Hydrogen-bonded liquid crystals built from hydrogen-bonding donors and acceptors. Infrared study on the stability of the hydrogen bond between carboxylic acid and pyridyl moieties

The stability of a hydrogen-bonded complex built through inter-molecular hydrogen bonding between carboxylic acid and pyridine fragments has been examined using infrared spectroscopy. Infrared spectra as a function of temperature have been recorded for the 1:1 complex of 4-hexyloxybenzoic acid and trans-4-propoxy-4'-stilbazole from the crystalline state to the isotropic state. A dependence of the stability of the hydrogen bond on molecular orientation is observed clearly in the infrared spectra. The spectra also suggest that the hydrogen bond is an unionized type with a double minimum potential energy.     

Time‐dependent density functional theory study on the electronic excited‐state geometric structure,infrared spectra,and hydrogen bonding of a doubly hydrogen‐bonded complex

The geometric structures and infrared (IR) spectra in the electronically excited state of a novel doubly hydrogen‐bonded complex formed by fluorenone and alcohols, which has been observed by IR spectra in experimental study, are investigated by the time‐dependent density functional theory (TDDFT) method. The geometric structures and IR spectra in both ground state and the S₁ state of this doubly hydrogen‐bonded FN‐2MeOH complex are calculated using the DFT and TDDFT methods, respectively. Two intermolecular hydrogen bonds are formed between FN and methanol molecules in the doubly hydrogen‐bonded FN‐2MeOH complex. Moreover, the formation of the second intermolecular hydrogen bond can make the first intermolecular hydrogen bond become slightly weak. Furthermore, it is confirmed that the spectral shoulder at around 1700 cm^?1 observed in the IR spectra should be assigned as the doubly hydrogen‐bonded FN‐2MeOH complex from our calculated results. The electronic excited‐state hydrogen bonding dynamics is also studied by monitoring some vibraitonal modes related to the formation of hydrogen bonds in different electronic states. As a result, both the two intermolecular hydrogen bonds are significantly strengthened in the S₁ state of the doubly hydrogen‐bonded FN‐2MeOH complex. The hydrogen bond strengthening in the electronically excited state is similar to the previous study on the singly hydrogen‐bonded FN‐MeOH complex and play important role on the photophysics of fluorenone in solutions. © 2009 Wiley Periodicals, Inc. J Comput Chem 2009     

Recognition Studies of a Pyridine-Pendant Calix[4]arene with Neutral Molecules: Effects of Non-covalent Interactions on Supramolecular Structures and Stabilities

A new calix[4]arene derivative containing hydrogen bond acceptors,5,11,17,23-tetra-tert-butyl-25,27-bis[(4-pyridylmethyl)oxy]-26,28-dihydroxycalix[4]arene (L), has been synthesized. ¹H-NMR titrations in chloroform-d werecarried out to investigate the host–guest chemistry ofL towards neutral molecules containing a widevariety of hydrogen bond donor groups such as aldehydederivatives of p-tert-butylcalix[4]arenes(compounds 3 and 4), acetylacetone,1,2-diaminoethane, 2,6-diaminopyridine, catechol,resorcinol, hydroquinone, phthalic acid, isophthalicacid and terephthalic acid. L can formcomplexes with resorcinol, phthalic acid and catecholin 1 : 1 (log K = 3.13), 1 : 1 (log K = 5.41) andpolymeric fashions, respectively. In addition, thesolution structures of these complexes have beenrevealed by NOESY experiments. L forms a 1 : 1complex with resorcinol by hydrogen bonding and vander Waals interactions resulting in a supramolecularframework. The phthalic acid molecule interacts withL via hydrogen bonding and is included into thelower rim cavity of L.     

