Spectroscopic and thermal studies on the inclusion of trans‐cinnamic acid and a number of its hydroxyl‐derivatives with α, β and γ‐cyclodextrins molecules

The inclusion compounds of α‐, β‐ and γ‐cyclodextrins (α‐CD, β‐CD and γ‐CD) with trans‐cinnamic acid (t‐CIA), 3‐hydroxy‐trans‐cinnamic acid (t‐3OHCIA), 4‐hydroxy‐trans‐cinnamic acid (t‐4OHCIA) and 3,4‐dihydroxy‐trans‐cinnamic acid (t‐3,4OHCIA) were prepared and characterized, in the solid state, by means of thermogravimetry and Raman spectroscopy. The effects of the inclusion process on the guest molecules and on the hydrogen bond interactions of the guest were studied by monitoring sensitive vibrational modes, such as CO, CC and ring C H stretching modes. By combining Raman and TG data with ab initio calculations and information from CSD database on similar compounds, inclusion geometries for the different compounds are proposed. The size of the host cavity and the maximization of host/guest hydrogen‐bonding contacts appear to be the main factors determining the inclusion geometries. Copyright © 2009 John Wiley & Sons, Ltd.     

IR,Raman and SERS spectra of 3,5‐dinitrosalicylic acid

IR, Raman and surface enhanced Raman scattering (SERS) spectra of 3,5‐dinitrosalicylic acid (DNSA) were recorded and analysed. The vibrational wavenumbers were computed by the ab initio method using RHF/6–21G* basis and they were found to be in good agreement with the experimental values. The effect of the concentration dependence on the SERS intensity of the molecule was studied. The molecular plane assumes a tilted orientation with respect to the silver surface. Copyright © 2006 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and crystal structure analysis of two polymorphs of the di‐amino acid peptide cyclo(L‐Glu‐L‐Glu)

Cyclo(L ‐Glu‐L ‐Glu) has been crystallised in two different polymorphic forms. Both polymorphs are monoclinic, but form 1 is in space group P2₁ and form 2 is in space group C2. Raman scattering and FT‐IR spectroscopic studies have been conducted for the N,O‐protonated and deuterated derivatives. Raman spectra of orientated single crystals, solid‐state and aqueous solution samples have also been recorded. The different hydrogen‐bonding patterns for the two polymorphs have the greatest effect on vibrational modes with N H and CO stretching character. DFT (B3‐LYP/cc‐pVDZ) calculations of the isolated cyclo(L ‐Glu‐L ‐Glu) molecule predict that the minimum energy structure, assuming C₂ symmetry, has a boat conformation for the diketopiperazine ring with the two L ‐Glu side chains being folded above the ring. The calculated geometry is in good agreement with the X‐ray crystallographic structures for both polymorphs. Normal coordinate analysis has facilitated the band assignments for the experimental vibrational spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectroscopic studies of the structure of di‐amino acid peptides. Part II: cyclo(L‐Asp‐L‐Asp) in the solid state and in aqueous solution

