A molecular simulation study of a cyclic siloxane with attached biphehylyl 4-allyloxybenzoate mesogens

A molecular simulation study of a cyclic siloxane macromolecule based on a pentamethylcyclosiloxane core and biphenylyl 4-allyloxybenzoate mesogenic units is reported. Molecular dynamics and semi-empirical calculations were used to provide insight into the conformation and the dielectric properties of the material. Out of three proposed conformations of the molecules, a cylindrical conformation was found to be the most probable. The intermolecular interactions were found to be optimized for the case where the mesogenic groups were planar and parallel to each other. The calculated mesogen length and inter-mesogen distances were consistent with available X-ray data. Electrostatic interactions were found to make a very significant contribution to the total energy. For the cylindrical model, the major component of the dipole was calculated to be along the long axis of the molecules. This is consistent with the alignment of the molecules parallel to a low frequency applied electric field as found experimentally.     

Structural studies of laterally attached liquid crystalline polymers

Abstract

Structural studies of a series of laterally attached side chain liquid crystalline polysiloxanes have been made by X-ray diffraction. All but one exhibit a nematic phase with S_C-like short range ordering. The diffraction has been interpreted in terms of a model in which the mesogenic units form a ‘jacket’ around the polymer backbone. The backbone conformation has been studied by small angle X-ray scattering from oriented samples of mesomorphic solutions and by infrared dichroism measurements on oriented samples of the polymers. In both cases the results were consistent with the mesogens being oriented parallel to the backbone which is consistent with the ‘mesogen jacket’ model.     

On the structure and the chain conformation of side-chain liquid crystal polymers

Abstract

Backbone anisotropy and the structure of the mesophases of a series of side-chain liquid crystal polymers have been studied in the bulk by neutron scattering. The backbone conformation is obtained by small-angle neutron scattering on mixtures of hydrogenous polymers with deuteriated backbones. The components of the radius of gyration parallel, R _⊥ and perpendicular, R ∥ to the magnetic field are determined as a function of temperature for both the nematic phase and the smectic phase. It is shown that the polymer backbone is deformed in both phases. When the polymer exhibits only a nematic phase, it adopts a prolate conformation, where the average backbone direction is more or less parallel to the aligned mesogenic groups. Upon transition from the smectic phase to a nematic phase, the backbone in the nematic phase assumes a slightly oblate shape. This tendency towards oblate shape is due to the smectic fluctuations which are always present in such nematic phases. The exentricity of the oblate backbone conformation in the smectic phase is always larger than in the nematic phase. This is attributed to a periodic distribution of the backbone between the mesophase layers. Then, the backbone anisotropy depends not only on the smectic structure (S_A1, S_Ad), but also on the temperature dependence of the density of aligned mesogenic groups in the layers. On the other hand, it is shown that the isotopic mixtures are no longer ideal when polymers deuteriated in the mesogenic moieties are mixed with the corresponding hydrogenous polymers.     

New room temperature nematogens by cyano tail termination of alkoxy and alkylcyanobiphenyls and their anchoring behavior on metal salt-decorated surface

ABSTRACT

A series of cyano tail-terminated alkoxy and alkyl cyanobiphenyl compounds and some cyano-p-terphenyl derivatives were synthesized and mesogenic properties described. Comparison with the K series and M series indicates that the terminal cyano group generally enhances the supercooling of the molecules. Furthermore, several binary LC mixtures formed by the cyano tail-terminated compounds were found exhibiting promising room temperature nematic phases ranges comparable to the commercial quaternary mixture E7. The equimolar binary mixture of CN5OCB and CN7OCB shows homeotropic ordering at the metal salts-decorated surfaces and planar ordering at the free surface, which is consistent with G_BE values we calculated. As such, these materials are promising candidates for sensor devices which display a rapid response to a variety of analytes.     

V-shaped Schiff’s base liquid crystals based on resorcinol: synthesis and characterisation

ABSTRACT

This paper designed and synthesised a series of V-shaped liquid crystal molecules (X-SBA_nE) with resorcinol as the core and Schiff base as the mesogenic arms (X-SBAA_n). The effects of polarity of terminal groups (X=-CH₃O,-CH₃,-Cl) and length of flexible chain (n = 4,6,8) on mesogenic ranges were discussed. The chemical structure of X-SBAA_n and X-SBA_nE was studied using FT-IR and ¹H-NMR while their thermal behaviour and mesogenic ranges were investigated via differential scanning calorimetry (DSC) and polarising optical microscopy (POM). The results indicated that X-SBAA_n containing OCH₃ and Cl substituents exhibited mesophase except for the analogue having CH₃ substituent which was found to be non-mesogenic. All of the synthesised X-SBA_nE had liquid crystal properties and exhibited nematic phases in heating and cooling. The length of the flexible spacers and terminal groups significantly influenced their mesogenic ranges.     