Spectroscopic studies of the 1:1 complex of piperidine-4-carboxylic acid (isonipecotic acid) with 2,6-dichloro-4-nitrophenol

The 1:1 complex of piperidine-4-carboxylic acid (isonipecotic acid, P4C) with 2,6-dichloro-4-nitrophenol (DCNP), has been investigated by single-crystal X-ray analysis, Raman and FTIR spectroscopy and theoretical calculations. The hydrogen-bonded-ion-pair complex is observed in the crystalline state with the O⋯H⋯OOC hydrogen bond of 2.453(16) Å. FTIR spectrum shows a broad absorption in the 1600–400 cm⁻¹ region characteristic of very short OHO hydrogen bond, broken by the Evans holes. The complexes are joined through NH⋯O into a H-bonding network. The NH⋯O mode appears as a broad band in the range of 3100–2000 cm⁻¹. In the structure optimized at the B3LYP/6–311 + +G(d,p) level of theory the proton is transferred from DCNP to P4C, and molecules are joined through the O⋯HOOC hydrogen bond of 2.640 Å. The experimental and theoretical infrared spectra are discussed. Detail interpretation of the vibrational spectra has been carried out with the use of computed Potential Energy Distribution (PED).     

Spectroscopic studies of the 1:1 adduct of N-methylmorpholinium-acetate with hydrobromic acid in the crystalline and gaseous state

The 1:1 complex of N-methylmorpholinium-acetate, MMB, with hydrobromic acid (1) has been investigated by single-crystal X-ray analysis, infrared spectroscopy and theoretical calculations. The proton-transfer complex has been observed in the crystalline state, with the COOH⋯Br hydrogen bond with the O⋯Br distance of 3.107(2) Å. In the structure optimized at the B3LYP/6-311++G(d,p) levels of theory the proton is closer to the bromide anion, with the BrH⋯OOC distance of 3.069 Å. The potential energy distributions (PED) have been used for the assignments of IR bands. The experimental and theoretical infrared spectra have been discussed.     

Physical and chemical properties of hydroxyflavones. IV. Infrared absorption spectra of dihydroxyflavones containing the 5-hydroxyl group

Solid state infrared curves (O-H and C-H stretching region) are given for 5, n-dihydroxyflavones, where n is 2′, 3′, 4′, 6, 7 and 8. In chloroform solution spectra of 3,5-dihydroxyflavone and 3-hydroxy-5-methoxyflavone, the 3-OH stretching band appears at 3400 and 3334 cm^?1, respectively, indicative of a stronger hydrogen bond in the latter substance. Solid state and solution carbonyl bands are presented for twenty-six flavone derivatives which contain a hydroxyl, methoxyl or acetoxyl group at the 5-position. The solution spectra (dioxane or carbon tetrachloride) of fourteen flavone derivatives containing a free 5-hydroxyl group show carbonyl bands at 1655±2 cm^?1. Eleven flavones in which the 5-hydroxyl is blocked (carbon tetrachloride solution) give spectra with flavone carbonyl bands at 1653±3 cm^?1. The high resolution chloroform solution spectrum of 3, 5-dihydroxyflavone possesses a multi-peaked carbonyl band with midpoint at 1641 cm^?1. The chloroform solution spectrum of 3-hydroxy-5-methoxyflavone has a very strong band at 1616 cm^?1, with shoulder at 1646 cm^?1. Spectral data of this and a previous paper support the postulate that in 4′-hydroxyflavone the flavone carbonyl oxygen is the donor atom in an intermolecular hydrogen bond. Certain details of synthesis, and analytical data, are given for 3, 5-dihydroxyflavone.     

Hydrogen bond and proton transfer in complexes of trioctylamine with halogenoacetic acids

The infrared spectra of solutions containing trioctylamine and monohalogenoacetic acids have been investigated in the region 1500–1800 cm^?1. Two forms of complexes 1: 1 acid-amine, the molecular complex with hydrogen bond OH N and the ionic pair, resulting from proton transfer from acid to amine, have been found to exist in equilibrium with each other.     

