ISOLATION,CHARACTERIZATION AND RECONSTITUTION OF PHYCOBILIPROTEIN ROD-CORE LINKER POLYPEPTIDE COMPLEXES FROM THE PHYCOBILISOME OF Mastigocladus laminosus*

A rod-core complex, (αβ)₆^PC. L_RC^29.5,(αβ)₃^APC.L_C^8.9, composed of hexameric phycocyanin (PC) and trimeric allophycocyanin (APC) subcomplexes associated to the CpcG2 gene product, has been isolated from the phycobilisome of Mastigocladus laminosus. Exactly the same complex was obtained by reconstitution using the subcomplexes(αβ)₃^PC. L_RC 29.5 and (aβ)₃^APC.L_C^8.9 as educts. Spectroscopic analysis of the isolated PC-L_R and PC-L_RC complexes from M. laminosus shows that the L_RC cause the largest red-shift in the absorbance and fluorescence emission maxima of PC. These results indicate that L_RC mediate PC-APC interactions in vitro. Only the CpcG2 polypeptide was able to promote this specific interaction, as neither CpcG3-PC nor, as a negative control, CpcC-PC complexes showed any reconstitution products with the core subcomplex (αβ)₃^APC.L_c^8.9. This is an indication that each of the four L_RC in the phycobilisomes of M. laminosus and Anabaena sp. PCC 7120 attaches two peripheral rods specifically to one of four different core binding sites.     

Clarifying and illustrating the electronic energy transfer pathways in trimeric and hexameric aggregation state of cyanobacteria allophycocyanin within the framework of Förster theory

Within the framework of the Förster theory, the electronic excitation energy transfer pathways in the cyanobacteria allophycocyanin (APC) trimer and hexamer were studied. The associated physical quantities (i.e., excitation energy, oscillator strength, and transition dipole moments) of the phycocyanobilins (PCBs) located in APC were calculated at time‐dependent density functional theory (TDDFT) level of theory. To estimate the influence of protein environment on the preceding calculated physical quantities, the long‐range interactions were approximately considered with the polarizable continuum model at the TDDFT level of theory, and the short‐range interaction caused by surrounding aspartate residue of PCBs were taken into account as well. The shortest energy transfer time calculated in the framework of the Förster model at TDDFT/B3LYP/6–31+G* level of theory are about 0.10 ps in the APC trimer and about 170 ps in the APC monomer, which are in qualitative agreement with the experimental finding that a very fast lifetime of 0.43–0.44 ps in APC trimers, whereas its monomers lacked any corresponding lifetime. These results suggest that the lifetime of 0.43–0.44 ps in the APC trimers determined by Sharkov et al. was most likely attributed to the energy transfer of α¹‐84 ? β³‐84 (0.23 ps), β¹‐84 ? α²‐84 (0.11 ps) or β²‐84 ? α³‐84 (0.10 ps). So far, no experimental or theoretical energy transfer rates between two APC trimmers were reported, our calculations predict that the predominate energy transfer pathway between APC trimers is likely to occur from α³‐84 in one trimer to α⁵‐84 in an adjacent trimer with a rate of 32.51 ps. © 2014 Wiley Periodicals, Inc.     

TWO DIFFERENT TYPES OF PHOTOCHEMISTRY IN PHYCOERYTHROCYANIN α-SUBUNIT*

The photochemical activities of phycoerythrocyanin α-subunits from Mastigocladus laminosus separated by isoelectric focusing were tested by irradiating at 500, 550, 577 and 600 nm. Two types of photoreversible photochromic responses have been characterized by absorption and absorption difference spectroscopy. Type I is the well-known absorption shift from 571 to 506 nm. Type II is a new response characterized by a line-broadening of the 570 nm absorption.     