Solid‐state protonated and N,O‐deuterated Fourier transform infrared (IR) and Raman scattering spectra together with the protonated and deuterated Raman spectra in aqueous solution of the cyclic di‐amino acid peptide cyclo(L ‐Asp‐L ‐Asp) are reported. Vibrational band assignments have been made on the basis of comparisons with previously cited literature values for diketopiperazine (DKP) derivatives and normal coordinate analyses for both the protonated and deuterated species based upon DFT calculations at the B3‐LYP/cc‐pVDZ level of the isolated molecule in the gas phase. The calculated minimum energy structure for cyclo(L ‐Asp‐L ‐Asp), assuming C₂ symmetry, predicts a boat conformation for the DKP ring with both the two L ‐aspartyl side chains being folded slightly above the ring. The CO stretching vibrations have been assigned for the side‐chain carboxylic acid group (e.g. at 1693 and 1670 cm⁻¹ in the Raman spectrum) and the cis amide I bands (e.g. at 1660 cm⁻¹ in the Raman spectrum). The presence of two bands for the carboxylic acid CO stretching modes in the solid‐state Raman spectrum can be accounted for by factor group splitting of the two nonequivalent molecules in a crystallographic unit cell. The cis amide II band is observed at 1489 cm⁻¹ in the solid‐state Raman spectrum, which is in agreement with results for cyclic di‐amino acid peptide molecules examined previously in the solid state, where the DKP ring adopts a boat conformation. Additionally, it also appears that as the molecular mass of the substituent on the C^α atom is increased, the amide II band wavenumber decreases to below 1500 cm⁻¹; this may be a consequence of increased strain on the DKP ring. The cis amide II Raman band is characterized by its relatively small deuterium shift (29 cm⁻¹), which indicates that this band has a smaller N H bending contribution than the trans amide II vibrational band observed for linear peptides. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectra and crystal structure of the di‐amino acid peptide cyclo(L‐Met‐L‐Met): comparison of experimental data and DFT calculations

Experimental Raman and FT‐IR spectra of solid‐state non‐deuterated and N‐deuterated samples of cyclo(L ‐Met‐L ‐Met) are reported and discussed. The Raman and FT‐IR results show characteristic amide I vibrations (Raman: 1649 cm⁻¹, infrared: 1675 cm⁻¹) for molecules exhibiting a cis amide conformation. A Raman band, assigned to the cis amide II vibrational mode, is observed at ∼1493 cm⁻¹ but no IR band is observed in this region. Cyclo(L ‐Met‐L ‐Met) crystallises in the triclinic space group P1 with one molecule per unit cell. The overall shape of the diketopiperazine (DKP) ring displays a (slightly distorted) boat conformation. The crystal packing employs two strong hydrogen bonds, which traverse the entire crystal via translational repeats. B3‐LYP/cc‐pVDZ calculations of the structure of the molecule predict a boat conformation for the DKP ring, in agreement with the experimentally determined X‐ray structure. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and DFT calculations of di‐amino acid cyclic peptides. Part I: cyclo(Gly‐Gly), cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly) in the solid state and in aqueous solution

Investigations of the vibrational spectra of cyclo(Gly‐Gly), cyclo(L‐Ala‐L ‐Ala) and cyclo(L ‐Ala‐Gly) are reported. Raman scattering and Fourier transform infrared (FTIR) spectra of solid‐state and aqueous protonated samples, as well as their corresponding N‐deuterated isotopomers, have been examined. In addition, density functional theory (DFT) (B3‐LYP/cc‐pVDZ) calculations of molecular structures and their associated vibrational modes were carried out. In each case, the calculated structures of lowest energy for the isolated gas‐phase molecules have boat conformations. Assignments have been made for the observed Raman and FTIR vibrational bands of the cyclic di‐amino acid peptides (CDAPs) examined. Raman polarization studies of aqueous phase samples are consistent with C₂ and C₁ symmetries for the six‐membered rings of cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly), respectively. There is a good correlation between experimental and calculated vibrational bands for the three CDAPs. These data are in keeping with boat conformations for cyclo(L‐Ala‐L‐Ala) and cyclo(L‐Ala‐Gly) molecules, predicted by the ab initio calculations, in both the solid and aqueous solution states. However, Raman spectroscopic results might infer that cyclo(L‐Ala‐Gly) deviates only slightly from planarity in the solid state. The potential energy distributions of the amide I and II modes of a cis‐peptide linkage are shown to be significantly different from those of the trans‐peptides. For example, deuterium shifts have shown that the cis‐amide I vibrations found in cyclo(Gly‐Gly), cyclo(L‐Ala‐L‐Ala), and cyclo(L‐Ala‐Gly) have larger N‐H contributions compared to their trans‐amide counterparts. Compared to trans‐amide II vibrations, cis‐amide II vibrations show a considerable decrease in N H character. Copyright © 2009 John Wiley & Sons, Ltd.     