Crystal structure,spectroscopic and thermal studies of 3-(4-hydroxy-3-methoxyphenyl)-2-propenoic acid sodium salt

The crystal structure, infrared spectrum and thermal stability of 3-(4-hydroxy-3-methoxyphenyl)-2-propenoic acid sodium salt have been studied. The compound of general formula {[Na₂L₂?·?3H₂O]?·?H₂O} _n is a two-dimensional polymer, in which Na ions are bridged by one or two water molecules and additionally coordinated to oxygen atoms of carboxylate, hydroxy and methoxy groups. The structure is stabilized by a hydrogen bond network. The compound dehydrates at 75°C and then decomposes at 150°C. The IR spectra of the salt and free acid are discussed.     

Architectural diversity of six coordination compounds based on (S)-(+)-mandelic acid and different N-donor auxiliary ligands: syntheses,structures, and luminescent properties

Six transition metal coordination compounds with H₂mand and different N-donor ligands, [Co(Hmand)₂(2,2′-bipy)]·H₂O (1), [Ni(Hmand)₂(2,2′-bipy)]·H₂O (2), [Ni(Hmand)₂(bpe)] (3), [Zn(Hmand)₂(2,4′-bipy)(H₂O)]·2H₂O (4), [Zn(Hmand)(bpe)(H₂O)]_n[(ClO₄)]_n·nH₂O (5), and [Zn(Hmand)(4,4′-bipy)(H₂O)]_n[(ClO₄)]_n (6), were synthesized under different conditions (H₂mand = (S)-(+)-mandelic acid, bpe = 1,2-di(4-pyridyl)ethane, 4,4′-bipy = 4,4′-bipyridine, 2,4′-bipy = 2,4′-bipyridine, 2,2′-bipy = 2,2′-bipyridine). Their structures were determined by single-crystal X-ray diffraction analysis and further characterized by elemental analysis, infrared spectra, thermogravimetric analysis, powder X-ray diffraction, and circular dichroism. Compounds 1 and 2 are isostructural (0-D structures), which are extended to supramolecular 1-D chains by hydrogen bonding. Compound 3 exhibits 1-D straight chain structures, which are further linked via hydrogen bond interactions to generate a 3-D supramolecular architecture. Compound 4 displays a discrete molecular unit. Neighboring units are further linked by hydrogen bonds and π–π interactions to form a 3-D supramolecular architecture. Compound 5 displays a 2-D undulated network, further extended into a 3-D supramolecular architecture through hydrogen bond interactions. Compound 6 possesses a 2-D sheet structure. Auxiliary ligands and counteranions play an important role in the formation of final frameworks, and the hydrogen-bonding interactions and π–π stacking interactions contributed to the formation of the diverse supramolecular architectures. Compounds 1, 2, 4, 5, and 6 crystallize in chiral space groups, with the circular dichroism spectra exhibiting positive cotton effects. Furthermore, the luminescent properties of 4–6 have been examined in the solid state at room temperature, and the different crystal structures influence emission spectra significantly.     

TD-DFT Study on the Excited-State Hydrogen Bonding of the p-Cresol–NH3–H2O Complex

In this work, the time-dependent density functional theory (TD-DFT) method was used to study the electronic excited-state dynamics of the hydrogen-bonded p-Cresol–NH₃–H₂O complex. The intermolecular hydrogen bonds O₁–H₁···N and C–O₁···H₂ were demonstrated by the optimized geometric structure of the hydrogen-bonded p-Cresol–NH₃–H₂O complex. The infrared spectra (IR spectra) of the hydrogen-bonded p-Cresol–NH₃–H₂O complex in the ground and excited states were also calculated by using the density functional theory (DFT) and TD-DFT methods. It is demonstrated that hydrogen bond O₁–H₁···N can be strengthened while hydrogen bond C–O₁···H₂ is weakened upon photoexcitation to the S₁ state. The significant changes of the hydrogen bond from the calculated bond lengths in different electronic states can be observed. In addition, the spectral shifts of the stretching vibrational mode of the hydrogen-bonded O–H group in different electronic states are accounted for the hydrogen bond changes in the S₁ state too.     

