Investigation of the crystal structure of two amphiphilic diols

The crystal and molecular structures of (R)-4'-(2,3-dihydroxypropyloxy)-4-cyanobiphenyl, 1 and 4'-(cis-cis-3,5-dihydroxycyclohexyloxy)-4-cyanobiphenyl, 5 have been determined. The packing of compound 1 occurs in sheets, with a dense hydrogen bonding network within the layer of one sheet and to the next sheet, whereby the cyano groups are incorporated into the hydrogen bonding network. The hydrogen bonding scheme of compound 5 involves a water molecule; there is some disorder with regard to the hydrogen atoms bound to the water molecules.     

Architectural diversity of six coordination compounds based on (S)-(+)-mandelic acid and different N-donor auxiliary ligands: syntheses,structures, and luminescent properties

Six transition metal coordination compounds with H₂mand and different N-donor ligands, [Co(Hmand)₂(2,2′-bipy)]·H₂O (1), [Ni(Hmand)₂(2,2′-bipy)]·H₂O (2), [Ni(Hmand)₂(bpe)] (3), [Zn(Hmand)₂(2,4′-bipy)(H₂O)]·2H₂O (4), [Zn(Hmand)(bpe)(H₂O)]_n[(ClO₄)]_n·nH₂O (5), and [Zn(Hmand)(4,4′-bipy)(H₂O)]_n[(ClO₄)]_n (6), were synthesized under different conditions (H₂mand = (S)-(+)-mandelic acid, bpe = 1,2-di(4-pyridyl)ethane, 4,4′-bipy = 4,4′-bipyridine, 2,4′-bipy = 2,4′-bipyridine, 2,2′-bipy = 2,2′-bipyridine). Their structures were determined by single-crystal X-ray diffraction analysis and further characterized by elemental analysis, infrared spectra, thermogravimetric analysis, powder X-ray diffraction, and circular dichroism. Compounds 1 and 2 are isostructural (0-D structures), which are extended to supramolecular 1-D chains by hydrogen bonding. Compound 3 exhibits 1-D straight chain structures, which are further linked via hydrogen bond interactions to generate a 3-D supramolecular architecture. Compound 4 displays a discrete molecular unit. Neighboring units are further linked by hydrogen bonds and π–π interactions to form a 3-D supramolecular architecture. Compound 5 displays a 2-D undulated network, further extended into a 3-D supramolecular architecture through hydrogen bond interactions. Compound 6 possesses a 2-D sheet structure. Auxiliary ligands and counteranions play an important role in the formation of final frameworks, and the hydrogen-bonding interactions and π–π stacking interactions contributed to the formation of the diverse supramolecular architectures. Compounds 1, 2, 4, 5, and 6 crystallize in chiral space groups, with the circular dichroism spectra exhibiting positive cotton effects. Furthermore, the luminescent properties of 4–6 have been examined in the solid state at room temperature, and the different crystal structures influence emission spectra significantly.     

Intermolecular interactions and the structure of near-surface layers in heterogeneous two-component systems based on nanocystallites of titanium dioxide

This contribution provides the theoretical background for the structure-determining role of hydrogen bonding in the formation of a near-surface layer of titania nanocrystallites, previously revealed by the authors in the investigation of IR experimental spectra of two-component solid mixtures of nanocrystalline titanium dioxide with benzophenone or 4-pentyl-4′-cyanobiphenyl. DFT calculations (B3LYP) in 6-31+G(d) basis set is used to simulate the structure and IR spectra of free molecules of water, 4-pentyl-4′-cyanobiphenyl, benzophenone and their H-complexes formed in the near-surface layers of titania nanocrystallites due to presence of water adsorbed on their surfaces. Using the results of simulation and analysis of IR spectrum bands corresponding to stretching vibrations of polar bonds O-H, C=O, C≡N, the formation mechanism of near-surface layers of titania nanocrystallites in the considered heterogeneous two-component systems is theoretically substantiated: they are formed by hydrogen-bonded complexes involving components of the mixture and water.     

