazacyclononane) has been undertaken to investigate the magnetic coupling in this complex. Although the complex has a very short Mn--Mn distance, 2.3 A, and a large antiferromagnetic exchange constant, 2Jab = -780 cm(-1), the calculations reveal that the magnetic coupling is dominated by superexchange via the mu-oxo bridges and that direct Mn-Mn interaction is small.     

Effect of pH on one-electron oxidation chemistry of organoselenium compounds in aqueous solutions

Pulse radiolysis coupled with absorption detection has been employed to study one-electron oxidation of selenomethionine (SeM), selenocystine (SeCys), methyl selenocysteine (MeSeCys), and selenourea (SeU) in aqueous solutions. Hydroxyl radicals (*OH) in the pH range from 1 to 7 and specific one-electron oxidants Cl2*- (pH 1) and Br2*- (pH 7) have been used to carry out the oxidation reactions. The bimolecular rate constants for these reactions were reported to be in the range of 2 x 10(9) to 10 x 10(9) M(-1) s(-1). Reactions of oxidizing radicals with all these compounds produced selenium-centered radical cations. The structure and stability of the radical cation were found to depend mainly on the substituent and pH. SeM, at pH 7, produced a monomer radical cation (lambdamax approximately 380 nm), while at pH 1, a dimer radical cation was formed by the interaction between oxidized and parent SeM (lambdamax approximately 480 nm). Similarly, SeCys, at pH 7, on one-electron oxidation, produced a monomer radical cation (lambdamax approximately 460 nm), while at pH 1, the reaction produced a transient species with (lambdamax approximately 560 nm), which is also a monomer radical cation. MeSeCys on one-electron oxidation in the pH range from 1 to 7 produced monomer radical cations (lambdamax approximately 350 nm), while at pH < 0, the reaction produced dimer radical cations (lambdamax approximately 460 nm). SeU at all the pH ranges produced dimer radical cations (lambdamax approximately 410 nm). The association constants of the dimer radical cations of SeM, MeSeCys, and SeU were determined by following absorption changes at lambdamax as a function of concentration. From these studies it is concluded that formation of monomer and dimer radical cations mainly depends on the substitution, pH, and the heteroatoms like N and O. The availability of a lone pair on an N or O atom at the beta or gamma position results in monomer radical cations having intramolecular stabilization. When such a lone pair is not available, the monomer radical cation is converted into a dimer radical cation which acquires intermolecular stabilization by the other selenium atom. The pH dependency confirms the role of protonation on stabilization. The oxidation chemistry of these selenium compounds is compared with that of their sulfur analogues.     

PHOTO-CIDNP STUDY OF PYRIMIDINE DIMER SPLITTING II: REACTIONS INVOLVING PYRIMIDINE RADICAL ANION INTERMEDIATES

A series of photo-CIDNP (chemically induced dynamic nuclear polarization) experiments were performed on pyrimidine monomers and dimers, using the electron-donor Nα-acetyltryptophan (AcTrp) as a photosensitizer. The CIDNP spectra give evidence for the existence of both the dimer radical anion, which is formed by electron transfer from the excited AcTrp* to the dimer, and its dissociation product, the monomer radical anion. The AcTrp spectra are completely different from those obtained with an oxidizing sensitizer like anthraquinone-2-sulfonate, because of different unpaired electron spin density distributions in pyrimidine radical anion and cation. In the spectra of the anti (1,3-dimethyluracil) dimers, polarization is detected that originates from a spin-sorting process in the dimer radical pair, pointing to a relatively long lifetime of the dimer radical anions involved. Although the dimer radical anions of the 1,1′-trimethylene-bridged pyrimidines may have a relatively long lifetime as well, their protons have only very weak hyperfine interaction, which explains why no polarization originating from the dimer radical pair is detected. In the spectra of the bridged pyrimidines, polarized dimer protons are observed as a result of spin sorting in the monomer radical pair, from which it follows that the dissociation of dimer radical anion into monomer radical anion is reversible. A study of CIDNP intensities as a function of pH shows that a pH between 3 and 4 is optimal for observing monomer polarization that originates from spin-sorting in the monomer radical pair. At higher pH the geminate recombination polarization is partly cancelled by escape polarization arising in the same product.     

Beta-nitro derivatives of germanium(IV) corrolates

The reaction between germanium(IV) meso-triphenylcorrolates and nitrate salts affords the corresponding beta-nitro substituted corroles in good yield. Chromatographic separation of the crude reaction mixtures enables isolation of a mu-oxo dimer along with the corresponding monomers bearing a hydroxy or methoxy group at an axial position of the germanium central metal ion. Depending on the reaction conditions, mono- or dinitro substituted complexes can be obtained. The substitution is highly regioselective in each case, giving only the 3-nitro or 3,17-dinitro derivative among the different possible isomers. Five of the synthesized complexes were examined by cyclic voltammetry and UV-visible spectroelectrochemistry in dichloromethane, and the dinitro mu-oxo dimer is structurally characterized.     