A DFT/TDDFT Investigation of Excited State Dynamical Mechanism of (E)‐1‐((2,2‐Diphenylhydrazono)methyl)naphthalen‐2‐ol

The excited‐state intramolecular proton transfer (ESIPT) mechanism of a new compound (E )‐1‐((2,2‐diphenylhydrazono)methyl)naphthalen‐2‐ol ( EDMN ) sensor, reported and synthesized by Mukherjee et al . [Sensors Actuat. B‐Chem . 2014, 202 , 1190], is investigated in detail theoretically. The calculations on primary bond lengths, bond angles, and the corresponding infrared (IR) vibrational spectra and hydrogen‐bond energy involved in intramolecular hydrogen bond between the S₀ and S₁ states confirm that the intramolecular hydrogen bond is strengthened in the S₁ state, which reveals the tendency of ESIPT reaction. The fact that the experimental absorption and emission spectra are well reproduced demonstrates the rationality and effectiveness of the time‐dependent density functional theory (TDDFT) level of theory we adopt here. Furthermore, intramolecular charge transfer based on the frontier molecular orbitals (MOs) gives indication of the ESIPT reaction. The constructed potential energy curves of both the S₀ and S₁ states while keeping the O─H distance of EDMN fixed at a series of values are used to illustrate the ESIPT process. The lower barrier of ~3.934 kcal/mol in the S₁ state potential energy curve (lower than the 8.254 kcal/mol in the S₀ state) provides the transfer mechanism.     

Vibrational and theoretical study of the 2',6'-dimethoxyflavone cis-formic acid inclusion compound

The FT-infrared and Raman microscopy spectra of the 2',6'-dimethoxyflavone and its 1:1 complex with formic acid in solid state have been recorded and analysed. Some vibrational components appear as specific to the cis-rotamer of formic acid in the crystalline sample, especially the CH group stretching vibration feature. The broad and intense infrared absorption observed in the range 3400-1900 cm(-1) and assigned to the hydrogen bonded OH group stretching vibration exhibits the characteristic ABC structure of strong hydrogen bonded complexes. This ABC pattern corroborates previous X-ray crystallographic data showing that cis-formic acid is strongly hydrogen bonded to the flavonic compound. The inclusion complex is quite unstable and the infrared spectrum clearly shows that formic acid disappears after a period of a few months. In order to get some information on the stability criterions of the intermolecular hydrogen bonded complex, semiempirical AM1 calculations have been investigated. The comparison of the calculated heats of complexation (deltacH) for chelates involving the cis- and trans-conformers of formic acid suggests that the reaction of hydrogen bonding complexation with the cis-rotamer is surely favoured.     

A Theoretical Investigation on Intramolecular Hydrogen Bond: The ESIPT Mechanism of dmahf Sensor

The properties of intramolecular hydrogen bond of a new photochemical sensor 4′-N,N-dimethylamino-3-hydroxyflavone (dmahf) has been investigated in detail. Using Atoms-In-Molecule method, we have demonstrated that the intramolecular hydrogen bond was formed in the ground state (S₀ state). The calculated dominating bond lengths and angles involved in hydrogen bond demonstrates that the intramolecular hydrogen bond can be strengthened in the first excited state (S₁ state). In addition, the variation of hydrogen bond of dmahf has been also testified based on infrared vibrational spectra. Further, hydrogen bonding strengthening manifests the tendency of excited state intramolecular proton transfer process. According to the calculated results of potential energy curves along O–H coordinate, the potential energy barrier of about 7.49 kcal/mol is discovered in the S₀ state. However, a lower potential energy barrier of 1.61 kcal/mol has been found in the S₁ state, which demonstrates that the proton transfer process is more likely to happen in the S₁ state than the S₀ state. In other words, the proton transfer reaction can be facilitated based on the photoexcitation effectively. In turn, through the process of radiative transition, the proton-transfer form dmahf-keto regresses to the ground state with the fluorescence of 578 nm.     