Crystal structures of two polymorphic forms of DOTAM‐mono‐acid dihydrate

The structural chemistry of 2‐[4,7,10‐tris(carbamoylmethyl)‐1,4,7,10‐tetraazacyclododecan‐1‐yl]acetic acid dihydrate, C₁₆H₃₁N₇O₅·2H₂O, is described. The macrocyclic compound, also known by the abbreviation DOTAM‐mono‐acid, crystallized at room temperature and was isolated concomitantly as two polymorphic forms. The structures of both polymorphs were determined at 90 K. The first polymorph crystallized as a zwitterionic dihydrate [systematic name: 4,7,10‐tris(carbamoylmethyl)‐1‐(carboxylatomethyl)‐1,4,7,10‐tetraazacyclododecan‐1‐ium dihydrate] in the space group P2₁/n, with Z′ = 1. The second polymorph crystallized as a zwitterionic dihydrate in the space group P2₁ at 90 K, with Z′ = 2. The two independent molecules are related by a local center. In each polymorph, the zwitterion is formed between the negatively‐charged carboxylate group and the ring N atom that bears the acetate pendant arm. Extensive inter‐ and intramolecular hydrogen bonding exists in both polymorphic structures. In polymorph 1, an intermolecular hydrogen‐bonding network propagating parallel to the a direction creates an infinite chain. A second hydrogen‐bonding network is observed through a water molecule of hydration in the b direction. Polymorph 2 also has two intermolecular hydrogen‐bonding networks. One propagates parallel to the a direction, while the other propagates in the [10] direction. Increasing the temperature of polymorph 2 yields the same structure at T = 180 K, but the pseudocenter becomes exact at 299 K. The higher‐temperature structure has Z′ = 1 in the space group P2₁/c.     

Synthesis and properties of hydroxy tail-terminated cyanobiphenyl liquid crystals

Two series of new hydroxy tail-terminated cyanobiphenyl compounds are described. The 4′-ω-hydroxyalkynyl-4-cyanobiphenyl compounds (1a–1g) were synthesised as the key intermediates to the 4′-?ω-hydroxyalkyl-4-cyanobiphenyl compounds (2a–2g) obtained upon reduction of the acetylenes. Many of these ω-hydroxyalkynyl and ω-hydroxyalkyl cyanobiphenyl compounds exhibit nematic mesophases and they also serve as precursors for the synthesis of other interesting materials. Using density functional theory, we calculate the dipole moment of all relevant ω-hydroxyalkynyl and ω-hydroxyalkyl cyanobiphenyl compounds and find a correlation between the calculated dipole moments and measured crystalline to nematic or isotropic liquid transition temperatures.     

Tetrakis(tetramethylammonium) tricarbonatodioxidouranate octahydrate

The environment of the U atom in the title compound, (C₄H₁₂N)₄[UO₂(CO₃)₃]·8H₂O, presents a typical hexagonal bipyramidal geometry found in many actinide complexes. It is a model for actinide species and consists of common environmental moieties (carbonate, water and ammonia species). The structure displays a sheet‐like hydrogen‐bonding network formed from crystallization water molecules and carbonate ligands. The compound is isomorphous with a previously described Np isolog [Grigorev et al. (1997). Radiokhimiya (Russ. Radiochem.), 39 , 325–329].     

Synthesis of novel C-2 substituted pyrimidine nucleoside analogs

A series of 2-(2-oxoalkylidene)-4(1H)-pyrimidinone nucleoside analogs were synthesized by the addition of the lithium enolates of methylketones to 2,5′- and 2,2′-anhydrouridines and to 2,5′-anhydrothymidines. Alternatively, 2-thiouridine was alkylated with bromomethyl ketones to yield 2-(2-oxoalkyl)thio-4(1H)-pyrimidinone ribofuranosides in good yields. These intermediates were subsequently transformed into the title compounds via an Eschenmoser sulfur extrusion reaction. The 2-(2-oxoalkylidene)-4-(1H)-pyrimidinone nucleoside analogs exhibit enol proton signals in their ¹H nmr spectra indicative of hydrogen bonding between N-3 and keto oxygen. These structures offer functional groups with potential for Watson-Crick hydrogen bonding.     

2H-N.M.R. studies of flexibility and orientational order in nematic liquid crystals

Abstract

Deuteron magnetic resonance spectroscopy (²H-N.M.R.) has been used to investigate the effect of the nematic environment on the flexibility and orientational order of two perdeuteriated cyanobiphenyl homologues: 4-methyl-4′-cyanobiphenyl (1CB-d ₁₁) and 4-n-pentyl-4′-cyanobiphenyl (5CB-d ₁₉). The systems studied were low concentrations of 1CB-d ₁₁ and 5CB-d ₁₉ dissolved in the nematic phases of 5CB, N-(-4-ethoxybenzylidene)-4′-n-butylaniline (EBBA), Merck ZLI-1132 (1132) and a 55wt% mixture of 1132: EBBA. The spectra are dramatically different in these environments. Previous studies on small solutes have suggested that in the 55wt% 1132: EBBA mixture (at 301.4 K) the dominant orienting mechanism depends on the size and shape of the molecule which suggests that it is a short range repulsive interaction. This interaction has been modelled by treating the liquid crystal as an elastic continuum and the solute as a collection of van der Waals spheres which stretch the liquid crystal in the two dimensions perpendicular to the director. The distortion of the liquid crystal depends on the dimensions of the solute, and the elastic energy is described in terms of a Hooke's law force constant, k. The model is extended to include flexible liquid crystal molecules and quadrupolar couplings are calculated for each conformation of the 5CB chain. Statistical averaging over all conformations gives an excellent fit to the experimental spectrum. The results for 1CB and 5CB show that in the other nematic phases contributions from additional mechanisms must be included. Previous studies of ²H₂ and other solutes indicate that the additional mechanism is the interaction between the solute molecular quadrupole moment and the mean electric field gradient of the liquid crystal.     

