Probing the interaction of the potassium channel modulating KCNE1 in lipid bilayers via solid‐state NMR spectroscopy

KCNE1 is known to modulate the voltage‐gated potassium channel α subunit KCNQ1 to generate slowly activating potassium currents. This potassium channel is essential for the cardiac action potential that mediates a heartbeat as well as the potassium ion homeostasis in the inner ear. Therefore, it is important to know the structure and dynamics of KCNE1 to better understand its modulatory role. Previously, the Sanders group solved the three‐dimensional structure of KCNE1 in LMPG micelles, which yielded a better understanding of this KCNQ1/KCNE1 channel activity. However, research in the Lorigan group showed different structural properties of KCNE1 when incorporated into POPC/POPG lipid bilayers as opposed to LMPG micelles. It is hence necessary to study the structure of KCNE1 in a more native‐like environment such as multi‐lamellar vesicles. In this study, the dynamics of lipid bilayers upon incorporation of the membrane protein KCNE1 were investigated using ³¹P solid‐state nuclear magnetic resonance (NMR) spectroscopy. Specifically, the protein/lipid interaction was studied at varying molar ratios of protein to lipid content. The static ³¹P NMR and T₁ relaxation time were investigated. The ³¹P NMR powder spectra indicated significant perturbations of KCNE1 on the phospholipid headgroups of multi‐lamellar vesicles as shown from the changes in the ³¹P spectral line shape and the chemical shift anisotropy line width. ³¹P T₁ relaxation times were shown to be reversely proportional to the molar ratios of KCNE1 incorporated. The ³¹P NMR data clearly indicate that KCNE1 interacts with the membrane. Copyright © 2017 John Wiley & Sons, Ltd.     

Generation of radical species on polypropylene by alkylborane‐oxygen system and its application to graft polymerization

Graft polymerization of ethyl acrylate and n‐butyl acrylate onto surface of polypropylene (PP) beads (diameter: 3.2 mm) were carried out by using a redox system composed of triethylborane (Et₃B) and molecular oxygen in air. The amounts of the grafted polymers increased by prolonging a period of soaking PP beads in a solution of Et₃B in hexane, a less polar solvent of which affinity with PP would be higher than that of tetrahydrofuran, a highly polar solvent. These results implied that the present graft polymerization involved: (1) interpenetration of Et₃B into the surface area with the aid of hexane as a solvent, (2) its aerobic oxidation to generate a radical species, (3) abstraction of proton from PP by the radical species, and (4) initiation of polymerization from the resulting radical on the PP surface. Besides the acrylates, acrylic acid, and glycidyl methacrylate were also grafted onto the surface of PP to endow it with carboxyl and epoxy moieties, respectively. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 6163–6167, 2009     

Multidimensional solid‐state NMR studies of the structure and dynamics of pectic polysaccharides in uniformly 13C‐labeled Arabidopsis primary cell walls

Plant cell wall (CW) polysaccharides are responsible for the mechanical strength and growth of plant cells; however, the high‐resolution structure and dynamics of the CW polysaccharides are still poorly understood because of the insoluble nature of these molecules. Here, we use 2D and 3D magic‐angle‐spinning (MAS) solid‐state NMR (SSNMR) to investigate the structural role of pectins in the plant CW. Intact and partially depectinated primary CWs of Arabidopsis thaliana were uniformly labeled with ¹³C and their NMR spectra were compared. Recent ¹³C resonance assignment of the major polysaccharides in Arabidopsis thaliana CWs allowed us to determine the effects of depectination on the intermolecular packing and dynamics of the remaining wall polysaccharides. 2D and 3D correlation spectra show the suppression of pectin signals, confirming partial pectin removal by chelating agents and sodium carbonate. Importantly, higher cross peaks are observed in 2D and 3D ¹³C spectra of the depectinated CW, suggesting higher rigidity and denser packing of the remaining wall polysaccharides compared with the intact CW. ¹³C spin–lattice relaxation times and ¹H rotating‐frame spin–lattice relaxation times indicate that the polysaccharides are more rigid on both the nanosecond and microsecond timescales in the depectinated CW. Taken together, these results indicate that pectic polysaccharides are highly dynamic and endow the polysaccharide network of the primary CW with mobility and flexibility, which may be important for pectin functions. This study demonstrates the capability of multidimensional SSNMR to determine the intermolecular interactions and dynamic structures of complex plant materials under near‐native conditions. Copyright © 2012 John Wiley & Sons, Ltd.     

