N‐substituted bis(tetrazol‐5‐yl)diazenes: Synthesis,spectra, X‐ray molecular and crystal structures,and quantum‐chemical DFT calculations

N‐Substituted bis(tetrazol‐5‐yl)diazenes (substituents are 1‐CH₃ ( 3a ), 1‐Ph ( 3b ), 2‐CH₃ ( 3c ), and 2‐^tBu ( 3d )) were synthesized by oxidative coupling of corresponding 5‐aminotetrazoles. All compounds were characterized with ¹H and ¹³C NMR, IR‐ and UV‐spectroscopy, and thermal analysis. Crystal and molecular structures of bis(1‐phenyltetra‐ zol‐5‐yl)diazene ( 3b ) and bis(2‐tert‐butyltetrazol‐5‐yl)diazene ( 3d ) were determined by single crystal X‐ray diffraction. Molecules of these compounds are trans‐isomers in solid. According to X‐Ray data, 3b molecule is S‐trans‐S‐trans conformer, however 3d is S‐cis‐S‐cis one. Quantum‐chemical investigation of geometry and relative stability of cis‐ and trans‐isomers and stable conformations of compounds 3a–d was carried out. © 2010 Wiley Periodicals, Inc. Heteroatom Chem 21:24–35, 2010; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20574     

Ab initio molecular orbital study of dications of 1,5‐dichalcogenacyclooctanes

The molecular and electronic structures of the dications of three homonuclear and three heteronuclear dichalcogenacyclooctanes (chalcogen = S, Se, or Te) were investigated by ab initio molecular orbital calculations. Four energy‐minimum structures were located for each dication. Three of those (chair‐chair, boat‐boat, and boat‐chair) have the cis configuration with respect to the chalcogen lone pairs, and the remaining one has the trans configuration. The cis isomers were found to be much more stable than the trans isomer. Among the three cis structures, the stability is in the order of boat‐chair > boat‐boat > chair‐chair for all dications. This order can be explained by considering the nonbonding H···H interactions. The chair‐chair structure (C_2v symmetry) of the 1,5‐dithiacyclooctane dication has a very low vibrational frequency of a₂ symmetry, and its LUMO energy is lower than those of boat‐boat and boat‐chair. These can rationalize the fact that in the crystalline state the dication adopts a distorted C₂ chair‐chair conformation. The transition states between the three conformers of the homonuclear dications were also located. The corresponding energy barriers are relatively low, which is consistent with their NMR spectra. The relative stabilities of the homonuclear and heteronuclear dications were elucidated on the basis of their energies and those of the corresponding neutral compounds. © 2000 John Wiley & Sons, Inc. Heteroatom Chem 11:31–41, 2000     

Conformational analysis of some 1R,4S‐2‐arylidene‐p‐menthan‐3‐ones by 1H NMR spectroscopy and molecular simulation

Based on ¹H NMR spectral analysis combined with molecular simulation, conformational states of the cyclohexanone ring were studied for some 1R,4S‐2‐(4‐X‐benzylidene)‐p‐menthan‐3‐ones (X = COOCH₃ or C₆H₅) in CDCl₃ and C₆D₆. The co‐existence of chair conformers with an axial orientation of both alkyl substituents and twist‐boat forms was established for the compounds studied at room temperature (22–23° C). The substituent X does not influence appreciably the ratio of these conformers, but the fraction of twist‐boat forms increases noticeably in benzene solutions as compared with CDCl₃ solutions. Rotameric states of the isopropyl fragment were also characterised for the compounds studied. Distinctions in conformational states for the 1R,4S‐2‐arylidene‐p‐menthan‐3‐ones and (?)‐menthone were revealed and are discussed. Copyright © 2002 John Wiley & Sons, Ltd.     

