Interaction of coadsorbed CH3Cl and D2O layers on Pd(111) studied by sum frequency generation

Adsorption of methyl chloride and coadsorption of CH3Cl and D2O on Pd(111) surfaces at T=100 K have been studied under ultrahigh-vacuum conditions using femtosecond sum frequency generation (SFG) spectroscopy in the spectral regions of CH and OD bands. On the bare Pd(111) substrate, the CH3Cl coverage dependence of the resonant SFG signal is consistent with a progressive molecular rearrangement starting at half saturation followed by the growth of two ordered monolayers in which the molecular axes are perpendicular to the surface. When CH3Cl is adsorbed on top of predeposited D2O on Pd(111), the SFG signals as a function of the CH3Cl exposure indicate that methyl chloride is adsorbed onto D2O through hydrogen bonding. On the contrary when the adsorption order is reversed the strong decrease of the CH3 signal as a function of the D2O exposure is explained by assuming that water molecules penetrate inside the CH3Cl layers, leading to the formation of disordered CH3Cl clusters. In all cases a nonresonant contribution due to molecular adsorption is observed and it shows a dependence upon surface structure and coverage significantly different from that of the resonant vibrational bands.     

The adsorption of quinizarin on boron-doped diamond

The voltammetric response of the quinone species 'quinizarin' (QZ) and its electrocatalytic reduction of oxygen are studied at a boron doped diamond electrode (BDD). It is demonstrated that, contrary to the widespread belief that adsorption of organic molecules on BDD is minimal, not only does QZ readily adsorb to the electrodes surface but this adsorption is also influenced at low surface coverages by the pre-exposure of the electrode to organic solvents. Furthermore, the nature of this adsorbed QZ species is investigated and a potential dependent phase transition is observed. This is to the authors knowledge the first system to exhibit a phase transition of an adsorbed species on a boron doped diamond surface. At low scan rates the system is found to oscillate; these oscillations are ascribed to the presence of a 'negative differential resistance'.     

Competing dissociation of and bond formation between CH3CHOH+ and .CH2CH3 formed by bimolecular processes

The C₄H₁₀O^.+ potential energy surface was accessed at several energies through different ion/molecule reactions. Reaction of CH₃CH^.+₃ with CH₃CHO and CH₃CHO^.+ with CH₃CH₃ gave predominantly CH₃CHOH⁺ +^. CH₂CH₃ and small amounts of CH₃CH₂CHOH⁺ +^. CH₃. CH₃CH^.+₃ also produced a small amount of CH₃CHO⁺CH₃ +^. CH₃ upon reaction with CH₃CHO. CH₂ = CHOH^. + did not react with CH₃CH₃. CH₃CH₂OH^. + reacted CH₂ = CH₂ and CH₂ = CH^.+₂ with CH₃CH₂OH to produce CH₃CH₂OH⁺₂ and CH₃CHOH⁺, but only the second pair of reactants produced detectable C₃H₇O⁺ ions. CH₃CH₂CHO.+⁺CH₄ produced only CH₃CH₂CHOH⁺. In all of the reactions examined, initial proton or H-transfer was much more often followed by simple dissociation than by CC bond formation or multiple H-transfers. This contrasts with the metastable decompositions of ionized 2-butanol, in which elimination of ethane and methane through the complexes [CH₃CHOH^+.CH₂CH₃] and [CH₃CH₂CHOH^+.CH₃] are important processes. This contrast is attributed to the ion/molecule reactions taking place in a higher energy regime than the metastable decompositions.     

Effect of hydrogen on diamond growth from a gaseous phase

Conclusions There is a range of temperatures and pressures in which dilution with hydrogen, a reaction product, will increase the rate of growth on diamond seed crystals from methane and ethane.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 6, pp. 1252–1256, June, 1978.     

Mixed monolayers to promote g-protein adsorption: alpha2A-adrenergic receptor-derived peptides coadsorbed with formyl-terminated oligopeptides