Multiply Twisted Chiral Macrocycles Clamped by Tethered Binaphthyls Exhibiting High Circularly Polarized Luminescence Brightness

Chiral macrocyclic dimers, trimers, and tetramers composed of paraphenylene and tethered binaphthyl were synthesized, and their molecular structures and chiroptical properties were investigated. X-ray analysis and theoretical calculations revealed that multiple twisted molecular structures – dimers, trimers, and tetramers – adopt figure-of-eight, Möbius triangle, and concave rectangle structures, respectively. These homologues have large ϵ values in their UV-vis absorption spectra because of the π-conjugation of the naphthalene-phenylene-naphthalene frameworks. Owing to the shape-persistent ring structure and tethering with −OCH₂CH₂O−, high fluorescence quantum yields and a relatively high dissymmetry factor g_CPL in circularly polarized luminescence (CPL) spectra were achieved. This results in CPL brightness (B_CPL) of over 100, which is greater than that of the conventional organic CPL dye.     

RESONANCE-ENHANCED CARS SPECTROSCOPY OF BILIPROTEINS. INFLUENCE OF AGGREGATION and LINKER PROTEINS ON CHROMOPHORE STRUCTURE IN ALLOPHYCOCYANIN (Mastigocladus laminosus)

Abstract— Resonance-enhanced coherent anti-Stokes Raman spectra (CARS) are reported for monomers and for trimers with and without linker proteins of allophycocyanin isolated from Mastigocladus laminosus. The CARS spectrum of the monomer is independent of the presence of linker proteins and is very similar to that of phycocyanin monomers indicating that the equivalent chromophores exhibit like structures in both biliproteins. Large differences are, however, observed between the spectra of phycocyanin trimers and those of allophycocyanin trimers with or without linker proteins (L_c^8,9). The observed differences between monomer and trimer spectra are consistent with a change of the α-chromophore-protein arrangement upon aggregation without linker. If linker proteins are present in the trimer, then additional geometry changes of the β-chromophores are induced; these could relate to a transition from the 15Z- anti to 15Z- syn conformation.     

TEMPERATURE DEPENDENCE OF CHLOROPHYLL FLUORESCENCE FROM THE LIGHT HARVESTING COMPLEX II OF HIGHER PLANTS

Abstract— Chlorophyll fluorescence spectra of LCHII, the light harvesting complex of photosystem II, have been recorded in the aggregated and trimeric forms for a range of temperatures from 293 to 4 K. At least five long-wavelength emitters in the 682–702 nm region with different temperature dependencies were found in the spectra of the aggregates. At 293 K the yield of LCHII trimers was higher than aggregates by a factor of 4, but, upon lowering the temperature, a fluorescence rise was observed which was much stronger for LCHII aggregates than for LCHII trimers, so that at 4 K their yields were comparable. The implications of these data in terms of the function of LCHII are discussed.     

Quenching of chlorophyll a singlets and triplets by carotenoids in light-harvesting complex of photosystem II: comparison of aggregates with trimers

Laser-induced changes in the absorption spectra of isolated light-harvesting chlorophyll a/b complex (LHC II) associated with photosystem II of higher plants have been recorded under anaerobic conditions and at ambient temperature by using multichannel detection with sub-microsecond time resolution. Difference spectra (ΔA) of LHC II aggregates have been found to differ from the corresponding spectra of trimers on two counts: (i) in the aggregates, the carotenoid (Car) triplet–triplet absorption band (ΔA>0) is red-shifted and broader; and (ii) the features attributable to the perturbation of the Q_y band of a chlorophyll a (Chla) by a nearby Car triplet are more pronounced, than in trimers. Aggregation, which is known to be accompanied by a reduction in the fluorescence yield of Chla, is shown to cause a parallel decline in the triplet formation yield of Chla; on the other hand, the efficiency (100%) of Chla-to-Car transfer of triplet energy and the lifetime (9.3 μs) of Car triplets are not affected by aggregation. These findings are rationalized by postulating that the antenna Cars transact, besides light-harvesting and photoprotection, a third process: energy dissipation within the antenna. The suggestion is advanced that luteins, which are buried inside the LHC II monomers, as well as the other, peripheral, xanthophylls (neoxanthin and violaxanthin) quench the excited singlet state of Chla by catalyzing internal conversion, a decay channel that competes with fluorescence and intersystem crossing; support for this explanation is presented by recalling reports of similar behaviour in bichromophoric model compounds in which one moiety is a Car and the other a porphyrin or a pyropheophorbide.     