New isomeric N‐substituted hydrazones of 2‐, 3‐ and 4‐pyridinecarboxaldehydes and methyl‐3‐pyridylketone

Twelve compounds unknown in the literature N‐(E)‐2‐stilbenyloxymethylenecarbonyl substituted hydrazones of 2‐, 3‐ and 4‐pyridinecarboxaldehydes, as well as methyl‐3‐pyridylketone have been prepared. The stereochemical behavior of these compounds in dimethyl‐d₆ sulfoxide solution has been studied by ¹H NMR technique. The E geometrical isomers and cis/trans amide conformers have been found for N‐substituted hydrazones 1–12. EI induced mass spectral fragmentation of these compounds were also investigated. The data obtained create the basis for distinguishing isomers.     

Synthesis,Characterization, and Conformational Study of Acylhydrazones of α,β‐Unsaturated Aldehydes

New acylhydrazone derivatives 1–6 have been synthesized by condensation of tert‐butylphenoxyhydrazide and cinnamaldehyde A or β‐chloro‐α,β‐unsaturated aldehydes B–F . They were characterized by IR, (¹H, ¹³C, ¹⁹F) nuclear magnetic resonance (NMR), and high‐resolution mass spectroscopy. The NMR data show the existence of the cis/trans‐amide conformers due to N–C(O) bond rotation in addition to the E/Z isomers around the C=C bond of some of the starting aldehydes. The solvent polarity effects on the ratios of the cis/trans‐amide rotamers have also been investigated. Importantly, rotational barriers around the N–C(O) bond for all compounds 1–6 (62.9–68.8 kJ mol^–1) were calculated using the coalescence‐temperature method according to the Eyring equation. The results are discussed and compared with those previously reported for related acylhydrazones of aryl adehydes and acetone.     

1,3‐dipolar cycloaddition reactions of 2‐substituted azomethine N‐oxides with N‐benzyl maleimides leading to the synthesis of stereoisomers

The azomethine N‐oxides ( 1 ) on reacting with N‐benzylmaleimide ( 2 ) provide a mixture of stereoisomers 2,3‐diphenyl‐5‐benzyl‐4H‐2,3,3a,5,6,6a‐hexahydropyrrolo[3,4‐d]isoxazole‐4,6–dione derivatives ( 3 ) in good yields. These isomers have been assigned cis and trans configurations ( 3‐A and 3‐B ) with respect to proton C₃‐H on the azomethinic carbon on the basis of their PMR and H‐NMR COSY data. The ratio between cis and trans isomers has been found to be dependent on substituents present at ortho position of C‐phenyl aldehydic moiety. The salient feature of these 1,3‐dipolar cycloaddition reactions lies in that the benzylic protons on N‐benzyl moiety suffer gem coupling, indicating magnetic nonequivalence. J. Heterocyclic Chem.,, (2012).     

Quantum‐chemical,IR, NMR,and X‐ray diffraction studies on 2‐(4‐chlorophenyl)‐1‐methyl‐ 1H‐benzo[d]imidazole

The title molecule, 2‐(4‐chlorophenyl)‐1‐methyl‐1H‐benzo[d]imidazole (C₁₄H₁₁ClN₂), was prepared and characterized by ¹H NMR, ¹³C NMR, IR, and single‐crystal X‐ray diffraction. The molecular geometry, vibrational frequencies, and gauge including atomic orbital (GIAO) ¹H and ¹³C NMR chemical shift values of the title compound in the ground state have been calculated by using the Hartree‐Fock (HF) and density functional theory (DFT/B3LYP) method with 6‐31G(d) basis sets, and compared with the experimental data. The calculated results show that the optimized geometries can well reproduce the crystal structural parameters, and the theoretical vibrational frequencies and GIAO ¹H and ¹³C NMR chemical shifts show good agreement with experimental values. The energetic behavior of the title compound in solvent media has been examined using B3LYP method with the 6‐31G(d) basis set by applying the Onsager and the polarizable continuum model (PCM). Besides, molecular electrostatic potential (MEP), frontier molecular orbitals (FMO) analysis, and nonlinear optical (NLO) properties of the title compound were investigated by theoretical calculations. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Synthesis and properties of blue light‐emitting,silicon‐containing,regio‐ and stereoregular conjugated polymers