Pure and mixed monolayers of a synthetic peptide, GPR-i3n, derived from the third intracellular loop of the alpha2 adrenergic receptor and a shorter inactive oligopeptide, N-formyl-(Gly)3-(Cys) (called 3GC), were prepared on gold surfaces. The mixing ratio of the GPR-i3n and 3GC was used to control G-protein binding capability. The GPR-i3n peptide is specially designed for bovine G-protein selectivity and has been proven to have high affinity to G-proteins [Vahlberg, C.; Petoral, R. M., Jr.; Lindell, C.; Broo, K.; Uvdal, K. Langmuir 2006, 22 (17), 7260-7264]. Pure 3GC monolayers show very low protein adsorption capability. In this study, 3GC is chosen as a coadsorbent, with the aim to induce molecular conformational changes during monolayer formation to enhance G-protein adsorption. A full characterization of the mixed monolayers was done. The monolayer thickness and the mass-related surface coverage for both GPR-i3n and 3GC were investigated using radio labeling. The GPR-i3n was labeled by 125I-targeting tyrosine, and the activity was measured by using radioimmunoassay (RIA). The formation and chemical composition of GPR-i3n and 3GC monolayers were investigated using X-ray photoelectron spectroscopy, and it is shown that both GPR-i3n and 3GC bind chemically to the gold surface. The interaction between the mixed monolayers and G-proteins was investigated by means of real-time surface plasmon resonance. There is a higher protein binding capacity to the monolayer when the GPR-i3n peptide is intermixed with the 3GC coadsorbent, despite the fact that the 3GC itself has a very low G-protein binding capability. This supports a molecular reorientation at the surface, while 3GC is intermixed with GPR-i3n.     

Ionization processes accompaning interaction of excited atoms with CH3CN,CH3COOH,and HCOOH molecules

The fragmentation processes of the molecular ions formed as a result of single collisions of metastable and highly excited Rydberg atoms of noble gases with molecules of acetonitrile, formic acid, and acetic acid have been investigated by a mass-spectrometric method. The correlation between the observed Penning-dissociativeionization mass spectra and the degree of overlap of the moelcular orbitals with vacant orbitals of the metastable atoms determined from the available energy spectra of the electrons formed during Penning ionization has been examined. Complex ions appearing during associative ionization have been discovered. The mechanisms for the formation of the observed ions have been discussed.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 26, No. 1, pp. 39–46, January–February, 1990.     

Ethene elimination from CH3CH2NH=CH 2 + : Reaction pathways at the boundary between stepwise and concerted processes

The elimination of ethene from CH₃CH₂NH=CH ₂ ⁺ is characterized by ab initio procedures. This reaction occurs through several asynchronous stages, but without passing through formal intermediates. A potential energy barrier to hydrogen migration from the β carbon to N is largely determined by the energy required to cleave the CN bond, but is lowered slightly by H transfer from the β to the α carbon and then to N. The complex [C₂H ₅ ⁺ NH=CH₂] is bypassed, even though that complex could exist at energies only slightly above that of the transition state for ethene elimination. Furthermore, conversion of a substantial reverse activation energy into energy of motion causes CH₂=NH ₂ ⁺ and CH₂=CH₂ to dissociate faster than they can form [CH₂=NH ₂ ⁺ CH₂=CH₂]. Comparison of results for CH₃CH₂NH=CH ₂ ⁺ to ab initio ones for methane from CH₃CH₂CH ₃ ⁺ and elimination of ethene from CH₃CH₂O=CH ₂ ⁺ and CH₃CH₂CH=OH⁺ reveals that these dissociations occur in a similar but, in each case, a distinct series of asynchronous steps or stages, and that there is no sharp demarcation between concerted and stepwise eliminations as presently defined. In dissociations of CH₃CH₂NH=CH ₂ ⁺ , loss of electron density at the C in the breaking N bond leads the transfer of electron density to that carbon by migration of a hydrogen from the adjacent C. We attribute this to a requirement for the moving H to be close to Cα before the moving H can start to develop covalent bonding to Cα. It is also concluded that elimination of ethene from CH₃CH₂NH=CH ₂ ⁺ avoids a Woodward-Hoffmann symmetry-imposed barrier by H migrating sufficiently from the β to the α carbon on the way to N, so that the dissociation is essentially a 1,1 rather than a 1,2 elimination.     

FTIR study of adsorption and surface reactions of N(CH3)3 on TiO2

Fourier transform infrared spectroscopy has been employed to investigate the N(CH3)3 adsorption, thermal stability, and photochemical reactions on powdered TiO2. N(CH3)3 molecules are adsorbed on TiO2 without dissociation at 35 degrees C and are completely desorbed from the surface at 300 degrees C in a vacuum. The CH3 rocking frequencies of N(CH3)3 on TiO2 are affected via the interaction between N(CH3)3 and TiO2 surface OH groups. In the presence of O2, adsorbed N(CH3)3 decomposes thermally at 230 degrees C and photochemically under UV irradiation. In the latter case with comparative (16)O2 and (18)O2 studies, CO2(g), NCO(a), HCOO(a), and surface species containing C=N or NH(x) functional groups are identified to be the photoreaction products or intermediates. In the presence of (18)O2, the main formate species formed is HC(16)O(18)O(a). As H2O is added to the photoreaction system, a larger percentage of adsorbed N(CH3)3 is consumed. However, in the presence of (18)O2 and H2O, the amount of HC(16)O(18)O(a) becomes relatively small, compared to HC(16)O(16)O(a). A mechanism is invoked to explain these results. Furthermore, based on the comparison of isotopic oxygens in the formate products obtained from CH3O(a) photooxidation in (16)O2 and (18)O2, it is concluded that the N(CH3)3 photooxidation does not generate CH3O(a) in which the oxygen belongs to TiO2.     