Synthesis and characterization of fluorene‐based oligomers and polymers incorporating N‐arylphenothiazine‐S,S‐dioxide units

A series of 3,7‐bis(9,9‐di‐n‐hexylfluoren‐2‐yl)‐N‐arylphenothiazine‐S,S‐dioxide trimers and (9,9‐di‐n‐octylfluorene‐2,7‐diyl‐co‐N‐arylphenothiazine‐S,S‐dioxide) co‐polymers, with varying ratios of phenothiazine‐S,S‐dioxide units, have been prepared in good yields by palladium‐catalyzed cross‐coupling reactions. The materials are deep blue emitters and show no solvatochromism or evidence for an intramolecular charge‐transfer state. The photoluminescence quantum yields of the trimers are ?_PL 15–30% in solution and 14–25% in films. The polymers demonstrated very high values in solution (?_PL 74–84%) and ?_PL values in films of 28–47%. The estimated HOMO energy levels are between ?5.64 and ?5.62 eV for the polymers with 15% incorporation of the phenothiazine‐S,S‐dioxide units. An analogous N‐arylphenothiazine co‐polymer shows significantly red shifted absorption and emission. Solution electrochemical data and density functional theory calculations are also presented. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Improved Large‐Scale Liquid‐Phase Synthesis and High‐Temperature NMR Characterization of Short ­(F‐)PNAs

We report on a large‐scale synthesis of F‐PNA trimer 10 and PNA trimer 11 . The key improvement is the facile two‐step synthesis of (2,4‐difluoro‐5‐methylphenyl)acetic acid ( 2 ). Water solubility of the corresponding F‐PNA oligomer 10 was achieved by synthesizing solubility enhancer 5a , which is twofold positively charged and only consists of inherent structural elements of PNA. Protected and unpaired PNA n‐mers exist in a mixture of 2ⁿ conformers undergoing slow exchange and leading to complicated NMR spectra. Structure analysis was improved by recording ¹H‐ and ¹³C‐NMR spectra at elevated temperatures above the coalescence point. Fully protected backbone derivatives show sharp resonances where expected, and spectra of protected PNAs are remarkably simplified, thereby allowing an interpretation for the first time. Both trimers 10 and 11 are considered as building blocks for a self‐replicating system based on PNA.     

Density Functional Theory Study on (Cl2GaN3)n(n=1–4) Clusters

The molecular geometries, vibrational properties, and thermodynamic properties of the clusters (Cl₂GaN₃)_n(n=1–4) have been predicted at the B3LYP/6‐311+G* level. The optimized clusters (Cl₂GaN₃)_n (n=2–4) all possess cyclic structures containing Ga N_α Ga linkages. The relationships between geometrical parameters and oligomerization degree n are discussed. The gas‐phase structures of the trimers prefer to exist in boat‐twisting conformation. As for the tetramer, the S₄ symmetry structure is the most stable. The infrared spectra are obtained and assigned by vibrational analysis. Thermodynamic properties derived from the infrared spectra on the basis of statistical thermodynamic principles are linearly correlated with the oligomerization degree n as well as the temperature. Meanwhile, thermodynamic analysis of the gas‐phase reaction suggests that the oligomerization is exothermic and favorable under high temperature.     