Helical structures induced by laterally-connected chiral twin molecules

Abstract

A novel chiral twin material, (R)-bis[5-octyloxy-2-(4-octyloxyphenoxycarbonyl)phenyl] 3-methyladipate, has been prepared, where two mesogenic parts are connected laterally by a spacer possessing a chiral centre. A weaker helical structure, in particular in the chiral smectic C (S?_c) phase, was found to be induced by the laterally-connected twin material than by the analogous terminally-connected twin material. If laterally-connected chiral twin molecules prefer to stay in the smectic layer structure so that the two mesogenic parts exist in the same smectic layer, the twist interaction between adjacent layers cannot be produced by direct correlation of motion and directions of two mesogenic parts. Thus, the helical structure in the S?_c phase induced by laterally-connected chiral twin molecules becomes weak. An analogous laterally-branched ‘monomeric’ compound, (S)-5-octyloxy-2-(4-octyloxyphenoxycarbonyl)phenyl 3-methyl-pentanoate, has also been prepared, and the induced helical structures compared.     

Synthesis and mesomorphic properties of some biphenyl-phenyl triesters as potential longitudinal ferroelectrics

Abstract

A homologous series of “fraternal twin” molecules consisting of relatively short and relatively long mesogenic units connected by a flexible spacer group and flexible chains as the terminal groups was synthesized in an attempt to form a non-chiral longitudinal ferroelectric smectic phase. The shorter of the two mesogenic units consisted of a 4-alkyl/alkoxy substituted biphenyl ester; the longer a terbenzoate group. Mesomorphic properties were determined by hot-stage polarizing microscopy and DSC. Several smectic phases were observed as well as nematic phases. Characterization of the smectic phases by microscopic textures is discussed.     

Theoretical Studies on the Structure and Intramolecular Interactions of Fagopyrins—Natural Photosensitizers of Fagopyrum

Simple SummaryThe study determines the spatial structure and intramolecular interactions of fagopyrins—natural photosensitizers of Fagopyrum species. In silico calculations show many fagopyrin conformers characterized by the formation of strong intramolecular interactions.AbstractCompounds characterized by a double-anthrone moiety are found in many plant species. One of them are fagopyrins—naturally occurring photosensitizers of Fagopyrum. The photosensitizing properties of fagopyrins are related to the selective absorption of light, which is a direct result of their spatial and electronic structure and many intramolecular interactions. The nature of the interactions varies in different parts of the molecule. The aim of this study is to determine the structure and intramolecular interactions of fagopyrin molecules. For this purpose, in silico calculations were used to perform geometry optimization in the gas phase. QTAIM and NCI analysis suggest the formation of the possible conformers in the fagopyrin molecules. The presence of a strong OHO hydrogen bond was shown in the anthrone moiety of fagopyrin. The minimum energy difference for selected conformers of fagopyrins was 1.1 kcal∙mol⁻¹, which suggested that the fagopyrin structure may exist in a different conformation in plant material. Similar interactions were observed in previously studied structures of hypericin and sennidin; however, only fagopyrin showed the possibility of brake the strong OHO hydrogen bond in favor of forming a new OHN hydrogen bond.     