Experimental and theoretical studies of the vibrational spectra of CHD2Br

The dideuterated form of methyl bromide, CHD₂Br, has been synthesized and the gas-phase infrared spectra investigated in the range 400–10,000?cm^–1 using a medium-resolution FTIR spectrometer. The nine fundamental bands have been characterized in detail. Six of them, i.e. ν ₁, ν ₄, ν ₅, ν ₇, ν ₈ and ν ₉, have been rotationally analysed through the assignment of the partially resolved structure of the ^PQ_K and ^RQ_K cluster of lines and the spectroscopic parameters have been derived in the symmetric top limit approximation. Among the fundamental levels, anharmonic resonance occurs between ν ₇/ν ₄?+?ν ₈ and ν ₈/ν ₆?+?ν ₉. An isotopic ^79/81Br shift was found for ν ₆ and in the more complex region of the ν ₈ fundamental. High-quality ab initio calculations – carried out at coupled cluster level [CCSD(T)] employing the correlation-consistent basis set of Dunning (cc-pVTZ) – were performed to determine quadratic, cubic and quartic (semidiagonal) force constants. Using these constants and applying second-order vibrational perturbation theory (VPT2), with allowance for resonances (when necessary), permitted us to identify and assign, in addition to the fundamentals, about 70 overtones and combination bands up to three quanta.     

Density functional theory calculations and vibrational spectra of p‐bromonitrobenzene

FT‐IR and FT‐Raman spectra of p‐bromonitrobenzene (p‐BNB) have been recorded in the region 4000–400 cm⁻¹ and 4000–50 cm⁻¹, respectively. The molecular structure, geometry optimization, vibrational wavenumbers have been investigated. The spectra were interpreted with the aid of normal coordinate analysis based on the density functional theory (DFT) using the standard B3LYP/6‐31G method and basis set combination and was scaled using multiple scale factors yielding good agreement between observed and calculated wavenumbers. The results of the calculations are applied to simulate infrared and Raman spectra of the title compound which showed reasonable agreement with the observed spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

IR/Raman spectroscopy and DFT calculations of cyclic di‐amino acid peptides. Part III: comparison of solid state and solution structures of cyclo(L‐Ser‐L‐Ser)

B3‐LYP/cc‐pVDZ calculations of the gas‐phase structure and vibrational spectra of the isolated molecule cyclo(L ‐Ser‐L ‐Ser), a cyclic di‐amino acid peptide (CDAP), were carried out by assuming C₂ symmetry. It is predicted that the minimum‐energy structure is a boat conformation for the diketopiperazine (DKP) ring with both L ‐seryl side chains being folded slightly above the ring. An additional structure of higher energy (15.16 kJ mol⁻¹) has been calculated for a DKP ring with a planar geometry, although in this case two fundamental vibrations have been calculated with imaginary wavenumbers. The reported X‐ray crystallographic structure of cyclo(L ‐Ser‐L ‐Ser), shows that the DKP ring displays a near‐planar conformation, with both the two L ‐seryl side chains being folded above the ring. It is hypothesized that the crystal packing forces constrain the DKP ring in a planar conformation and it is probable that the lower energy boat conformation may prevail in the aqueous environment. Raman scattering and Fourier‐transform infrared (FT‐IR) spectra of solid state and aqueous solution samples of cyclo(L ‐Ser‐L ‐Ser) are reported and discussed. Vibrational band assignments have been made on the basis of comparisons with the calculated vibrational spectra and band wavenumber shifts upon deuteration of labile protons. The experimental Raman and IR results for solid‐state samples show characteristic amide I vibrations which are split (Raman: 1661 and 1687 cm⁻¹, IR: 1666 and 1680 cm⁻¹), possibly due to interactions between molecules in a crystallographic unit cell. The cis amide I band is differentiated by its deuterium shift of ∼30 cm⁻¹, which is larger than that previously reported for trans amide I deuterium shifts. A cis amide II mode has been assigned to a Raman band located at 1520 cm⁻¹. The occurrence of this cis amide II mode at a wavenumber above 1500 cm⁻¹ concurs with results of previously examined CDAP molecules with low molecular weight substituents on the C^α atoms, and is also indicative of a relatively unstrained DKP ring. Copyright © 2009 John Wiley & Sons, Ltd.     