Following the Crystallization Process of Polyethylene Single Chain by Molecular Dynamics: The Role of Lateral Chain Defects

Summary: Langevin molecular dynamics (LMD) simulations have been performed in order to understand the role of the short chain branches (SCB) on the formation of ordered domains by cooling ethylene/α-olefins single chain models. Different long single-chain models (C₂₀₀₀) with 0, 5 and 10 branches each 1000 carbons were selected. The branches were randomly distributed along the backbone chain. Furthermore, C₁ (methyl) and C₄ (butyl) branches were taken into account. These models mimic the molecular architecture of ethylene/1-butene and ethylene/1-hexene random copolymers. The simulations are performed according to the following protocol: 20 random chain conformations for each model were equilibrated at high temperature (T* = 13.3) and then they were cooled in steps of 0.45 until the final temperature (T* = 6.2) by running a total of 35 × 10⁶ LMD steps. The distribution peaks of crystallization for each model were calculated by differentiating the global order parameter with respect to the temperature. The Tc* (crystallization temperature) decrease as the number of branches increases as it is experimentally observed. The formation of order in the copolymers is affected by the type and amount of the SCB in the backbone of the polymer chain. The stem lenght and crystallization fraction (α) were defined using the local-bond order parameter. Both parameters decrease as the number of branches increase. In all cases here shown, the C₄ branches are excluded from the ordered domains. However, we have observed that the methyl branch can be incorporated into the ordered regions. These facts satisfactorily agree with experimental data available in the literature.     

Solid‐state 119Sn NMR and antitumor activity of bis [1,3‐bis (3‐oxapentamethylenecarbamoylthioacetato)‐1,1,3,3‐tetrabutyl‐1,3‐distannoxare], and the crystal structure of its bis‐ethanol solvate

The ¹¹⁹Sn cross polarization‐magic angle spinning NMR spectrum of bis[1,3‐bis(3‐oxapentamethylenecarbamoylthioacetato)‐1,1,3,3‐tetrabutyl‐1,3‐distannoxane], {[(C₄H₉)₂SnO₂CCH₂SC(O)N(CH₂CH₂)₂O]₂O}₂, which consists of two resonances of similar chemical shifts and symmetry (δ_iso = −152, −202 ppm; asymmetry, κ = 0.38), implies the existence of two five‐coordinate tin sites in the centrosymmetric dimer. The assignment has been corroborated by X‐ray diffraction analysis on the compound that has been crystallized from ethanol; the crystal structure shows two tin atoms in cis‐C₂SnO₃ trigonal‐bipyramidal coordination [C‐Sn‐C = 131.5(1), 131.3(2) °]. The analysis also reveals the presence of two lattice ethanol molecules that are hydrogen‐bonded to the dimer [OO = 2.779(5) Å]. When exposed to air, the distannoxane loses ethanol. The unsolvated distannoxane is more active than cis‐platin when screened against MCF‐7 (mammary cancer), EVSA‐T (mammary cancer), WiDr (colon cancer), IGROV (ovarian cancer), M19 MEL (melanoma), A498 (renal cancer) and H226 (lung cancer) cell lines. Copyright © 2000 John Wiley & Sons, Ltd.     