The mass spectra of benzamide and thiobenzamide

The mass spectra of benzamide, thiobenzamide and their N-d₂ analogues have been studied In addition to fragmenting by simple bond cleavages the molecular ions dissociate partly from their imide forms. Equilibration or ‘scrambling’ of ortho ring hydrogen atoms with amide hydrogen did not occur in benzamide but such exchange must take place in the thiocompound whose fragmentation behaviour is very complex. Neither labelled compound produced the label-retaining benzoyl (thiobenzoyl) cation which has been the subject of much interest in the mass spectrum of O-d₁ benzoic acid.     

A detailed theoretical study on the excited‐state hydrogen‐bonding dynamics and the proton transfer mechanism for a novel white‐light fluorophore

In this work, density functional theory (DFT) and time‐dependent DFT (TDDFT) methods were used to investigate the excited‐state dynamics of the excited‐state hydrogen‐bonding variations and proton transfer mechanism for a novel white‐light fluorophore 2‐(4‐[dimethylamino]phenyl)‐7‐hyroxy‐6‐(3‐phenylpropanoyl)‐4H‐chromen‐4‐one ( 1 ). The methods we adopted could successfully reproduce the experimental electronic spectra, which shows the appropriateness of the theoretical level in this work. Using molecular electrostatic potential (MEP) as well as the reduced density gradient (RDG) versus the product of the sign of the second largest eigenvalue of the electron density Hessian matrix and electron density (sign[λ₂]ρ), we demonstrate that an intramolecular hydrogen bond O1–H2···O3 should be formed spontaneously in the S₀ state. By analyzing the chemical structures, infrared vibrational spectra, and hydrogen‐bonding energies, we confirm that O1–H2·O3 should be strengthened in the S₁ state, which reveals the possibility of an excited‐state intramolecular proton transfer (ESIPT) process. On investigating the excitation process, we find the S₀ → S₁ transition corresponding to the charge transfer, which provides the driving force for ESIPT. By constructing the potential energy curves, we show that the ESIPT reaction results in a dynamic equilibrium in the S₁ state between the forward and backward processes, which facilitates the emission of white light.     

Three transition-metal polymers from imidazole dicarboxylates-bearing methoxyphenyl groups: syntheses,crystal structures and properties

Three coordination polymers, namely, {[Cu₂(HMOPhIDC)(4,4′-bipy)]}_n (H₃MOPhIDC = 2-(3-methoxyphenyl)-1H-imidazole-4,5-dicarboxylic acid) (1), [Co(HDMOPhIDC)(phen)]_n (H₃DMOPhIDC = 2-(3,4-dimethoxyphenyl)-1H-imidazole-4,5-dicarboxylic acid) (2) and [Ni₂(HDMOPhIDC)₂(H₂O)₄]_n (3) have been prepared under hydrothermal condition and characterised by elemental analyses, infrared spectroscopy and single-crystal X-ray diffraction. Each of the polymers 1–3 is a 1D column-like structure and displays a 3D supramolecular network via the π…π stacking or hydrogen bond interactions. Furthermore, fluorescence and UV–vis spectroscopic properties of the polymers have been studied.     

系列双核稀土配合物的合成、晶体结构及光物理性质

本文采用水热法合成了4种双核稀土配合物[Y₂(p-MBA)₆(Phen)₂] (1)、[Y₂(p-ClBA)₆(Phen)₂] (2)、[Pr₂(BA)₆(Phen)₂](3)和[Pr₂(p-ClBA)₆(H₂O)₂(Phen)₂](4)[Phen=邻菲咯啉、p-MBA=对甲基苯甲酸、BA=苯甲酸、p-ClBA=对氯苯甲酸]。测定了4种配合物的单晶结构。4种配合物在结构和配位方式上有很多的相似之处,它们的晶体都属于三斜晶系,P1空间群。在分子中,每个稀土离子与1个邻菲咯啉分子螯合,2个稀土离子均以苯甲酸根或其衍生物为桥。但是,桥连配体的数目以及配体的配位方式不尽相同。配合物4中配位水分子与对氯苯甲酸根之间形成了氢键,氢键将双核配合物4连接成二维层状网络结构。对4种配合物的UV-Vis-NIR、IR和荧光性质进行了测定和对比分析。配合物1和2的荧光指认为LLCT和LMCT,而配合物3和4的荧光表现出LLCT与LMCT混合跃迁及Pr³⁺的特征发射。     