Spectroscopic and ab initio characterization of the conformational states of the bis(perfluoro‐ ethanesulfonyl)imide anion (BETI−)

Ab initio calculations were combined with infrared and Raman studies to spectroscopically distinguish the two conformers of the BETI⁻ or bis(perfluoroethanesulfonyl)imide anion, [N(SO₂C₂F₅)₂]⁻, as was previously done for [N(SO₂CF₃)₂]⁻, the TFSI⁻ anion. BETI⁻ is predicted to exist, as does TFSI⁻, in two conformational states of C₂ and C₁ symmetries, the former being more stable by about 6 kJ mol⁻¹. This conformational isomerism produces weak Raman splittings that can be resolved only at low temperatures. Thus, solutions of LiBETI with glymes cooled down to 113 K exhibit a very intense Raman doublet at ∼745–740 cm⁻¹ characteristic of a quenched conformational equilibrium between the C₂ and C₁ conformers. Annealing of the (G3)₂:LiBETI solvate, where G3 is triglyme, leads to an ordered crystalline phase with all the anions in the C₂ conformation, as in the reference salt Me₄NBETI. This conclusion cannot be extended to all the systems in which the BETI⁻ anion interacts weakly with the cation, however, since the diglyme solvate, (G2)₂:LiBETI, contains both C₁ and C₂ anion conformers (in 2:1 ratio) at low temperatures independent of the sample's thermal history. The conformational splittings are larger in infrared, as illustrated by two absorption bands at 601 and 615 cm⁻¹ associated with the C₂ and C₁ anion conformers, respectively. It is possible to follow the relative intensities of these bands in a LiBETI solution with diglyme above room temperature up to 387 K. The C₂ conformer is found to be more stable than C₁ by 4.7 ± 0.7 kJ mol⁻¹. Copyright © 2006 John Wiley & Sons, Ltd.     

Ionic liquid structure: the conformational isomerism in 1‐butyl‐3‐methyl‐imidazolium tetrafluoroborate ([bmim][BF4])

As a probe of local structure, the vibrational properties of the 1‐butyl‐3‐methylimidazolium tetrafluoroborate [bmim][BF₄] ionic liquid were studied by infrared (IR), Raman spectroscopy, and ab initio calculations. The coexistence of at least four [bmim]⁺ conformers (GG, GA, TA, and AA) at room temperature was established through unique spectral responses. The Raman modes characteristic of the two most stable [bmim]⁺ conformers, GA and AA, according to the ab initio calculations, increase in intensity with decreasing temperature. To assess the total spectral behavior of the ionic liquid both the contributions of different [bmim]⁺ conformers and the [bmim]⁺− [BF₄]⁻ interactions to the vibrational spectra are discussed. Copyright © 2008 John Wiley & Sons, Ltd.     

Identification of hydrogen bond modes in polarized Raman spectra of single crystals of α‐oxalic acid dihydrate

Polarized Raman spectra of single crystals of the α‐polymorphs of protonated and deuterated oxalic acid dihydrate were recorded. The interpretation of the spectra is assisted by periodic DFT calculations using the CRYSTAL06 program and by comparison with the infrared spectra of the polycrystalline material. The agreement between the calculated and observed band wavenumbers is fair in the case of low‐anharmonicity modes, but marked differences appear for the stretching modes that are strongly anharmonic. A very broad feature, extending between ∼2000 and 1200 cm⁻¹, is attributed to OH stretching. Notable is the topping of this feature by distinct bands that can be attributed to CO stretching, H₂O scissoring and COH bending coupled to C O stretching. The assignments are supported by isotope effects. However, deuteration does not notably affect the wavenumber limits of the broad OH stretching band, which suggests that the potential governing the proton dynamics is of the asymmetric double‐minimum type with a very low barrier. The calculated normal coordinates show a strong participation of the bending modes of water molecules in almost all internal acid motions, as well as in the external phonons. Copyright © 2009 John Wiley & Sons, Ltd.     