An NMR investigation on the phase structure and molecular mobility of the novel exfoliated polyethylene/palygorskite nanocomposites

Novel exfoliated polyethylene (PE)/palygorskite nanocomposites prepared by in situ polymerization are characterized by solid‐state nuclear magnetic resonance (NMR). The phase structure and molecular mobility are investigated by a combination of proton and carbon NMR. The results showed that incorporation of small amounts of palygorskite had great influence on the phase structure and molecular mobility. The incorporated palygorskite hindered the crystallization process and introduced motion‐hindered chains in the NMR crystalline and amorphous phase. ¹³C cross‐polarization and magic‐angle spinning NMR revealed two orthorhombic crystalline phase with different line‐width. The chain mobility of orthorhombic crystalline phase with broad resonance line is obviously hindered compared with the phase with narrow resonance line when the filler is introduced. Additionally, the results of pulsed field gradient NMR technique show those the tortuosities in the nanocomposites are much higher than that in the bulk PE. The self‐diffusion process of probe molecules is also influenced by the palygorksite load. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1363–1371, 2010     

Quantitative Structural Constraints for Organic Powders at Natural Isotopic Abundance Using Dynamic Nuclear Polarization Solid‐State NMR Spectroscopy

A straightforward method is reported to quantitatively relate structural constraints based on ¹³C–¹³C double‐quantum build‐up curves obtained by dynamic nuclear polarization (DNP) solid‐state NMR to the crystal structure of organic powders at natural isotopic abundance. This method relies on the significant gain in NMR sensitivity provided by DNP (approximately 50‐fold, lowering the experimental time from a few years to a few days), and is sensitive to the molecular conformation and crystal packing of the studied powder sample (in this case theophylline). This method allows trial crystal structures to be rapidly and effectively discriminated, and paves the way to three‐dimensional structure elucidation of powders through combination with powder X‐ray diffraction, crystal‐structure prediction, and density functional theory computation of NMR chemical shifts.     

Direct Observation of Alkyl Chain Interdigitation in Conjugated Polyquarterthiophene Self‐Organized on Graphite Surfaces

A solution processible polymer—poly(3,3‴‐didodecylquaterthiophene) (PQT‐12) is investigated at the liquid/solid interface using the scanning tunneling microscopy (STM). Two‐dimensional ordered films made up of self‐assembled domains, with dimensions of 100 nm × 50 nm adsorbed on highly oriented pyrolytic graphite (HOPG) were formed. These domains consist of parallel lamellar polymer chains, with the alkyl chains forming interdigitated structures, along with U‐shaped and closed ring segments of the polymer chains. A polymer chain packing model is proposed herein, which attempts to propose a correlation between the packing of long chains and charge mobilities. These STM results could help in understanding the relationship between the extended conjugation and molecular organization of the PQT‐12 chains.

     

Accelerating Diffusion‐Ordered NMR Spectroscopy by Joint Sparse Sampling of Diffusion and Time Dimensions

Diffusion‐ordered multidimensional NMR spectroscopy is a valuable technique for the analysis of complex chemical mixtures. However, this method is very time‐consuming because of the costly sampling of a multidimensional signal. Various sparse sampling techniques have been proposed to accelerate such measurements, but they have always been limited to frequency dimensions of NMR spectra. It is now revealed how sparse sampling can be extended to diffusion dimensions.     

Stacking Structure of Confined 1‐Butanol in SBA‐15 Investigated by Solid‐State NMR Spectroscopy

Understanding the complex thermodynamic behavior of confined amphiphilic molecules in biological or mesoporous hosts requires detailed knowledge of the stacking structures. Here, we present detailed solid‐state NMR spectroscopic investigations on 1‐butanol molecules confined in the hydrophilic mesoporous SBA‐15 host. A range of NMR spectroscopic measurements comprising of ¹H spin–lattice (T₁), spin–spin (T₂) relaxation, ¹³C cross‐polarization (CP), and ¹H,¹H two‐dimensional nuclear Overhauser enhancement spectroscopy (¹H,¹H 2D NOESY) with the magic angle spinning (MAS) technique as well as static wide‐line ²H NMR spectra have been used to investigate the dynamics and to observe the stacking structure of confined 1‐butanol in SBA‐15. The results suggest that not only the molecular reorientation but also the exchange motions of confined molecules of 1‐butanol are extremely restricted in the confined space of the SBA‐15 pores. The dynamics of the confined molecules of 1‐butanol imply that the ¹H,¹H 2D NOESY should be an appropriate technique to observe the stacking structure of confined amphiphilc molecules. This study is the first to observe that a significant part of confined 1‐butanol molecules are orientated as tilted bilayered structures on the surface of the host SBA‐15 pores in a time‐average state by solid‐state NMR spectroscopy with the ¹H,¹H 2D NOESY technique.     