Structural stability of poly(1-propyne) dimers and trimers

The relative thermodynamic energies of the poly(1-propyne) dimers and trimers show that both the conjugation and steric forces play an important role on the structural stability of these molecular systems. The two 1,4-disubstituted butenyne cis and trans dimers are predicted to be practically the same in energy, whereas the 2,4-disubstituted butenyne dimer is of relatively lower thermodynamic stability. The trimers, cis-trans (structure 4) and trans-trans (structure 10), are calculated to be relatively stable, and thus it is more likely that the polymer formation is based on these two trimers with the tail-head-tail-head addition. © 1996 John Wiley & Sons, Inc.     

FAR-INFRARED SPECTRA OF LANGMUIR-BLODGETT FILMS OF CHLOROPHYLL a,CHLOROPHYLL b,PHEOPHYTIN a and THEIR ADDUCTS WITH WATER and DIOXANE*

Fourier transform infrared spectra in the low frequency region (500–150cm^?1) of Langmuir-Blodgett films of chlorophyll a (Chi a), chlorophyll b (Chi b) and pheophytin a have been studied. Correlations between spectral changes in monolayer and multilayers of Chi a and Chi b and their adducts with water and dioxane have been established. Spectroscopic evidence has indicated that, although there are no individual absorption bands that can be assigned to pure Mg-nitrogen and/or Mg-oxygen stretching or bending modes, there are several bands in the400–200 cm^?1 region of the spectra containing considerable contributions from metal-nitrogen and metal-oxygen vibrational modes. These specific vibrations exhibit marked intensity changes and shifts upon water and dioxane interaction. The different states of chlorophyll aggregation in Langmuir-Blodgett mono- and multilayers films resulted in noticeable changes in their far-IR spectra.     

Effects of combining of different flexible spacers in liquid crystal trimers and tetramers on transition properties

Liquid crystal trimers and tetramers containing two kinds of flexible spacers, namely O(CH₂) _m O and COO(CH₂) _n O, were divided into four classes according to the odd/even nature of the number of atoms in the flexible spacers: specifically, even–even, odd–odd, even–odd, and odd–even trimers, and even–even–even, odd–odd–odd, odd–even–odd, and even–odd–even tetramers. The transition properties of the four types of trimers and of tetramers were compared. Although the nematic–isotropic transition temperature and the associated entropy changes were primarily related to the number of the even-membered flexible spacers in these molecules, the different combinations of the flexible spacers significantly affected their transition properties.     

Order–Disorder Transitions in Model Liquids of Mesogenic Trimers

Monte Carlo simulations have been performed for realistically dense liquids of model trimers consisting of rigid cores connected by virtual bonds representing semiflexible spacers. The conformational characteristics of the trimers are approximately regulated in two cases to mimic (CH₂)_n spacers with n odd or even. All simulated systems undergo reversible isotropic–nematic phase transitions at well defined temperatures, showing odd–even oscillations in good agreement with experiments. The transitions are coupled with a conformational selection favoring extended conformations in the nematic liquids. The odd–even oscillations and the conformational distribution in the nematic liquids are fully explained on the basis of the intrinsic conformational characteristics of the model trimers.     

Das unterschiedliche massenspektrometrische Fragmentierungsverhalten von Lysinmethylester und dessen N,N′-Diacetylderivat. 27. Mitteilung über das massenspektrometrische Verhalten von Stickstoffverbindungen

The Different Behaviour of Lysine Methyl Ester and its N,N′-Diacetyl Derivative under Electron Impact The base peak in the spectrum of lysine methyl ester is due to the fragment ion C₅H₁₀N (m/e 84), for which the cyclic structure g (Scheme 1) is deduced. During its formation from the [M-COOCH₃]-ion an equilibration of both nitrogen atoms takes place (ion c , Scheme 1). The cyclic nature of ion m/e 84 is in agreement with the intensity of the corresponding ions in the spectra of homologues of lysine methyl ester (Fig. 1). Although in comparison with lysine methyl ester ( 1 ) N,N′-diacetyl-lysine methyl ester ( 7 ) shows the same general fragmentation pathway with formation of the ions [M-COOCH₃] and [M-COOCH₃-H₂NCOCH₃] (m/e 126), the exact fragmentation mechanism proves to the different. Two mechanisms are discussed for the formation of the ion m/e 126 from 7 (Schemes 2 and 3). The results are based on the spectra of labelled derivatives.     