Molecular structure,NMR and vibrational spectral analysis of 2,4‐difluorophenol by ab initio HF and density functional theory

Quantum chemical calculations of energies, geometries and vibrational wavenumbers of 2,4‐difluorophenol (2,4‐DFP) were carried out by using ab initio HF and density functional theory (DFT/B3LYP) methods with 6‐311G(d,p) as basis set. The optimized geometrical parameters obtained by HF and DFT calculations are in good agreement with related molecules. The best level of theory in order to reproduce the experimental wavenumbers is the B3LYP method with the 6‐311G(d,p) basis set. The difference between the observed and scaled wavenumber values of most of the fundamentals is very small. A detailed interpretation of the infrared and Raman spectra of 2,4‐DFP is also reported. The entropy of the title compound was also performed at HF/6‐311G(d,p) and B3LYP/6‐311G(d,p) levels of theory. The isotropic chemical shift computed by ¹H, ¹³C NMR analyses also shows good agreement with experimental observations. The theoretical spectrograms for FT‐IR and FT‐Raman spectra of the title molecule have been constructed. Copyright © 2009 John Wiley & Sons, Ltd.     

Conformational stability from Raman spectra,r0 structural parameters,and vibrational assignment of methylcyclohexane

The Raman spectra (3500–50 cm⁻¹) of the liquid and solid methylcyclohexane and the infrared spectra of the gas and solid methylcyclohexane have been recorded. The Raman band at 754 cm⁻¹ in the liquid has been confidently assigned to the less stable axial conformer and its intensity was recorded as a function of temperature from 25 to −95 °C. By the utilization of 15 different temperatures, the enthalpy difference between the more stable chair‐equatorial conformer and the chair‐axial form was determined to be 712 ± 71 cm⁻¹ (8.50 ± 0.84 kJ/mol). The ab initio predicted value of 710 cm⁻¹ (8.50 kJ/mol) from the MP2(full)/6‐311G(2d,2p) calculations with and without diffuse functions is in excellent agreement. The harmonic force fields, infrared intensities, Raman activities, depolarization ratios, and vibrational wavenumbers have been obtained for both conformers from MP2(full)/6‐31G(d) ab initio calculations. With two scaling factors of 0.88 for the C‐H stretches and 0.9 for the remaining ones, the fundamental wavenumbers have been predicted and along with the depolarization values and infrared band contours (B‐type for A″ modes) a complete vibrational assignment has been made for the chair‐equatorial conformer. Predicted r₀ structural parameters have been provided from adjusted parameters from ab initio MP2(full)/6‐311+G(d,p) calculations. The results are discussed and compared with the corresponding properties of some similar molecules. Copyright © 2009 John Wiley & Sons, Ltd.     

Density functional and experimental studies on the FT‐IR and FT‐Raman spectra and structure of benzoic acid and 3,5‐dichloro salicylic acid

FT‐IR and FT‐Raman spectra of benzoic acid (BA) and 3,5‐dichloro salicylic acid (SA) have been recorded in the regions of 4000–400 and 4000–50 cm⁻¹ respectively. The spectra were interpreted with the aid of normal coordinate analysis following the full structure optimizations and force field calculations based on density functional theory (DFT) using standard B3LYP6‐31G** method and basis set combinations. The DFT force field transformed to natural internal coordinates was corrected by a well‐established set of scale factors that were found to be transferable to the title compounds. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of the simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes. Copyright © 2008 John Wiley & Sons, Ltd.     