A Supramolecular Chiral Auxiliary Approach: “Remote Control” of Stereochemistry at a Hierarchically Assembled Dimeric Helicate

Dimeric hierarchically‐assembled titanium(IV) helicates are in solvent‐dependent equilibrium with the corresponding monomers. Statistically formed mixtures of such complexes bearing chiral stereocontrolling ligands and achiral diene‐substituted ligands show high diastereoselectivity and reasonable enantioselectivity in the Diels–Alder reaction with maleimides if the reaction proceeds with the dimer but not with the monomer. Thus, solvent dependent switching between the monomer and dimer enables on/off switching of the enantioselectivity.     

Engineering an obligate domain-swapped dimer of cyanovirin-N with enhanced anti-HIV activity

The anti-HIV cyanobacterial protein cyanovirin-N can undergo domain swapping to form an intertwined dimer. The dimeric form is stable at low pH and millimolar concentrations. By deleting an amino acid from the hinge linker about which domain swapping occurs, we have constructed an obligate domain-swapped dimer of cyanovirin-N that represents a new tetravalent carbohydrate binding protein that is stable over a large range of pH values. This obligate dimer displays enhanced anti-HIV activity relative to the wild-type cyanovirin-N monomer with an observed 3.5-fold decrease in IC(50) (9nM for the dimer vs 32 nM for the monomer) for inhibition of HIV-1 envelope-mediated cell fusion and, when expressed in Escherichia coli, can be rapidly obtained in >98% purity in a single chromatographic step.     

Monomer–Dimer Control and Crystal Engineering in TASPs

We have reported a template assembled synthetic protein (cavitein Q4) as an unexpected dimer in the solid state and as a monomer–dimer equilibrium in solution. We have since reported an ability to bias a cavitein’s monomer–dimer equilibrium in solution by sequence design involving histidine metal chelation or disulfide incorporation. However, little remains known about the forces contributing to dimeric cavitein crystal nucleation and lattice stabilization. We, therefore, designed glutamine variants to probe factors involved in dimeric cavitein crystallization. It was found that a key glutamate hydrogen-bonding interaction between dimers is integral to crystal formation and stabilization. Additionally, we obtained a crystal structure of a cavitein (Q4-E3H) designed to bias the dimeric structure via histidine metal coordination. The resolved structure indicates a histidine cluster interaction that likely accounts for the biased dimeric form observed in solution.     

Nuclear Magnetic Resonance Study on Hydrogen Bonding of Butyl Alcohols

Nuclear magnetic resonance of hydroxyl proton of four butyl alcohols have been measured as a function of alcohol concentration in carbon tetrachloride solvent. Assuming equilibria among monomer, open-dimer and cyclic dimer for alcohol association, the chemical shifts of the hydroxyl proton both at the bonded state and at the non-bonded state and also the equilibrium constants were determined from the observation at a moderate dilution. The results were tabulated in Table 1 and shown in Fig. 1.     

Ligand effect on reversible conversion between copper(I) and bis(mu-oxo)dicopper(III) complex with a sterically hindered tetradentate tripodal ligand and monooxygenase activity of bis(mu-oxo)dicopper(III) complex

A new sterically hindered tetradentate tripodal ligand (Me2-etpy) and its labeled analogue having deuterated methylene groups (d4-Me2-etpy) were synthesized, where Me2-etpy is bis(6-methyl-2-pyridylmethyl)(2-pyridylethyl)amine. Copper(I) complexes [Cu(Me2-etpy or d4-Me2-etpy)]+ (1 and 1-d4, respectively) reacted with dioxygen at -80 degrees C in acetone to give bis(mu-oxo)dicopper(III) complexes [Cu2(O)2(Me2-etpy or d4-Me2-etpy)2](2+) (1-oxo and 1-d4-oxo, respectively), the latter of which was crystallographically characterized. Unlike a bis(mu-oxo)dicopper(III) complex with a closely related Me2-tpa ligand having a 2-pyridylmethyl pendant, 1-oxo possessing a 2-pyridylethyl pendant is not fully formed even under 1 atm of O2 at -80 degrees C and is very reactive toward the oxidation of the supporting ligand. Thermal decomposition of 1-oxo gave an N-dealkylated ligand in yield approximately 80% based on a dimer and a corresponding aldehyde. The deuterated ligand d4-Me2-etpy greatly stabilizes the bis(mu-oxo)dicopper(III) complex 1-d4-oxo, indicating that the rate determining step of the N-dealkylation is the C-H bond cleavage from the methylene group. The reversible conversion between 1-d4 and 1-d4-oxo in acetone is dependent on the temperature, and the thermodynamic parameters (DeltaH and DeltaS) of the equilibrium were determined to be -53 +/- 2 kJ mol(-1) and -187 +/- 10 J mol(-1) K(-1), respectively. The effect of the 2-pyridylethyl pendant in comparison with the 2-pyridylmethyl and 6-methyl-2-pyridylmethyl pendants on the physicochemical properties of the copper(I) and bis(mu-oxo)dicopper(III) species is discussed.     