Synthesis and Crystal Structure of Er_2Si_2O_7

1INTRODUCTIONThecompoundwithcompositionIRE,O,:ZSiO,(RE~rareEarth)exhibitsex-tensivepolymorphismthatarecharacterizedbyboundariesateuropiumandholmiumalongtheseriesoftrivalentrareearths.Asfarasthestructureisconcerned,typeCisofspecialstabilitybecauseitsrangecanbeextendedbeyondthesmallestrareearthLug toScs tl'z}.Notlongago,wereportedstructureofNd,Si,O,withstructureformAt33.SynthesisandstructureofErZSiZO7withstructureformCarehereinre-ported.2EXPERIMENTAL'ThestartingmaterialsEr,O,…     

Crystal and molecular structure of rubidium peroxodicarbonate Rb2[C2O6

We report the crystal structure of rubidium peroxodicarbonate, which was synthesized by electrocrystallization at T=257 K, from laboratory X-ray powder diffraction data. The compound crystallizes in the monoclinic space group P2(1)/c with four formula units per unit cell and cell parameters of a=7.9129(1), b=10.5117(1), c=7.5559(1) A, beta=102.001(1) degrees, and V=614.75(1) A(3). The packing can be considered as a strongly distorted CsCl type of structure. The conformation of the peroxodicarbonate anion was found to be planar (C(2h) symmetry), in contrast to the staggered conformation of the peroxodicarbonate anion in the respective potassium peroxodicarbonate. The different conformation is attributed to packing effects.     

Relation between Polymer Conformational Structure and Dynamics in Linear and Ring Polyethylene Blends

Atomistic molecular dynamics simulations of ring‐linear polyethylene blends are employed to understand the relationship between chain conformational structure and the melt dynamics of these blends. As observed in previous studies, this study confirms that ring polymers in pure melts do not exhibit screened excluded volume interactions, contrary to linear polymers. Moreover, the average molecular shapes of the rings are quite distinct from both swollen and ideal ring polymers under theta conditions, and instead rather resemble branched polymers with screened binary excluded volume interactions, e.g., percolation clusters. Upon adding linear chains to a melt of pure rings, we find significant swelling of the rings and a corresponding shape change that is qualitatively similar to dissolving rings in a small molecule good solvent. This swelling, arising from altered self‐excluded volume interactions, translates into a large decrease in ring diffusivity, an effect that becomes more amplified when the polymer melt is entangled.     

杂氮硅三环类化合物结构的固体NMR实验研究

采用固体NMR实验方法研究了取代的三个杂氮硅三环羧酸化合物的结构,针对实验结果讨论了环上取代对化合物构型和配键的影响,以及硅和氮化学位移对环上取代的反映。     

Estimation of Self‐Diffusion Coefficients of Small Penetrants in Semicrystalline Polymers Using Single‐Sided NMR

A simple and fast way to measure proton self‐diffusion coefficients of small penetrant molecules in semicrystalline polymers is introduced. The approach takes advantage of the strong static gradient of a mobile single‐sided NMR sensor and it is demonstrated on PE samples with varying degrees of crystallinity fully saturated in either toluene or n‐hexane. The self‐diffusion coefficients were measured using the gradient stimulated echo sequence appended with a CPMG. It is also shown for the first time, with demonstration on PE plates several millimeter thick with different aging histories, that one‐dimensional profiles of self‐diffusion coefficients as a function of depth can be easily obtained.     