DFT simulations and vibrational analysis of FTIR and FT‐Raman spectra of 2‐amino‐4,6‐dihydroxypyrimidine

This work deals with the vibrational spectroscopy of 2‐amino‐4,6‐dihydroxy pyrimidine (ADHP) by means of quantum chemical calculations. The mid‐ and far FTIR and FT‐Raman spectra were measured in the condensed state. The fundamental vibrational wavenumbers and intensity of vibrational bands were evaluated using density functional theory (DFT) with the standard B3LYP/6‐311 + G** methods and basis set combinations, and were scaled using various scale factors, which yielded good agreement between the observed and calculated wavenumbers. The vibrational spectra were interpreted with the aid of normal coordinate analysis based on the scaled density functional force field. The results of the calculations were applied to simulate the infrared and Raman spectra of the title compound, which showed excellent agreement with the observed spectra. Copyright © 2008 John Wiley & Sons, Ltd.     

Density functional theory calculations and vibrational spectra of 2‐bromo‐4‐chloro phenol and 2‐chloro‐4‐nitro phenol

FTIR and FT Raman spectra of 2‐bromo‐4‐chloro phenol (BCP) and 2‐chloro‐4‐nitro phenol (CNP) were recorded in the region 4000–400 and 4000–50 cm⁻¹, respectively. The molecular structure, geometry optimization, and vibrational wavenumbers were investigated. The spectra were interpreted with the aid of normal coordinate analysis based on density functional theory (DFT) using the standard B3LYP/6‐31G** method and basis set combination and was scaled using multiple scale factors, which yield good agreement between the observed and calculated wavenumbers. The results of the calculations are applied to simulate the infrared and Raman spectra of the title compounds, which showed excellent agreement with the observed spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

FT‐IR,FT‐Raman and SERS spectra of anilinium sulfate

The FT‐IR and FT‐Raman spectra of anilinium sulfate were recorded and analyzed. The surface‐enhanced Raman scattering (SERS) was recorded from a silver electrode. The vibrational wavenumbers of the compound have been computed using the Hartree‐Fock/6‐31G* basis and compared with the experimental values. The molecule is adsorbed on the silver surface with the benzene ring in a tilted orientation. The presence of amino and sulfate group vibrations in the SERS spectrum reveal the interaction between amino and sulfate groups with the silver surface. The direction of the charge transfer contribution to SERS has been discussed from the frontier orbital theory. Copyright © 2009 John Wiley & Sons, Ltd.     

Se_7环两种构型的结构和红外振动光谱的理论研究

在从头算层次上采用自洽场Hartree -Fock(SCF -HF)与密度泛函理论 (DFT)的定域自旋密度泛函SVWN和杂化泛函B3LYP方法以及 6 - 31 G(d)基组 ,计算优化了Se7环chair和boat两种分子构型。以B3LYP/ 6 - 31 G(d)优化的结构为基础 ,计算了Se7环两种构型的红外振动光谱 ,标定了这两种构型的各个简谐振动模式的对称性。计算结果与前人的理论、实验数据进行了比较。     

DFT‐aided interpretation of the Raman spectra of the polymorphic forms of Y2Si2O7

Y₂Si₂O₇ is an intriguing material combining a complex structural polymorphism with several important technological applications. Raman spectra were experimentally determined for most of the seven known modifications of Y₂Si₂O₇ except the form ε, and in the case of β, γ, δ and ζ for the first time. The error‐prone procedure of mode assignment to the measured Raman bands, usually done by comparison with similar or related structures, has been replaced by quantum chemical calculations of the spectra of the polymorphs. Various functionals were evaluated considering the agreement of the calculated modes with the experimental data. The average and maximum deviations between calculated and experimental spectra are ± 8 cm⁻¹ and 20 cm⁻¹, respectively. Assignments of most of the observed bands to vibrational modes are given. The relationship between selected Raman bands, Si O and Y O polyhedra stretching and bending modes, and the crystal structures are discussed. Y₂Si₂O₇ offers the possibility to study the relationship between structural and spectral changes in a chemically fixed system. Copyright © 2010 John Wiley & Sons, Ltd.