This article concerns the hydrosilylation polyaddition of 1,4‐bis(dimethylsilyl)benzene ( 1 ) with 4,4′‐diethynylbiphenyl, 2,7‐diethynylfluorene ( 2b ), and 2,6‐diethynylnaphthalene with RhI(PPh₃)₃ catalyst. Trans‐rich polymers with weight‐average molecular weights (M_w's) ranging from 19,000 to 25,000 were obtained by polyaddition in o‐Cl₂C₆H₄ at 150–180 °C, whereas cis‐rich polymers with M_w's from 4300 to 34,000 were obtained in toluene at 0 °C–r.t. These polymers emitted blue light in 4–81% quantum yields. The cis polymers isomerized into trans polymers upon UV irradiation, whereas the trans polymers did not. The device having a layer of polymer trans‐ 3b obtained from 1 and 2b demonstrated electroluminescence without any dopant. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 2774–2783, 2004     

Methyl 2,3‐dideoxy‐2‐S‐methylmercurio‐2‐thio‐β‐d‐manno‐oct‐2‐ulo­pyranosonate‐(2,6)

The hexo­pyran­osyl ring of the title compound, [Hg(CH₃)(C₉H₁₅O₇S)], adopts the ⁴C₁ chair conformation, and the anomeric configuration of the thio­methyl­mercury linkage is β. The compound exists as two symmetry‐independent conformers, A and B, within the unit cell, and each shows an almost linear S—Hg—C arrangement. Most of the bond distances and angles in A and B are similar, although a marked difference exists in the side‐chain conformation. Weak secondary intramolecular (between Hg and ring O) and intermolecular (between A and B conformers) interactions are documented.     

Influence of the stereochemical configuration on the radical polymerization of methacrylic monomers: cis‐ and trans‐(2‐cyclohexyl‐1,3‐dioxan‐5‐yl) methacrylate

The synthesis of two new isomeric monomers, cis‐(2‐cyclohexyl‐1,3‐dioxan‐5‐yl) methacrylate (CCDM) and trans‐(2‐cyclohexyl‐1,3‐dioxan‐5‐yl) methacrylate (TCDM), starting from the reaction of glycerol and cyclohexanecarbaldehyde, is reported. The process involved the preparation of different alcohol acetals and esterification with methacryloyl chloride of the corresponding cis and trans 5‐hydroxy compounds of 2‐cyclohexyl‐1,3‐dioxane. The radical polymerization reactions of both monomers, under the same conditions of temperature, solvent, monomer, and initiator concentrations, were studied to investigate the influence of the monomer configuration on the values of the propagation and termination rate constants (k_p and k_t ).The values of the ratio k_p /k_t ^1/2 were determined by UV spectroscopy by the measurement of the changes of absorbance with time at several wavelengths in the range 275–285 nm, where an appropriate change in absorbance was observed. Reliable values of the kinetics constants were determined by UV spectroscopy, showing a very good reproducibility of the kinetic experiments. The values of k_p /k_t ^1/2, in the temperature interval 45–65 °C, lay in the range 0.40–0.50 L^1/2/mol^1/2s^1/2 and 0.20–0.30 L^1/2/mol^1/2s^1/2 for CCDM and TCDM, respectively. Measurements of both the radical concentrations and the absolute rate constants k_p and k_t were also carried out with electron paramagnetic resonance techniques. The values of k_p at 60 °C were nearly identical for both the trans and cis monomers, but the termination rate constant of the trans monomer was about three times that of the cis monomer at the same temperature. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3883–3891, 2000     

1,N6‐Etheno‐2′‐deoxytubercidin hemihydrate

The title compound [systematic name: 7‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐7H‐imidazo[1,2‐c]pyrrolo[2,3‐d]pyrimidine hemihydrate], 2C₁₃H₁₄N₄O₃·H₂O or (I)·0.5H₂O, shows two similar conformations in the asymmetric unit. These two conformers are connected through one water molecule by hydrogen bonds. The N‐glycosylic bonds of both conformers show an almost identical anti conformation with χ = −107.7 (2)° for conformer (I‐1) and −107.0 (2)° for conformer (I‐2). The sugar moiety adopts an unusual N‐type (C3′‐endo) sugar pucker for 2′‐deoxyribonucleosides, with P = 36.8 (2)° and τ_m = 40.6 (1)° for conformer (I‐1), and P = 34.5 (2)° and τ_m = 41.4 (1)° for conformer (I‐2). Both conformers and the solvent molecule participate in the formation of a three‐dimensional pattern with a `chain'‐like arrangement of the conformers. The structure is stabilized by intermolecular O—H...O and O—H...N hydrogen bonds, together with weak C—H...O contacts.     