Effect of alcohols on the initial growth of multibubble sonoluminescence

The effect of alcohols on the initial growth of the multibubble sonoluminescence (MBSL) intensity in aqueous solutions has been investigated. With increasing concentrations of the alcohols, the number of pulses required to grow the MBSL intensity to a steady state (N(crit)) increases (relative to that of water) initially to a maximum for all the alcohols used in this study, followed by a decrease for methanol and ethanol. The cause of the initial increase in N(crit) is attributed to the inhibition of bubble coalescence in the system. This inhibition in bubble coalescence results in a population of bubbles with a smaller size range and thus a larger number of pulses is required to grow the bubbles to their sonoluminescing size range. It is suggested that the decrease in the N(crit) at higher alcohol concentrations may be caused by an increase in the bubble growth by rectified diffusion.     

Influence of coadsorbed hydrogen on ethylene adsorption and reaction on a (radical3 x radical3)R30 degrees-Sn/Pt(111) surface alloy

The effect of surface-bound hydrogen adatoms on adsorption, desorption, and reaction of ethylene (CH(2)=CH(2)) on a (radical3 x radical3)R30 degrees-Sn/Pt(111) surface alloy with theta(Sn) = 0.33 was investigated by using temperature-programmed desorption (TPD) and Auger electron spectroscopy (AES). Preadsorbed H decreased the saturation coverage of chemisorbed ethylene and less H was required to completely block ethylene chemisorption on this alloy than that on Pt(111). This is also the first report of extensive H site-blocking of ethylene chemisorption on Pt(111). Preadsorbed H also decreased the desorption activation energy of ethylene on the alloy surface. The reaction chemistry of ethylene on this Sn/Pt(111) alloy is dramatically different than on the Pt(111) surface: the H-addition reaction channel taking ethylene to ethane on Pt(111) is totally inhibited on the alloy. This is important information for advancing understanding of the surface chemistry involved in hydrogenation and dehydrogenation catalysis.     

Potential energy of adsorption of the sphere-like molecules CH4, C(CH3)4 and CCl4 on graphite

Summary Theoretical calculations of the potential energy of the dispersion interaction of sphere-like molecules of methane, neopentane, and carbon tetrachloride with the basal plane of the graphite lattice have shown that it is a good idea to divide the neopentane molecule into links, while it is better to divide the carbon tetrachloride molecule, which contains large chlorine atoms, into individual atoms.     

Secondary kinetics of methanol decomposition: theoretical rate coefficients for 3CH2 + OH, 3CH2 + 3CH2, and 3CH2 + CH3

Direct variable reaction coordinate transition state theory (VRC-TST) rate coefficients are reported for the (3)CH(2) + OH, (3)CH(2) + (3)CH(2), and (3)CH(2) + CH(3) barrierless association reactions. The predicted rate coefficient for the (3)CH(2) + OH reaction (approximately 1.2 x 10(-10) cm(3) molecule(-1) s(-1) for 300-2500 K) is 4-5 times larger than previous estimates, indicating that this reaction may be an important sink for OH in many combustion systems. The predicted rate coefficients for the (3)CH(2) + CH(3) and (3)CH(2) + (3)CH(2) reactions are found to be in good agreement with the range of available experimental measurements. Product branching in the self-reaction of methylene is discussed, and the C(2)H(2) + 2H and C(2)H(2) + H2 products are predicted in a ratio of 4:1. The effect of the present set of rate coefficients on modeling the secondary kinetics of methanol decomposition is briefly considered. Finally, the present set of rate coefficients, along with previous VRC-TST determinations of the rate coefficients for the self-reactions of CH(3) and OH and for the CH(3) + OH reaction, are used to test the geometric mean rule for the CH(3), (3)CH(2), and OH fragments. The geometric mean rule is found to predict the cross-combination rate coefficients for the (3)CH(2) + OH and (3)CH(2) + CH(3) reactions to better than 20%, with a larger (up to 50%) error for the CH(3) + OH reaction.     