pH-controlled assembly of two new supramolecular hybrid compounds based on Keggin polyoxotungstates

Two supramolecular compounds based on Keggin polyoxotungstates, (4,4′-H₂bpy){[Cu(4,4′-bpy)]₂[SiW₁₂O₄₀]} (1) and (4,4′-H₂bpy)₂[SiW₁₂O₄₀]·2H₂O (2) have been synthesized and characterized by elemental analyses, IR, UV, XPS spectra, TG analyses, and single crystal X-ray diffraction analyses. Compound 1 exhibits an infinite 1-D ladder like structure, which is further interconnected into a 3-D supramolecular framework via hydrogen bonding interactions. Compound 2 contains 4,4′-bipyridine (4,4′-bpy), pseudo-Keggin polyoxoanions [SiW₁₂O₄₀]^4?, and water molecules. Polyoxoanions together with water molecules in 2 construct a 3-D inorganic supramolecular network through O···O and O···Ow(1) interactions. The electrochemical behaviors and photocatalytic properties of 1 and 2 have been investigated.     

Dielectric studies of liquid crystals under high pressure III. Low frequency relaxation process in 4-(trans-4′-n-hexylcyclohexyl)isothiocyanato benzene

Abstract

Dielectric studies of 4-(trans-4′-n-hexylcyclohexyl) isothiocyanatobenzene (6CHBT) were performed in the pressure range 0·1–150 MPa, the frequency range 1 kHz–13 MHz and the temperature range 295–325 K. The temperature and pressure dependencies of the static permittivity ?_0∥ and of the relaxation time τ_∥ are analysed and compared with the analogous data obtained recently for 4-n-pentyl-4′-cyanobiphenyl (5CB) (Parts I and II of this series). Marked differences in the dielectric properties of the nematic phases of the two substances are observed. They are interpreted as a result of varying degrees of molecular association in particular compounds. It is concluded that in the nematic phase of 6CHBT dipole–dipole correlations do not exist or are very weak, whereas for 5CB they are easily broken by a relatively low pressure.     

Hydrogen-bonded liquid crystals built from hydrogen-bonding donors and acceptors. Infrared study on the stability of the hydrogen bond between carboxylic acid and pyridyl moieties

Abstract

The stability of a hydrogen-bonded complex built through inter-molecular hydrogen bonding between carboxylic acid and pyridine fragments has been examined using infrared spectroscopy. Infrared spectra as a function of temperature have been recorded for the 1:1 complex of 4-hexyloxybenzoic acid and trans-4-propoxy-4′-stilbazole from the crystalline state to the isotropic state. A dependence of the stability of the hydrogen bond on molecular orientation is observed clearly in the infrared spectra. The spectra also suggest that the hydrogen bond is an unionized type with a double minimum potential energy.     

Expeditious Synthesis of a Trisubstrate Analogue for α(1→3)Fucosyltransferase

Abstract

The synthesis of cyclohexyl 2-acetamido-2-deoxy-3-O-{2-O-[2-(guanosine 5′-O-phosphate)ethyl]-α-L-fucopyranosyl}-β-D-glucopyranoside (1), a potential inhibitor of α(1→3)fucosyltransferases, is described. Target compound 1 was assembled via fucosylation of cyclohexyl 2-acetamido-2-deoxy-4,6-O-isopropylidene-β-D-glucopyranoside (6) with ethyl 2-O-[2-(benzoylhydroxy)ethyl]-3,4-O-isopropylidene-1-thio-β-L-fucopyranoside (5) followed by debenzoylation, subsequent condensation of the resulting compound with 3′,4′ -di-O-benzoyl-5′ -O-(2-cyanoethyl-N,N-diisopropylphosphoramidite)-2-N-diphenylacetylguanosine (10) and deprotection.     