NEW CYCLIC AND POLYMERIC PHOSPHAZENES DERIVED FROM N-SILYLPHOSPHORANIMINES

Silicon-nitrogen-phosphorus compounds of the type Me ₃ SiN═PR(R′)X(X= Cl, Br, OCH₂CF ₃ , OPh), known as N-silylphosphoranimines,are useful precursors to both cyclic and polymeric phosphazenes.Depending on the leaving group (X), thermolysis reactions afford either cyclic trimers, [N═PR(R′)] ₃ (when X = Cl, Br), or linear polymers,[N═PR(R′)]_n (when X = OCH ₂ CF ₃ or OPh). Treatment of the P-trifluoroethoxy and P-phenoxy derivatives, Me ₃ SiN═PR(R′)X (X = OCH ₂ CF ₃ , OPh), with alcohols at lower temperature usually results in the formation of cyclic phosphazene trimers via silyl ether elimination. Recently, we have applied these synthetic methods to the preparation of some new phosphazene systems including a series of 4-aryl-functionalized trimers and polymers and a variety of non-geminal, mixed-substituent cyclic trimers. Representative examples of the synthesis, structural characterization, and reactivity of these new phosphazenes and their Si─N─P precursors are reported here.     

Resonance-Enhanced CARS Spectroscopy of Biliproteins: a Comparison Between Phycoerythrocyanin and Phycocyanin of Mastigocladus laminosus

Abstract— Resonance-enhanced coherent anti-Stokes Raman (CARS) spectra are reported for trimers of phycoerthrocyanin (PEC) dissolved in H₂O and D₂O. The CARS spectra are significantly different when recorded with pump wavelength either at 585 nm or 630 nm. By comparison of the 630 nm spectra with those of phycocyanin one can conclude that there is a change in the relative location of the lowest excited states of the β84 and β155 chromophores. Upon additional illumination with 514.5 nm laser light, only the spectra recorded with 585 nm pump wavelength change. This is in accordance with earlier observations that the phycoviolobilin chromophore of the a-subunit exhibits photochromic behavior. The changes in the CARS spectra provide evidence that it is the methine bridge between rings C and D that undergoes the geometrical changes. Furthermore, it is suggested that there are different types of photoinduced rearrangements operative and that the isomeric distribution is different in H₂O and D₂O.     

SYNTHESIS OF MELEZITOSE DERIVATIVES

The reactivity of melezitose hydroxyls is studied during tritylation in pyridine. Some novel derivatives of melezitose are prepared. An acetyl is transferred from the 4- to the 6-position after detritylation of 3 and 4. The structures of the products are proved by elemental analysis; ¹ H, ¹³ C, and ¹ H- ¹ H COSY NMR spectra;IR spectra; and fast-atom bombardment mass spectrometry.     

Oligomeric liquid crystals: From monomers to trimers

A homologous series of linear liquid crystal trimers, the 4,4′-bis[ω-(4-methoxyazobenzene-4′-yloxy)alkoxy]azobenzenes, has been synthesized and characterized. The transitional properties of the trimers are compared with those of the corresponding series of dimers, the α,ω-bis(4-methoxyazobenzene-4′-oxy)alkanes, and monomers, the 4-methoxy-4′-alkoxyazobenzenes. Characteristically pronounced odd-even effects were seen for the transitional properties of both dimers and trimers on varying the spacer lengths. The clearing temperatures of the trimers were higher than those of the corresponding dimers, but as the length of the flexible spacers was increased this difference became rather small. The ratios of T _NI, and ΔS _NI/R for monomer:dimer and dimer:trimer are discussed. These are very similar to reported values for similar materials, suggesting that there may be a rather general relationship between the transitional properties of liquid crystal oligomers as the number of mesogenic units is increased.