Vibrational overtone spectra of o-fluorophenol and the "anomalous" order of intramolecular hydrogen bonding strengths

The near infrared vibrational overtone absorption spectrum of liquid phase o-fluorophenol is examined in the region deltav=2, 3 and 4. The OH frequencies are compared with that of o-chlorophenol and phenol. Considering the relative electronegativities of all halogens, one might expect the order of intramolecular hydrogen bond strength for o-fluorophenol to be the greatest among all halogenophenols. It is evident that o-fluorophenol forms a weaker intramolecular hydrogen bond (an anomalous trend) contrary to that expected from relative electronegativities of halogens. The local mode mechanical frequency values and anharmonicity values obtained from fitting the overtones are analysed. Our observation is in agreement with the previous experimental as well as the recent theoretical vibrational analysis of halogenophenols using density functional theory (B3LYP). The overtone spectra of o-fluorophenol in carbon tetrachloride in different concentrations are also examined. It is noted that the OH-red shift which arises due to the intermolecular bond formation between the cis and trans conformers of o-fluorophenol (dimerization) increases with concentration.     

Vibrational overtone spectroscopy and intramolecular dynamics of ethene

The first through fourth C-H stretching overtone regions of ethene were measured by photoacoustic spectroscopy of room-temperature molecules and action spectroscopy of jet-cooled molecules. The rotational cooling led to improved resolution in the action spectra, turning these spectra into key players in determining the multiple band appearance in each region, their types, and origins. These manifolds arise from strong couplings of the C-H stretches to doorway states and were analyzed in terms of a simplified joint local-mode/normal-mode (LM)/(NM) model and an equivalent NM model, accounting for principal resonances. The diagonalization of the LM/NM and NM vibrational Hamiltonians and the least-square fittings revealed model parameters, enabling assignment of A- and B-type bands. These bands behave differently through the V = 2-4 manifolds, showing coupling to doorway states for the former but not for the latter. The energy flow out of the fourth C-H overtone is governed by the interaction with bath states due to the increase in the density of states.     

Vibrational spectra of potassium hydrogen 3,4 furandicarboxylate and intramolecular H-bond

I.r. and Raman spectra of potassium hydrogen 3,4 furandicarboxylate are presented. An assignment of the band is proposed and the details of the hydrogen bond bonds are discussed by analogy with potassium hydrogen maleate. Anharmonic coupling between ν_as, OHO and ν_s OHO is found in the combination band at about 1000 cm⁻¹.     

Vibrational spectra of potassium hydrogen 2,3-furandicarboxylate and intramolecular H-bond

Infrared and Raman spectra of KHFur 2,3 and KDFur 2,3 are presented. An assignment of the bands is given which is in good agreement with previous results concerning acid salts possessing intramolecular hydrogen bonds. The ν_as OHO participation was observed at 670 and 520 cm⁻¹, absorption bands of medium intensity. The absence of a more pronounced broadening might be explained by assuming an anharmonic coupling between the ν_as OHO and the ν_s OHO modes, resulting in a combination band at 1000 cm⁻¹.     

Influence of intramolecular hydrogen bonding on OH-stretching overtone intensities and band positions in peroxyacetic acid

Vapor phase absorption spectra and integrated band intensities of the OH stretching fundamental as well as first and second overtones (2ν(OH) and 3ν(OH)) in peroxyacetic acid (PAA) have been measured using a combination of FT-IR and photoacoustic spectroscopy. In addition, ab initio calculations have been carried out to examine the low energy stable conformers of the molecule. Spectral assignment of the primary features appearing in the region of the 2ν(OH) and 3ν(OH) overtone bands are made with the aid of isotopic substitution and anharmonic vibrational frequency calculations carried out at the MP2/aug-cc-pVDZ level. Apart from features associated with the zeroth-order OH stretch, the overtone spectra are dominated by features assigned to combination bands composed of the respective OH stretching overtone and vibrations involving the collective motion of several atoms in the molecule resulting from excitation of the internal hydrogen bonding coordinate. Integrated absorption cross section measurements reveal that internal hydrogen bonding, the strength of which is estimated to be ～20 kJ/mol in PAA, does not result in a enhanced oscillator strength for the OH stretching fundamental of the molecule, as is often expected for hydrogen bonded systems, but does cause a precipitous drop in the oscillator strength of its 2ν(OH) and 3ν(OH) overtone bands, reducing them, respectively, by a factor of 165 and 7020 relative to the OH stretching fundamental.     