Nanostructured polymetallaynes of controlled length: Synthesis and characterization of oligomers and polymers from 1,1′‐bis‐(ethynyl)4,4′‐biphenyl bridging Pt(II) or Pd(II) centers

The reactivity of square planar palladium(II) and platinum(II) complexes in trans or cis configuration, namely trans or cis‐[dichlorobis(tributylphosphine)platinum(II)] and trans‐[dichlorobis(tributylphosphine)palladium(II)] with 1,1′‐bis(ethynyl) 4,4′‐biphenyl, DEBP, leading to π‐conjugated organometallic oligomeric and polymeric metallaynes, was investigated by a systematic variation of the reaction conditions. The formation of polymers and oligomers with defined chain length [? M(PBu₃)₂ (C?C? C₆H₄? C₆H₄? C?C? )]_n (n = 3–10 for the oligomers, n = 20–50 for the polymers) depends on the configuration of the precursor Pt(II) and Pd(II) complexes, the presence/absence of the catalyst CuI, and the reaction time. A series of model reactions monitored by XPS, GPC, and NMR ³¹P spectroscopy showed the route to modulate the chain growth. As expected, the nature of the transition metal (Pt or Pd) and the molecular weight of the polymers markedly influence the photophysical characteristics of the polymetallaynes, such as optical absorption and emission behavior. Polymetallaynes with nanostructured morphology could be obtained by a simple casting procedure of polymer solutions. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 3311–3329, 2007     

Synthesis and Structure of a 2, 8, 9‐Trioxa‐3, 5, 7‐trisila‐1‐titanaadamantane

The title compound has been prepared from [Ti(η⁵‐C₅Me₅)Cl₃] and cis‐cis‐(t‐BuSi(OH)—CH₂)₃ in hexane solution in the presence of Et₃N. The pale yellow complex was characterized by NMR and MS spectra, as well as by a crystal structure determination. The two crystallographic independent molecules in the triclinic unit cell (space group P1¯, No. 2, Z = 4) both have a nearly identical adamantane‐like TiO₃Si₃C₃ cage of approximate C_3v symmetry. The exocyclic C—C—C bond angles in the Cp‐ligand range from 123° to 129°. A quantum chemical calculation of the free molecule predicts this range to be 124° to 127°. The arrangement of the molecules in the crystal is characteristic for an offset face‐to‐face ππ stacking of the aromatic η⁵‐C₅Me₅ rings.     

Intramolecular cyclization of ω‐haloalkylsubstituted thiophosphorylacetonitriles: Synthesis and stereochemistry of 3‐cyano‐2‐oxo‐1,2‐thiaphosphacyclanes

Intramolecular S‐alkylation in a series of ω‐haloalkyl‐substituted thiophosphorylacetonitriles 5–7 presents an effective synthetic route to the hitherto unknown 3‐cyano‐2‐oxo‐1,2‐thiaphospholanes 14 and thiaphosphinanes 15 . The compounds were obtained as a mixture of cis‐ and trans‐isomers that were resolved to individual stereoisomers in most cases. For some of them, X‐ray diffraction analysis has been performed. It was shown that ³¹P NMR spectroscopy can be used to assign the stereochemistry of 3‐cyano‐2‐oxo‐1,2‐thiaphosphacyclanes. © 2002 John Wiley & Sons, Inc. Heteroatom Chem 13:1–21, 2002; DOI 10.1002/hc.1101     

A theoretical study on the conformation of 3‐phosphinoxido‐ and 3‐phosphono‐1,2,3,4,5,6‐hexahydrophosphinine 1‐oxides