2‐Amino‐8‐(2‐deoxy‐2‐fluoro‐β‐d‐arabinofuranosyl)imidazo[1,2‐a][1,3,5]triazin‐4(8H)‐one monohydrate,a 2′‐deoxyguanosine analogue with an altered Watson–Crick recognition site

The title compound, C₁₀H₁₂FN₅O₄·H₂O, shows an anti glycosyl orientation [χ = −123.1 (2)°]. The 2‐deoxy‐2‐fluoroarabinofuranosyl moiety exhibits a major C2′‐endo sugar puckering (S‐type, C2′‐endo–C1′‐exo, ²T₁), with P = 156.9 (2)° and τ_m = 36.8 (1)°, while in solution a predominantly N conformation of the sugar moiety is observed. The conformation around the exocyclic C4′—C5′ bond is −sc (trans, gauche), with γ = −78.3 (2)°. Both nucleoside and solvent molecules participate in the formation of a three‐dimensional hydrogen‐bonding pattern via intermolecular N—H...O and O—H...O hydrogen bonds; the N atoms of the heterocyclic moiety and the F substituent do not take part in hydrogen bonding.     

Substrate-induced adjustment of “slipped” π–π stacking: en route to obtain 1D sandwich chain and higher order self-assembly supramolecular structures in solid state

‘Slipped’ π?π stacking between flexible macrocycle 1⁴⁺ (cyclo[2](2,6-di(1H-imidazol-1-yl)pyridine)[2](1,4-dimethylene benzene)) and neutral small molecules induce one-dimensional (1D) ‘sandwich’ chain self-assembly. Unlike most of the reported π?π stacking system, the 1D “sandwich” chain expands with the direction parallel to stacking π surfaces on 1⁴⁺ and that on molecule 2, 3, 4 or 5 (2 = p-xylene, 3 = benzene-1,4-diamine, 4 = 4,4′-bipyridine, 5 = [1,1′-biphenyl]-4,4′-diol). Moreover, the π?π stacking modes of 1D self-assembly are seriously small molecule adduct dependent. Combined with the other weak interactions (e.g. intermolecular hydrogen bonding), the new substrate design and control strategy can expand the 1D ‘sandwich’ chain (e.g. [1⁴⁺·4]_n) into higher order structure (e.g. two-dimensional (2D) network [1⁴⁺·4·6]_n, 6 = hydroquinone) even in large scale (~280 mg). This 2D network structure, which keeps stable under 423 K, shows highly selective gas absorption of CO₂ over N₂.     

Six Coordinate Tris(catecholato)silicates of Primary Amine Residues—Synthesis,Characterization, and Thermolysis Studies. X-Ray Structures of [n-C3H7NH3]2[Si(C6H4O2)3]·1/2(C6H14N2) and of a Bulky Secondary Ammonium Ion, [(i-C4H9)2NH2]2[Si(C6H4O2)3]·H2O

Synthesis of the hypervalent tris(catecholato)silicate ion, [(C₆H₄O₂)₃-Si]^2? having five different primary ammonium cations viz. n-propylammonium (1), isopropylammonium (2) n-butylammonium (3), cyclohexylammonium (4), benzylammonium (5), and a bulky secondary ammonium cation, namely diisobutylammonium (6), have been achieved by the reaction of catechol and tetraethoxysilane (TEOS) in presence of the corresponding amine. Elemental analysis, IR, NMR (¹H, ¹³C, and ²⁹Si), and mass spectral data have been used for their characterization. Single crystal x-ray structures of 1 and 6 indicate nearly same distortion of the “SiO₆” octahedron but interesting differences in the hydrogen bonding interactions arising from the catecholato oxygens and the N—H bonds of the ammonium cations. While compound 1 exhibits hydrogen bonding more discretely and by revealing strong interaction between the n-propylammonium ions, compound 6 shows an extended intermolecular hydrogen bonding aided by a water molecule present in the lattice to lead to infinite one dimensional chain arrangement. TG and EG analyses of compounds, 1–5 indicate 1) the formation of the previously observed spirosilane intermediate, [Si(C₆H₄O₂)₂] and 2) their less thermal stability compared to those having secondary or tertiary ammonium cations.     

Influence of the order parameter and of the director orientation on the surface tension of free nematic films

Abstract

A radial hydrodynamic flow in the nematic phase of free, suspended cylindrical films of 4-n-heptyl- and decyloxybenzoic acid and in 4,4′-di-n-heptyl-oxyazoxybenzene has been observed. The flow starts about 7°C before the phase transition into the smectic C phase. Under the same experimental conditions such a hydrodynamic flow is not established in free nematic films of 4-n-heptyl-and octyloxy-4′-cyanobiphenyl, 4,4′-dimethoxyazoxybenzene and N-(4-ethoxybenzylidene)-4′-n-butylaniline after the completion of the transition from the isotropic liquid to the nematic phase. The observed hydrodynamic flow is explained by a non-linear temperature dependence of the surface tension.     