Thermal decomposition of di-t-butyl peroxide in the presence of (CH3)2CCH2: Reactions of CH3, (CH3)2ĊCH2CH3, and (CH3)2ĊCH2C(CH3)2CH2CH3 radicals

A study of the reaction initiated by the thermal decomposition of di-t-butyl peroxide (DTBP) in the presence of (CH₃)₂C?CH₂ (B) at 391–444 K has yielded kinetic data on a number of reactions involving CH₃ (M·), (CH₃)₂CCH₂CH₃ (MB·) and (CH₃)₂?CH₂C(CH₃)₂CH₂CH₃ (MBB·) radicals. The cross-combination ratio for M· and MB· radicals, rate constants for the addition to B of M· and MB· radicals relative to those for their recombination reactions, and rate constants for the decomposition of DTBP, have been determined. The values are, respectively, where θ = RT ln 10 and the units are dm^3/2 mol^?1/2 s^?1/2 for k₂/k and k₉/k, s^?1 for k₀, and kJ mol^?1 for E. Various disproportionation-combination ratios involving M·, MB·, and MBB· radicals have been evaluated. The values obtained are: Δ₁(M·, MB·) = 0.79 ± 0.35, Δ₁(MB·, MB·) = 3.0 ± 1.0, Δ₁(MBB·, MB·) = 0.7 ± 0.4, Δ₁(M·, MBB·) = 4.1 ± 1.0, Δ₁(MB·, MBB·) = 6.2 ± 1.4, and Δ₁(MBB·, MBB·) = 3.9 ± 2.3, where Δ₁ refers to H-abstraction from the CH₃ group adjacent to the center of the second radical, yielding a 1-olefin. © 1994 John Wiley & Sons, Inc.     

System-dependent dispersion coefficients for the DFT-D3 treatment of adsorption processes on ionic surfaces

Dispersion-corrected density functional theory calculations (DFT-D3) were performed for the adsorption of CO on MgO and C(2) H(2) on NaCl surfaces. An extension of our non-empirical scheme for the computation of atom-in-molecules dispersion coefficients is proposed. It is based on electrostatically embedded M(4)X(4) (M=Na, Mg) clusters that are used in TDDFT calculations of dynamic dipole polarizabilities. We find that the C(MM)(6) dispersion coefficients for bulk NaCl and MgO are reduced by factors of about 100 and 35 for Na and Mg, respectively, compared to the values of the free atoms. These are used in periodic DFT calculations with the revPBE semi-local density functional. As demonstrated by calculations of adsorption potential energy curves, the new C(6) coefficients lead to much more accurate energies (E(ads)) and molecule-surface distances than with previous DFT-D schemes. For NaCl/C(2) H(2) we obtained at the revPBE-D3(BJ) level a value of E(ads) =-7.4 kcal mol(-1) in good agreement with experimental data (-5.7 to -7.1 kcal mol(-1)). Dispersion-uncorrected DFT yields an unbound surface state. For the MgO/CO system, the computed revPBE-D3(BJ) value of E(ads) =-4.1 kcal mol(-1) is also in reasonable agreement with experimental results (-3.0 kcal mol(-1)) when thermal corrections are taken into account. Our new dispersion correction also improves computed lattice constants of the bulk systems significantly compared to plain DFT or previous DFT-D results. The extended DFT-D3 scheme also provides accurate non-covalent interactions for ionic systems without empirical adjustments and is suggested as a general tool in surface science.     

Isomerization of CH3O+=CHCH3 to CH2=O+CH2CH3

Ab initio calculations establish that CH₃O⁺=CHCH₃ (1) rearranges in gas phase isolation to CH₂=O⁺C₂H₅ (2) directly rather than through CH₃OCH₂CH ₂ ⁺ (3). The reaction is predicted to be antarafacial, in accord with the Woodward-Hoffmann (W-H) predictions. We predict an activation energy of 212.0 kJ/mol for this process at the QCISD(T)/6-311G**//MP2/6-311G** level. We also reinvestigated the degenerate rearrangement of CH₃O=CH ₂ ⁺ by a 1,3-sigmatropic shift. The W-H model is not a good one for the transition state (TS) for the latter reaction because the π bonding has been completely broken off. That TS is stabilized by three-center bonding between the carbons and the hydrogen being transferred. We also examined the questions of the importance of polarization functions on hydrogen and a set of outer valence functions on all the atoms in describing these hydrogen transfer TSs, and whether it is necessary to include these functions in the TS optimization runs. For the rearrangements we studied, polarization functions on hydrogen are crucial only for 1,2 hydrogen shifts. The 6-31G* basis set is adequate and good for the optimization of TSs of other ring sizes. For the 1,3 and 1,4 shifts we examined, a combination of both outer valence functions and polarization functions on hydrogen causes reductions in the computed activation energies ranging from 5.9 kJ/mol for the 1,4 shift at the RHF level to 15.6 kJ/mol for the 1,3 shift at the MP2 level.     