Phase Biaxility in Smectic‐A Side‐Chain Liquid Crystalline Elastomers

²H NMR investigations on the biaxial phase behavior of smectic‐A liquid crystalline side‐chain elastomers are presented. Biaxiality parameters were determined by measuring the quadrupolar splitting of two spin probes, namely benzene‐d₆ and hexamethylbenzene‐d₁₈, at various angles between the principal director and the external magnetic field: while for a uniaxial sample the angular dependence can be described by the second Legendre polynomial, an additional asymmetric term needs to be included to fit the data of the two investigated biaxial systems. Two elastomers synthesized from mesogens that differ in the molecular geometry in order to study the molecular origin of biaxiality were compared. Biaxiality is observed for both elastomers when approaching the glass transition, suggesting that the network dynamics dominate the formation of the biaxial phase.

     

An Efficient Labelling Approach to Harness Backbone and Side‐Chain Protons in 1H‐Detected Solid‐State NMR Spectroscopy

¹H‐detection can greatly improve spectral sensitivity in biological solid‐state NMR (ssNMR), thus allowing the study of larger and more complex proteins. However, the general requirement to perdeuterate proteins critically curtails the potential of ¹H‐detection by the loss of aliphatic side‐chain protons, which are important probes for protein structure and function. Introduced herein is a labelling scheme for ¹H‐detected ssNMR, and it gives high quality spectra for both side‐chain and backbone protons, and allows quantitative assignments and aids in probing interresidual contacts. Excellent ¹H resolution in membrane proteins is obtained, the topology and dynamics of an ion channel were studied. This labelling scheme will open new avenues for the study of challenging proteins by ssNMR.     

A concerted approach for the determination of molecular conformation in ordered and disordered materials

We present the successful application of a concerted approach for the investigation of the local environment in ordered and disordered phases in the solid state. In this approach we combined isotope labeling with computational methods and different solid-state NMR techniques. We chose triphenylphosphite (TPP) as an interesting example of our investigations because TPP exhibits two crystalline modifications and two different amorphous phases one of which is highly correlated. In particular we analyzed the conformational distribution in three of these phases. A sample of triply labeled 1-[13C]TPP was prepared and 1D MAS as well as wide-line 13C NMR spectra were measured. Furthermore we acquired 2D 13C wide-line exchange spectra and used this method to derive highly detailed information about the phenyl orientation in the investigated TPP phases. For linkage with a structure model a DFT analysis of the TPP molecule and its immediate environment was carried out. The ab initio calculations of the 13C chemical shift tensor in three- and six-spin systems served as a base for the calculation of 1D and 2D spectra. By comparing these simulations to the experiment an explicit picture of all phases could be drawn on a molecular level. Our results therefore reveal the high potential of the presented approach for detailed studies of the mesoscopic environment even in the challenging case of amorphous materials.     

An Experimental and Theoretical Investigation into the Diffusion of Olefins in Semi‐Crystalline Polymers: The Influence of Swelling in Polymer‐Penetrant Systems

A comprehensive dynamic diffusion model is developed to calculate the diffusion coefficients of low molecular weight penetrants (i.e., α‐olefins) in semi‐crystalline polyolefins from dynamic sorption measurements. The model also takes into account the extent of polymer swelling on the penetrant diffusion flux, resulting in a moving boundary value problem. The free volume theory is employed to calculate the dependence of the diffusion coefficient on the penetrant concentration. The solubilities and diffusivities of ethylene and propylene in semi‐crystalline high density polyethylene films were measured at different temperatures and pressures, using a Rubotherm® magnetic suspension microbalance operated in series with an optical view cell for the measurement of the degree of polymer swelling. It is shown that model predictions are in excellent agreement with the experimental dynamic measurements on the mass uptake of the sorbed species. Moreover, it is shown that the proposed model can predict correctly the diffusion coefficient of α‐olefins in semi‐crystalline polyolefins.