The nematic-isotropic two phase region in mixtures of quasi-spherical solutes in alkylcyanobiphenyls: An E.S.R. study using tempone as probe

The transitional behaviour of binary mixtures, each containing a non-mesomorphic quasi-spherical solute at a low mole fraction in a nematogenic solvent, has been investigated by E.S.R. spectroscopy using 4-oxo-2,2,6,6-tetramethyl-4-piperidinyl-1-oxy (tempone) as a spin probe. This approach makes use of the smaller coupling constant obtained for the spin probe in the orientationally ordered nematic phase relative to that obtained in the isotropic phase. The solutes included Et₄C (tetraethylmethane) and R ₄Sn (R = C^b2bH₅, n-C_{3 H 7} and nC_b4H₉). The solvents were 4-n-pentyl-4′-cyanobiphenyl (5CB) 4-n-hexyl-4′-cyanobiphenyl (6CB) and 4-n-heptyl-4′-cyanobiphenyl (7CB). This fast approach compares favourably with other studies. In addition it provides the tempone spectral parameter, f, which is a relative measure of the fraction of the nematic phase at different temperatures within the two phase region.     

Dielectric relaxation of liquid crystal molecules in anisotropic confinements

Abstract

The dielectric relaxation of the liquid crystal 4-n-pentyl-4′-cyanobiphenyl (K15) in the presence of an anisotropic network has been studied. Anisotropic networks containing K15 molecules were prepared by in situ polymerisation of liquid-crystalline diacrylate molecules in a mixture containing K15. By changing the network concentration, the effect of the network molecules on the behaviour of the K15 molecules, which were not chemically attached to the network, was investigated. With increasing network concentration it was found that the mean relaxation times of K15 molecules shifted to lower temperatures and that their distribution became broader. The activation energy associated with the relaxation, however, remained almost constant before showing some increase at high network concentrations.     

Chemical constituents from the flowering buds of Bauhinia tomentosa Linn (FBBT)

Isolation and characterisation of compounds, 1-(2′-hydroxy-4′-methoxyphenyl)-3-(4″-methoxyphenyl)-2-hydroxypropane-1,3-dione (1), 5-hydroxyflavone (2), 3,5,7,3′,4′-pentahydroxyflavone (3), 3,5,7,2′,4′-pentahydroxyflavone (4) and 5,7,3′,4′-tetrahydroxyflavone-3-O-rhamnoside (5) are reported from the air dried flowering buds of Bauhinia tomentosa Linn. Their structures are determined on the basis of extensive chemical and spectral evidences. Compound (1) is reported for the first time from the plant source. While compounds (2) and (4) are reported for the first time from this genus, compound (2) is reported for the second time from the natural source.     

Five new cobalt(II) complexes based on indazole derivatives: synthesis,DNA binding and molecular docking study

Five cobalt(II) complexes based on 1H-indazole-3-carboxylic acid (H₂L), [Co(phen)(HL)₂]·2H₂O (1), [Co(5,5′-dimethyl-2,2′-bipy)(HL)₂] (2), [Co(2,2′-bipy)₂(HL)₂]·5H₂O (3), [Co₂(2,9-dimethyl-1,10-phen)₂(L)₂] (4) and [Co₂(6,6′-dimethyl-2,2′-bipy)₂(L)₂]·H₂O (5) (2,2'-bipy = 2,2′-bipyridine, phen = 1,10-phenanthroline), have been synthesized and structurally characterized by elemental analyses, IR and UV-vis spectroscopies and single-crystal X-ray crystallography. The results indicate that 1–3 possess mononuclear Co(II) structures, while 4 and 5 exhibit binuclear structure. 1D water tape which is linked by the multiple hydrogen bonds was embedded in the 3D motif of complex 3. Complexes 4 and 5 show two orthogonal planes of motif that was constituted by phen/2,2′-bipy and indazole acid, respectively. The intermolecular interactions including hydrogen bonding and π-π stacking interactions are stabilizing these complexes. The interactions of the synthesized complexes with calf-thymus DNA (CT-DNA) have been investigated by UV-vis absorption titration, ethidium bromide displacement assay and viscosity measurements. The results reveal that the complexes could interact with CT-DNA via a groove binding mode. Their behavior rationalization was further theoretically studied by molecular docking.