Probing pH-dependent dissociation of HdeA dimers

HdeA protein is a small, ATP-independent, acid stress chaperone that undergoes a dimer-to-monomer transition in acidic environments. The HdeA monomer binds a broad range of proteins to prevent their acid-induced aggregation. To understand better HdeA's function and mechanism, we perform constant-pH molecular dynamics simulations (CPHMD) to elucidate the details of the HdeA dimer dissociation process. First the pK(a) values of all the acidic titratable groups in HdeA are obtained and reveal a large pK(a) shift only for Glu(37). However, the pH-dependent monomer charge exhibits a large shift from -4 at pH > 6 to +6 at pH = 2.5, suggesting that the dramatic change in charge on each monomer may drive dissociation. By combining the CPHMD approach with umbrella sampling, we demonstrate a significant stability decrease of the HdeA dimer when the environmental pH changes from 4.0 to 3.5 and identify the key acidic residue-lysine interactions responsible for the observed pH sensing in HdeA chaperon activity function.     

Accurate equilibrium structures obtained from gas-phase electron diffraction data: sodium chloride

A novel method has been developed to allow the accurate determination of equilibrium gas-phase structures from experimental data, thus allowing direct comparison with theory. This new method is illustrated through the example of sodium chloride vapor at 943 K. Using this approach the equilibrium structures of the monomer (NaCl) and the dimer (Na(2)Cl(2)), together with the fraction of vapor existing as dimer, have been determined by gas-phase electron diffraction supplemented with data from microwave spectroscopy and ab initio calculations. Root-mean-square amplitudes of vibration (u) and distance corrections (r(a) - r(e)) have been calculated explicitly from the ab initio potential-energy surfaces corresponding to the vibrational modes of the monomer and dimer. These u and (r(a) - r(e)) values essentially include all of the effects associated with large-amplitude modes of vibration and anharmonicity; using them we have been able to relate the ra distances from a gas-phase electron diffraction experiment directly to the re distances from ab initio calculations. Vibrational amplitudes and distance corrections are compared with those obtained by previous methods using both purely harmonic force fields and those including cubic anharmonic contributions, and the differences are discussed. The gas-phase equilibrium structural parameters are r(e)(Na-Cl)(monomer) = 236.0794(4) pm; r(e)(Na-Cl)(dimer) = 253.4(9) pm; and <(e)ClNaCl = 102.7(11) degrees. These results are found to be in good agreement with high-level ab initio calculations and are substantially more precise than those obtained in previous structural studies.     

Mn(II) and Cu(II) complexes of a dithiadiazolyl radical ligand: monomer/dimer equilibria in solution

Complexes of the 4-(2'-pyridyl)-1,2,3,5-dithiadiazolyl radical bidentate ligand with bis(hexafluoroacetylacetonato)manganese(II) and with bis(hexafluoroacetylacetonato)copper(II) have been prepared. Unlike the previously reported cobalt(II) complex, these complexes form dimers via intermolecular S...S contacts in the solid state. The spectroscopic and magnetic properties of these species in the solid state and in solution are reported and compared to the previously reported Co(II) complex, with emphasis on the elucidation of the a monomer/dimer equilibrium in the solution. The electrochemical properties of these species in solution are also presented and discussed.     

Observation and Photophysical Characterization of Silicon Phthalocyanine J‐Aggregate Dimers in Aqueous Solutions

The use of macrocyclic molecules for both imaging and photodynamic therapy (PDT) has proven to be a powerful method for assessing and treating diseases, respectively. However, many potential candidates for these applications rely on rigid organic structures which are hydrophobic and thus lead to possible aggregation in aqueous solutions such as blood. Here, we describe the discovery of noncovalent J‐aggregate dimers of the asymmetrically, axially modified silicon phthalocyanine 4 (Pc 4) in aqueous solutions through steady‐state and time‐resolved spectroscopy. Remarkably, the monomer–dimer equilibrium is dictated by water content and pH, with free monomers resulting in favorable solvation conditions even after formation of the dimer complex. This work sheds light on previous observations of Pc 4 behavior in cells during PDT, and can further elucidate the structure–activity relationship of these important molecules.     

End-evaporation dynamics revisited

We present analytical results on the so-called end-evaporation kinetics in equilibrium polymeric systems following a temperature jump (T jump). A T jump prepares the system with a nonequilibrium length distribution, after which it relaxes back to its equilibrium state. Starting from a master equation, we develop a mean-field analytical theory based on a generating function approach, which allows explicit approximate expressions for the monomer and dimer concentrations to be derived in a discrete setting; the concentrations of the other chains as well as the average chain length were shown to be entirely expressible in terms of the monomer and dimer concentrations. We find that the calculated monomer and dimer concentrations as well as the average chain length are in good agreement with numerical simulation results and do not suffer from some of the defects of earlier continuum theories. Furthermore, the relaxation was shown to take place in three different stages. The first stage comprises the very fast relaxation of the monomers to almost their equilibrium concentration; the other polymer chains have hardly relaxed. During the second stage, which is highly nonlinear, a redistribution of material at practically constant monomer density takes place. Only in the final stage of the relaxation process the chain concentrations approach their true equilibrium values. In this stage there are only very small shifts in the concentrations of chains, which are governed by extremely slow "indirect" monomer-mediated processes.