The title compounds ( 2 and 4 ) obtained by the diastereoselective hydrogenation of the corresponding 1,2,3,6‐tetrahydrophosphinine oxides ( 1 and 3 ) were subjected to a detailed quantum chemical study. The possible chair conformers were calculated at the HF/6‐31G* level of theory, according to which, the 1‐phenyl‐3‐P(O)Y₂‐substituted products ( 2 ) exist in the trans₁ form, in which all substituents are equatorial. At the same time, the 1‐ethoxy‐3‐dialkylphosphono compounds ( 4 ) adopt the cis conformations, in which the 1‐ethoxy group is axial and the 3‐P(O)(OR)₂ moiety is equatorial. The major diastereomer ( 4–1 ) is cis₃, in which the 5‐methyl group is axial, while the minor one is cis₁ with an equatorial methyl substituent. It is noteworthy that the rotational position of the exocyclic P(O)Z₂ function affected the energy content of the chair conformer to a high extent. The possibility of the involvement of the twist conformers was also considered. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:520–524, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20148     

Structure and Photochemical Properties of r‐1, c‐2, t‐3, t‐4‐l, 3‐Bis [2‐ (5‐R‐benzoxazolyl) ] −2,4‐di (4‐R' ‐phenyl) cyclobutane

r‐1, c‐2, t‐3, t‐4‐1,3‐Bis[2‐(5‐R‐benzoxazolyl)]‐2,4‐di(4‐R'‐phenyl)cyclobutane (IIa: R=R' = H; IIb: R=Me, R'= H; IIc: R = Me, R' = OMe) was synthesized with high stereo‐selectivity by the photodimerization of trans‐l‐[2‐(5‐R‐benzoxazolyl)]‐2‐(4‐R'‐phenyl) ethene (Ia: R=R' = H; Ib: R = Me, R' = H; Ic: R = Me, R' = OMe) in sulfuric acid. The structures of IIa–IIc were identified by elemental analysis, IR, UV, ¹H NMR, ¹³C NMR and MS. The molecular and crystal structure of IIc has been determined by X‐ray diffraction method. The crystal of IIc (C₃₄H₃₀N₂O₄. 0.5C₂OH) is monoclinic, space group P2₁/n with cell dimensions of a = 1.5416(3), b =0.5625(1), c = 1.7875(4) nm, β = 91.56 (3)°, V= 1.550(1) nm³, Z = 2. The structure shows that the molecule of IIc is centrosymmetric, which indicates that the dimerization process is a head‐to‐tail fashion. The selectivity of the photodimerization of Ia–Ic has been enhanced by using acidic solvent and the reaction speed would be decreased when electron donating group was introduced in the 4‐position of the phenyl group. That the photodimerization is not affected by the presence of oxygen as well as its high stereo‐selectivity demonstrated that the reaction proceeded through an excited singlet state. It was also found that under irradiation of short wavelength UV, these dimers underwent photolysis completely to reproduce its trans‐monomers, and then the new formed species changed into their cis‐isomers through trans‐cis isomerization.     

Monitoring structural transformations in crystals. 13. On photocyclization in 2,3,4,5,6‐pentamethylbenzophenone, 1,3‐diphenylbutan‐1‐one and 2,4,6‐triisopropyl‐4′‐methoxybenzophenone

The geometrical parameters governing the potential for the photocyclization reaction occurring in crystals of 2,3,4,5,6‐pentamethylbenzophenone, C₁₈H₂₀O, (I), 1,3‐diphenylbutan‐1‐one, C₁₆H₁₆O, (II), and 2,4,6‐triisopropyl‐4′‐methoxybenzophenone, C₂₃H₃₀O₂, (IV), have been evaluated. Compound (IV) undergoes photocyclization but (I) and (II) do not, despite the fact that their geometrical parameters appear equally favourable for reaction. The structure of the partially reacted crystal of the photoactive compound, i.e. 2,4,6‐triisopropyl‐4′‐methoxybenzophenone–3,5‐diisopropyl‐7‐(4‐methoxyphenyl)‐8,8‐dimethylbicyclo[4.2.0]octa‐1,3,5‐trien‐7‐ol (9/1), 0.90C₂₃H₃₀O₂·0.10C₂₃H₃₀O₂, (III), was also determined, providing structural evidence for the reactivity of the compound. It has been found that the carbonyl group of the photoactive compound reacts with one of the two o‐isopropyl groups. The study has shown that the intramolecular geometrical parameters are not the only factors influencing the reactivity of compounds in crystals.     