Modelling a nematic liquid crystal

The bulk phase liquid crystalline behaviour of a cyclic siloxane with a pentamethylcyclosiloxane core and biphenyl-4-allyloxybenzoate mesogens (BCS) was studied using molecular dynamics (MD) and wide angle X-ray analysis. This material exhibits partial crystallinity at room temperature and liquid crystalline behaviour above 120° C. For the MD simulations an ensemble of 27 molecules with 135 mesogenic units was simulated and a molecular mechanics force field was used to model the structural anisotropy of the siloxane molecules. Simulations were carried out both at room temperature and at an elevated temperature (425 K). Room temperature simulations showed that, contrary to our initial assumptions, the low energy molecular conformations were not cylindrical but splayed in shape. During the simulation a smectic-like, tilted layer structure was found to evolve for the cluster when full atom potentials were used, while no such development was observed when electrostatic interactions were neglected. The presence of a tilted layered structure was also suggested by the X-ray data. These results indicate that long range electrostatic interactions are significant for the molecular system under study. In order to calculate the orientational order parameter, the orientation of the molecular axis had to be determined. This was achieved by describing the mesogen shapes to be ellipsoidal and defining the principal axis of the ellipsoids to be the molecular directors. By sampling over 200 ps of simulation at 425 K, the time averaged order parameter (S) was calculated. The calculated S of 0.36 was comparable to the value of 0.4-0.45 found from the experimental data. Apart from providing insight into the relative importance of the various competing forces in the formation of the liquid crystalline phase, these simulations are also expected to be useful in predicting the mesophase behaviour of liquid crystalline systems.     

Benzo-15-crown-5 1∶1 and 1∶2 complexes with dithiooxamide and thioacetamide

Benzo-15-crown-5 and thiooxamide in the 11 complex form infinite chains of alternating host-guest molecules. The host oxygen atoms are involved in six close interactions with amide hydrogen atoms forming one bifurcated and one single hydrogen interaction on each face. In the 12 complex the host forms a distinct molecular entity with two thioacetamide molecules. Again one bifurcated and one normal hydrogen...oxygen interaction occurs on each face. The conformation of the benzo-15-crown-5 host is the same in both complexes and agrees with a conformation of the free host calculated by molecular mechanics. The conformation of crystalline benzo-15-crown-5 differs from that calculated. In either case, no major conformational reorganization is required to accommodate the intermolecular interactions. The oxygen atoms of the benzo-15-crown-5 form an approximate pentagon with the amide nitrogen atoms lying 2.18(1) Å from the mean plane. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82041 (43 pages).     

Nematic conformation of oxyethylene spacers involved in main-chain liquid crystals

²HNMR measurements were performed on main-chain dimer and polymer liquid crystals (LC) having oxyethylene (OE) spacers -(OCH₂CH₂)_xO-(x=2, 3). The orientational as well as conformational characteristics of these molecules have been investigated in bulk and in a nematic solution. The OE spacer was found to take spatial arrangements characteristics of the nematic phase. The nematic conformation of the spacer remains nearly invariant over a wide range of temperature and concentration. In these analyses, the ratio of the deuterium quadrupolar splittings Δν/Δν^R (Δν: spacer and Δν^R: mesogenic unit) provided an important information regarding the spatial configuration of molecules in the LC state. The results obtained in this study are consistent with our previous conclusion drawn on a series of main-chain LC oligomers and polymers comprising n-alkane spacers -O(CH₂)_nO- (n=9, 10).     

A theoretical study of malonate ion and its metal binding by ab initio and semiempirical techniques

STO-3G and CNDO calculations have been performed on malonate ion and its Mg²⁺ complexes. The parallel carboxyl group arrangement is found to be the single minimum energy conformation with both techniques. In the metal binding studies, the binding of a Mg²⁺ to a single carboxyl is preferred over binding symmetrically to both carboxyls in their parallel conformation. These results are consistent with X-ray structure results on calcium malonate.     

Ferroelectricity of induced S*C phases with novel chiral dopants

Abstract

Induced S*_C phases can be obtained by dissolving chiral dopants in achiral S_C host phases. If the chiral guest molecules bear a transverse dipole, ferroelectricity will occur. The novel dopants under discussion are characterized by chiral centres and the transverse dipole situated not in the alkyl end groups of the mesogenic molecules, but directly in their rigid cores. As a rigid core, analogues of decalin were used. In those dopants, rotation around the molecular long axis is sterically restricted. According to the microscopic model of Zeks, this leads to enhanced values of the spontaneous polarization P _s. The magnitude as well as the sign of the spontaneous polarization P _s of the S*_C phases induced by the novel dopants in different host phases has been investigated. It has been found for the first time that for a given dopant, the polarization as well as the sign of P _s depends on the structure of the host phase. The results are discussed in terms of two microscopic models. They can be understood taking into account the situation that the potential of the restricted long axial rotation is determined by the hard core interactions of the molecules involved or that an orientation of the host dipoles by a guest/host interaction takes place.     