Direct dynamics studies on hydrogen abstraction reactions of CH3CHFCH3 and CH3CH2CH2F with OH radicals

The hydrogen abstraction reactions of CH3CHFCH3 and CH3CH2CH2F with the OH radicals have been studied theoretically by a dual-level direct dynamics method. The geometries and frequencies of all the stationary points are optimized by means of the DFT calculation. There are complexes at the reactant side or exit route, indicating these reactions may proceed via indirect mechanisms. To improve the reaction enthalpy and potential barrier of each reaction channel, the single point energy calculation is performed by the MC-QCISD/3 method. The rate constants are evaluated by canonical variational transition state theory (CVT) with the small-curvature tunneling correction method (SCT) over a wide temperature range 200-2000 K. The canculated CVT/SCT rate constants are consistent with available experimental data. The results show that both the variation effect and the SCT contribution play an important role in the calculation of the rate constants. For reactions CH3CHFCH3 and CH3CH2CH2F with OH radicals, the channels of H-abstraction from -CHF- and -CH2- groups are the major reaction channels, respectively, at lower temperature. Furthermore, to further reveal the thermodynamics properties, the enthalpies of formation of reactants CH3CHFCH3, CH3CH2CH2F, and the product radicals CH3CFCH3, CH3CHFCH2, CH3CH2CHF, CH3CHCH2F, and CH2CH2CH2F are studied using isodesmic reactions.     

Effect of solvation on the dynamics of H + CH3 association

The gas phase association of CH₃ with the HAr₂ cluster to form a vibrationally/rotationally excited CH ₄ ^* molecule is used as a model to study microscopic solvation dynamics. A potential energy surface for the reactive system is constructed from a previously fitted H + CH₃ ab initio potential and 12-6 Lennard-Jones Ar-Ar, Ar-C, and Ar-H potentials. Classical trajectory calculations performed with the chemical dynamics computer program VENUS are used to investigate the CH₃ + HAr₂ → CH ₄ ^* + Ar₂ reaction dynamics. Reaction is dominated by a mechanism in which the CH₃ “strips” the H-atom from HAr₂ during large impact parameter collisions. For a large initial relative translational energy the CH₃ + HAr₂ → CH ₄ ^* + Ar₂ cross section is the same as that for H + CH₃ association, so that HAr₂ acts like a “heavy” H-atom. However, at a low initial relative translational energy, the long-range Ar₂—CH₃ attractive potential apparently makes the CH₃ + HAr₂ association cross section larger than that for H + CH₃. Partitioning of energy to the CH ₄ ^* and Ar₂ products is consistent with a stripping mechanism. The initial and final relative translational energies are nearly identical and the CH ₄ ^* rotational energy is controlled by the initial CH₃ rotational energy. The velocity and orbital tilt scattering angles, θ(v _i ,v _f ) and θ(l _i ,l _f ), respectively, are consistent with the stripping mechanism. On average only a small amount of the product energy is partitioned to Ar₂ vibration/rotation and CH ₄ ^* + Ar₂ relative translation.     

Effect of selected dopants on conductivity and moisture stability of Li3PS4 sulfide solid electrolyte: a first-principles study

The first principle computational screening was performed to investigate the effect of selected dopants for Li₃PS₄ sulfide solid electrolyte on its ionic conductivity and stability toward moisture. The results suggest that substitution P⁵⁺ using isovalent cations whose electronegativity (EN) value is closer to the value of S has more significant effects on the ionic conductivity, whereby W⁵⁺ and Sb⁵⁺ can improve most. Similarly, aliovalent cation substitutions with compensating changes in the lithium-ion concentration, particularly those with a lower oxidation state and higher EN, such as Cu²⁺, effectively enhance the lithium-ion conductivity in this structure. For cation dopants, it is found that ionic conductivity improvement of Li₃PS₄ is the synergetic effect of EN and oxidation number of the dopant as well as the material's lattice parameter change. Oxides of the considered cation dopants can also improve the ionic conductivity of the material but have much lower lithium-ion conductivity than the cases of cation dopants. However, the metal oxide dopants, particularly those derived from soft Lewis' acid cations, show a marginal improvement in moisture stability of the Li₃PS₄ electrolyte. The effect of halides and metal halide dopants on the lithium-ion conductivity and moisture stability of Li₃PS₄ electrolyte are also studied. It is found that metal halides are more effective than any other dopants in improving the ionic conductivity of Li₃PS₄.