A theoretical study on the excited‐state intramolecular proton transfer mechanism of 4′‐dimethylaminoflavonol chemosensor

In this work, density functional theory (DFT) and time‐dependent density functional theory (TDDFT) methods are used to explore the excited‐state intramolecular proton transfer (ESIPT) mechanism of a novel system 4′‐dimethylaminoflavonol (DAF). By analyzing the molecular electrostatic potential (MEP) surface, we verify that the intramolecular hydrogen bond in DAF exists in both the S₀ and S₁ states. We calculate the absorption and emission spectra of DAF in two solvents, which reproduce the experimental results. By comparing the bond lengths, bond angles, and relative infrared (IR) vibrational spectra involved in the hydrogen bonding of DAF, we confirm the hydrogen‐bond strengthening in the S₁ state. For further exploring the photoexcitation, we use frontier molecular orbitals to analyze the charge redistribution properties, which indicate that the charge transfer in the hydrogen‐bond moiety may be facilitating the ESIPT process. The constructed potential energy curves in acetonitrile and methylcyclohexane solvents with shortened hydrogen bond distances demonstrate that proton transfer is more likely to occur in the S₁ state due to the lower potential barrier. Comparing the results in the two solvents, we find that aprotic polar and nonpolar solvents seem to play similar roles. This work not only clarifies the excited‐state behaviors of the DAF system but also successfully explains its spectral characteristics.     

Time‐dependent density functional theory study on the electronic excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in aqueous solution: 4AP and 4AP–(H2O)1,2 clusters

The time‐dependent density functional theory (TDDFT) method has been carried out to investigate the excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in hydrogen‐donating water solvent. The infrared spectra of the hydrogen‐bonded solute?solvent complexes in electronically excited state have been calculated using the TDDFT method. We have demonstrated that the intermolecular hydrogen bond C? O···H? O and N? H···O? H in the hydrogen‐bonded 4AP?(H₂O)₂ trimer are significantly strengthened in the electronically excited state by theoretically monitoring the changes of the bond lengths of hydrogen bonds and hydrogen‐bonding groups in different electronic states. The hydrogen bonds strengthening in the electronically excited state are confirmed because the calculated stretching vibrational modes of the hydrogen bonding C?O, amino N? H, and H? O groups are markedly red‐shifted upon photoexcitation. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electroniclly excited state of chromophores in hydrogen‐donating solvents exists in many other systems in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Cover Feature: An Exploration of the Hydrogen Bond Donor Ability of Ammonia (ChemPhysChem 20/2023)

Ammonia is an important molecule due to its wide use in the fertiliser industry. It is also used in aminolysis reactions. Theoretical studies of the reaction mechanism predict that in reactive complexes and transition states, ammonia acts as a hydrogen bond donor forming N−H⋅⋅⋅O hydrogen bond. Experimental reports of N−H⋅⋅⋅O hydrogen bond, where ammonia acts as a hydrogen bond donor are scarce. Herein, the hydrogen bond donor ability of ammonia is investigated with three chalcogen atoms i. e. O, S, and Se using matrix isolation infrared spectroscopy and electronic structure calculations. In addition, the chalcogen bond acceptor ability of ammonia has also been investigated. The hydrogen bond acceptor molecules used here are O(CH₃)₂, S(CH₃)₂, and Se(CH₃)₂. The formation of the 1 : 1 complex has been monitored in the N−H symmetric and anti-symmetric stretching modes of ammonia. The nature of the complex has been delineated using Atoms in Molecules analysis, Natural Bond Orbital analysis, and Energy Decomposition Analysis. This work presents the first comparison of the hydrogen bond donor ability of ammonia with O, S, and Se.