Vibrational overtone spectra of N-H stretches and intramolecular dynamics on the ground and electronically excited states of methylamine

The vibrational pattern and energy flow in the N-H stretch manifolds and the dissociation dynamics of methylamine (CH(3)NH(2)) were investigated via vibrationally mediated photodissociation. Action spectra and Doppler profiles, reflecting the yield of the ensuing H photofragments, versus near infrared/visible vibrational excitation and UV excitation, respectively, were measured. The jet-cooled action spectra and the simultaneously measured room temperature photoacoustic spectra of the first to third N-H stretching overtones exhibit broad features, somewhat narrower in the former, consisting of barely recognized multiple bands. Two phases of fitting of the spectroscopic data were performed. In the first phase, the raw data were analyzed to obtain band positions, types, intensities, and transition linewidths. In the second, the information derived from the first phase was then used as data in a fit to joint local mode/normal mode (LM/NM) and NM Hamiltonian parameters. The derived parameters predicted well band positions and allowed band assignment. The LM/NM Hamiltonian and the extracted Lorentzian linewidths enabled the determination of the initial pathways for energy redistribution and the overall temporal behavior of the N-H stretch and doorway states, as a result of Fermi couplings and interactions with bath states. The results indicate a nonstatistical energy flow in the V=2 manifold region, pointing to the dependence of the coupling on specific low order resonances rather than on the total density of bath states. The Doppler profiles suggest lower average translational energies for the released H photofragments, in particular, for V=3 and 4 as compared to V=1 and 2, implying a change in the mechanism for bond cleavage.     

Normal coordinate analysis of bilirubin vibrational spectra: Effects of intramolecular hydrogen bonding

Normal coordinate analyses are presented for half-bilirubin molecules. Calculations for the AB pyrromethenone include intramolecular hydrogen bonds, while those for the CD chromophore exclude intramolecular hydrogen bonds. Valence force-field parameters have been optimized to correlate closely with the IR and Raman spectra of the target molecules. The results of the calculations are compared with the spectra of bilirubin IXa and various model compounds in the solid state and solution.     

Vibrational spectra, structure and hydrogen bonding of 5-tert-butylpyrazole and its zinc complexes

New zinc complexes [L₂ZnX₂] with X=Cl (I), Br (II), I (III) and NO₃ (IV), [L₃Zn(OClO₃)]ClO₄ (V) and [L₄Zn](ClO₄)₂ (VI) with 5-tert-butylpyrazole as ligand L were synthesized and characterized by infrared-, Raman-, mass- and NMR-spectroscopy. The assignment of the vibrational frequencies for the complexes in the range of 4000–80 cm⁻¹ is proposed. Analysis of the IR spectra in the range of ν_NH frequencies shows that 5-tert-butylpyrazole forms cyclic associates in the solid using intermolecular NHN hydrogen bonds. This was proven by a crystal structure determination, which showed that L exists as tetramers in the solid state. In solution there is an equilibrium between tetramers and monomers and, probably, dimers or trimers. In the complexes, the NH-groups of L form intramolecular H-bonds with the X-group. The intramolecular H-bond in VI has interionic character and partially dissociates in solution at high dilution. Ligand vibrations that are sensitive to the coordination and the dependence of their frequencies on the anionic group X has been revealed.     

Evidence for strong intramolecular hydrogen bonding in some quinoline derivatives

Several analogues of quinoline-8-carboxamide were examined by ¹H NMR and IR in order to establish structural requirements for strong intramolecular hydrogen bonding.     

Evidence for a blue-shifting intramolecular hydrogen bond in the vibrational overtone spectrum of 1H-nonafluorobutane

We demonstrate that the gauche conformation of 1H-nonafluorobutane contains a blue-shifting intramolecular hydrogen bond by recording its 5th overtone spectrum with cavity ringdown spectroscopy and performing electronic structure calculations. The magnitude of the blue-shift is enhanced in the overtone spectrum as compared to the fundamental. The energy difference between the gauche conformer and the lowest energy zigzag conformer is calculated to be 288 cm⁻¹ using density functional theory and determined to be 280 ± 30 cm⁻¹ using temperature-dependent FTIR measurements. The –H⋯F– bonding interaction in the gauche conformer leads to changes in bond lengths as compared to the non-hydrogen bonded conformers.     

Vibrational overtone activation of methylcyclopropene

The vibrational overtone spectrum of methylcyclopropene in the region of the 6-0 and 5-0 C---H stretching transitions is reported. Transitions corresponding to the methyl, methylenic and vinyl C---H stretches are assigned. From the Birge-Sponer plots the anharmonicities and mechanical frequencies for the methyl in-plane and out-of-plane C---H stretches are −67.0 and 3118.0 cm⁻¹ and −64.0 and 3071.0 cm⁻¹, respectively. The corresponding values for the methylenic C---H stretches are −60.5 and 3030.7 cm⁻¹. Photolysis at 17093 cm⁻¹ (585 nm) yields two stable products which were identified by gas chromatography. Approximately 60% of the total yield was 2-butyne. A specific rate constant of 1.66×10⁸ s⁻¹ results from the Stern-Volmer analysis of the product yield of 2-butyne.     