Crystal structure and mesogenic behaviour of a new fluorene derivative: 9,9‐dimethyl‐2,7‐bis(4‐pentylphenyl)‐9H‐fluorene

The title compound, C₃₇H₄₂, is a new mesogenic compound containing the fluorene moiety. It exhibits enantiotropic nematic liquid crystalline behaviour with melting at 125 °C and isotropization at 175 °C. The crystallographically independent unit contains two molecules oriented face‐to‐edge with respect to each other. The two molecules have nearly the same conformation of the bis‐phenyl fluorene moiety. The molecular packing in the crystal phase is nematic‐like.     

Influence of mesogenic core polarity and position of chains attachment on columnar phase stability

Series of new Ni(II) metalomesogens of triangular molecular shape and forming Col_h liquid crystalline (LC) phase were synthesised and described. Using in the molecular core the barbituric moieties that contain carbonyl or thiocarbonyl groups causes strong polarisation of the molecules and creates a permanent dipole moment μ, which was confirmed by quantum mechanical calculations. The relationship between molecular dipole moment and self-organisation of molecules into the columnar phase was considered. The position of alkyl and alkoxy chains substituted at phenyl ring that affects LC phase formation seems to be connected with planar conformation of the attached chains. These can broaden the mesogenic core and stabilise the Col_h mesophase.     

A simple molecular theory of a nematic–nematic phase transition in highly polar compounds

Abstract

We have extended an earlier molecular model which was developed to explain the double reentrant sequence in highly polar compounds to predict the possibility of a nematic (N₁)–nematic (N₂) phase transition in such compounds. At moderate densities the dipolar interactions would give rise to an antiparallel near neighbour arrangement of the polar molecules while at higher densities, the dipole–induced dipole and chain–chain dispersion interactions give rise to a parallel configuration. The N₁–N₂ transition corresponds to a jump in the relative concentration of the two species. Using the mean field approximation we have calculated the phase diagram. The weak first order transition disappears above a critical point as a function of an appropriate parameter. We have also calculated the specific heat anomaly around the transition region.     

The NMR spectra and conformations of cyclic compounds–III: The conformations of some pinane derivatives

The 220 MHz ¹H spectra of isoverbanone, nopinone and verbanone are reported. The spectra of the first two are completely assigned but that of verbanone only partially. The coupling constants obtained provide information about the conformation of these molecules. The isoverbanone molecule is almost Y shaped, but that of nopinone is between a Y shape and a half-chair conformation with the six membered ring bent away form the gem dimethyl groups. These conformations are consistent with the known steric interactions in these molecules.     

Conformational behaviour of laterally dialkoxy branched mesogens. Part one

The crystal structures of two mesogenic compounds having two neighbouring lateral alkoxy chains in the central part of the molecules have been solved. In both structures, the common four ring central core is extended and quite rigid with a total length close to 28.5 Å. All the molecules are strictly parallel because of the P1 space group; the molecular arrangement is characteristic of a nematogenic system. In these structures, the lateral alkoxy chains are folded back to the core; they exhibit slightly different conformations and are quite disordered. The ¹³C chemical shift of the first -OCH₂- within the lateral chains can probe the mean conformation of the chain in the nematic phase. This chemical shift is independent of the compound. Nevertheless, in the solid phase, this chemical shift is dependent on small geometrical changes due to the influence of the oxygen in the neighbouring lateral chain. In addition, temperature cycling of the sample leads to different crystalline solid forms as evidenced by DSC and NMR studies.     

Effect of smectogenicity of the ionic groups on the thermotropic liquid crystalline behavior of pyridinium and poly(4-vinylpyridinium) salts quaternized with mesogenic groups

In order to demonstrate the important smectic power of the ionic functions present in mesogenic molecules, a series of N-alkylpyridinium bromides ω-substituted with (4-cyanobiphenylyl)oxy or [4-(2-methyl-1-butoxy)biphenylyl]oxy mesogenic group and their analogous 4-vinylpyridinium polymers were synthesized and characterized. The liquid crystalline behavior was studied by differential scanning calorimetry, polarizing optical microscopy, and X-ray diffraction. Smectic mesophases, namely A, B, and E, were identified for the low molecular weight compounds, whereas smectic A and E mesophases were identified for the analogous polymers. Both structures were found to be very similar. They consist of single layers of upright molecules laterally arranged head-to-tail; the polymer backbone is inserted in between the layers. The monolayer smectic ordering observed in spite of the presence of the interacting cyano and chiral groups demonstrates the prevailing effect of the electrical interactions upon the structural organization. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35: 2569–2577, 1997