Theoretical studies of cyclopropylsilylenes: The structures and stability of cyclopropylsilylene C3H5SiH

Ab initio molecular orbital calculations at the G2(MP2) level have been carried out on cyclopropylsilylene C₃H₅SiH. Four equilibrium structures were located. Like H₂Si, the ground state of C₃H₅SiH is singlet and the triplet is the low‐lying excited state. The singlet–triplet separation energy is 127.9 kJ/mol. The cis‐trans isomerization path of singlet cyclopropylsilylene was investigated by intrinsic reaction coordinate (IRC) calculations. The calculations show that no gauche conformers exist along the potential energy curve of the cis‐trans isomerization and the isomerization happens with a barrier of 30.1 kJ/mol. Changes (ΔH and ΔG) in thermodynamic functions, equilibrium constant K(T), and A factor and reaction rate constant k(T) in Eyring transition state theory of the cis‐trans isomerization were also calculated. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Preparation and structural analysis of (±)‐cis‐ethyl 2‐sulfanylidenedecahydro‐1,6‐naphthyridine‐6‐carboxylate and (±)‐trans‐ethyl 2‐oxooctahydro‐1H‐pyrrolo[3,2‐c]pyridine‐5‐carboxylate

Bicycle ring closure on a mixture of (4aS,8aR)‐ and (4aR,8aS)‐ethyl 2‐oxodecahydro‐1,6‐naphthyridine‐6‐carboxylate, followed by conversion of the separated cis and trans isomers to the corresponding thioamide derivatives, gave (4aSR,8aRS)‐ethyl 2‐sulfanylidenedecahydro‐1,6‐naphthyridine‐6‐carboxylate, C₁₁H₁₈N₂O₂S. Structural analysis of this thioamide revealed a structure with two crystallographically independent conformers per asymmetric unit (Z′ = 2). The reciprocal bicycle ring closure on (3aRS,7aRS)‐ethyl 2‐oxooctahydro‐1H‐pyrrolo[3,2‐c]pyridine‐5‐carboxylate, C₁₀H₁₆N₂O₃, was also accomplished in good overall yield. Here the five‐membered ring is disordered over two positions, so that both enantiomers are represented in the asymmetric unit. The compounds act as key intermediates towards the synthesis of potential new polycyclic medicinal chemical structures.     

Peptide models XXIII. Conformational model for polar side‐chain containing amino acid residues: A comprehensive analysis of RHF,DFT, and MP2 properties of HCO‐L‐SER‐NH2

Geometric and energetic properties of a diamide of serine, HCO‐NH‐L ‐CH(CH₂OH)CO‐NH₂, are investigated by standard methods of computational quantum chemistry. Similarly to other amino acid residues, conformational properties of HCO‐L ‐Ser‐NH₂ can be derived from the analysis of its E=E(ϕ,ψ;χ₁,χ₂) hypersurface. Reoptimization of 44 RHF/3‐21G conformers at the RHF/6‐311++G** level resulted in 36 minima. For all conformers, geometrical properties, including variation of H‐bond parameters and structural shifts in the torsional space, are thoroughly investigated. Results from further single‐point energy calculations at the RHF, DFT, and MP2 levels, performed on the entire conformational data set, form a database of 224 energy values, perhaps the largest set calculated so far for any single amino acid diamide. A comprehensive analysis of this database reveals significant correlation among energies obtained at six levels of ab initio theory. Regression parameters provide an opportunity for extrapolation in order to predict the energy of a conformer at a high level by doing explicit ab initio computations only for a few selected conformers. The computed conformational and relative energy data are compared with structural and occurrence results derived from a nonhomologous protein database incorporating 1135 proteins. © 2000 John Wiley & Sons, Inc. J Comput Chem 21: 626–655, 2000