Vibrational and NMR spectra of mono- and di-chlorothiolacetic acids in relation to rotational isomerism and hydrogen bonding

The vibrational spectra of mono- and di-chlorothiolacetic acids have been measured in liquid and gaseous states and solutions, and vibrational assignments have been proposed. The experimental material shows that these molecules are present as a mixture of two rotational isomers. The energy of the two isomers in the liquid state is almost the same.     

Vibrational study of the secondary thioamide function,the intramolecular resonance assisted and intermolecular hydrogen bonding in NN'-hydroxyalkyl dithiooxamides

The article describes the vibrational characterization of the secondary thioamide formation and especially a spectroscopical interesting study of different types of hydrogen bonding in NN'-dihydroxyalkyldithiooxamides.     

Proton magnetic resonance spectra and the intramolecular hydrogen bonding of o-alkoxy- phenols and -benzenethiols

The PMR spectra of several methoxy substituted benzenethiols and related phenols have been examined in various solvents over a wide range of concentrations. The positions of the sulfhydryl proton resonance signals (δ_SH) of o-methoxybenzenethiol and 2,6-dimethoxybenzenethiol in inert solvents, and the δ_SH values of the thiols carrying o-OMe groups are less affected by the interaction with the solvents than those without o-OMe groups. The significant differences in the behaviour of chemical shifts of these compounds have been best interpreted by the intramolecular S---HO H-bonding. Additional evidence for the intramolecular H-bonding in o-OMe substituted benzenethiols have been obtained from the IR spectroscopic data.     

Vapor pressure and intramolecular hydrogen bonding in fluorotelomer alcohols

Vapor pressure and aqueous solubility are important parameters used to estimate the potential for transport of chemical substances in the atmosphere. For fluorotelomer alcohols (FTOHs), currently under scrutiny by environmental scientists as potential precursors of persistent perfluorocarboxylates (PFCAs), vapor pressure is the more significant property since these compounds are only very sparingly soluble in water. We have measured the vapor pressures of a homologous series of fluorotelomer alcohols, F(CF2CF2)nCH2CH2OH (n = 2-5), in the temperature range 21-250 degrees C by three independent methods: (a) a method suitable for very low vapor pressures at ambient temperatures (gas-saturation method), (b) an improved boiling point method at controlled pressures (Scott method), and (c) a novel method, requiring milligram quantities of substance, based on gas-phase NMR, a technique largely unfamiliar to chemists and holding promise for studies of relevance to environmental chemistry. The concordant values obtained indicate that recently published vapor pressure data overestimate the vapor pressure at ambient temperature, and therefore the volatility, of this series of fluorinated compounds. It was suggested that substantial intramolecular -O-H...F- hydrogen bonding between the hydroxylic proton and the two fluorines next to the ethanol moiety was responsible for their putative high volatility. Therefore, we have used gas-phase NMR, gas-phase FTIR, 2D NMR heteronuclear Overhauser effect measurements, and high-level ab initio computations to investigate the intramolecular hydrogen bonding in fluorotelomer alcohols. Our studies unequivocally show that hydrogen bonding of this type is not significant and cannot contribute to and cause unusual volatility. The substantially lower vapor pressure at ambient temperatures than previously reported resulting from our work is important in developing a valid understanding of the environmental transport behavior of this class of compounds.     

Vibrational spectra, co-operative intramolecular hydrogen bonding and conformations of calix[4]arene and thiacalix[4]arene molecules and their para-tert-butyl derivatives

The IR and Raman spectra and conformations of calix[4]arene, thiacalix[4]arene and their p-tert-butyl derivatives have been analysed within the framework of scaled quantum mechanics (SQM). It is shown that the introduction of four p-tert-Bu groups into the calixarene molecules influences the relative energies of their conformers and the enthalpy of the cooperative intramolecular H-bonding (DeltaH(intra)) almost negligibly. DeltaH(intra), evaluated from Iogansen's rule, amounts to approximately 26-28 kcal mol(-1) for the calixarenes and approximately 20-21 kcal mol(-1) for the thiacalixarenes, which essentially exceeds the enthalpies of non-cooperative H-bonds formed by related phenols. As a result of this strong bonding, bands of stretching, bending and torsion vibrations of an eight-membered cyclic system (OH...)4 arise, e.g., two delta(OH)4 bands are observed in the IR spectra of the most highly symmetric C4 cone conformations of calix[4]arene and thiacalix[4]arene. The "duplication" of the number of OH infrared bands is a good new indicator of cooperativity of intramolecular H-bonding of the calixarenes.     

Preorganization-enhanced halogen bonding via intramolecular hydrogen bonding: a theoretical study

Structural Chemistry - Cationic and neutral halogen bonding (XB) donors use two types (I and II) of intramolecular hydrogen bonding (HB) to preorganize structures and increase the efficiency of...