Interaction of a New Fluorescent Probe with DNA and its Use in Determination of DNA

In this paper we reported a metal complex 1-Zn (2,5-di-[2-(3,5-bis(2-pyridylmethyl)amine-4-hydroxy-phenyl)-ethylene]-pyrazine-Zn) as a fluorescent probe sensing DNA. The result of the competitive experiment of the probe with ethidium bromide (EB) to bind DNA, absorption spectral change and polarization change in the presence and absence of DNA revealed that interaction between the probe and DNA was via intercalation. Ionic strength experiment showed the existence of electrostatic interaction as well. Scatchard plots also confirmed the combined binding modes. The fluorescence enhancement of the probe was ascribed to highly hydrophobic environment when it bound the macromolecules such as DNA, RNA or denatured DNA. The binding constant between the probe and DNA was estimated as 3.13 × 10⁷ mol⁻¹ L. The emission intensity increase was proportional to the concentration of DNA. Based on this, the probe was used to determine the concentration of calf thymus DNA (ct-DNA). The corresponding linear response ranged from 2.50 × 10⁻⁷ to 4.75 × 10⁻⁶ mol L⁻¹, and detection limit was 1.93 × 10⁻⁸ mol L⁻¹ for ct-DNA.     

Fluorescence Interaction and Determination of Calf Thymus DNA with Two Ethidium Derivatives

In this paper, we reported the syntheses and investigation of the modes of binding to DNA of the two new ethidium derivatives containing benzoyl and phenylacetyl groups of both amines at 3-and 8- positions. The interactions between calf thymus DNA (ct-DNA) and the two derivatives, 3,8-dibenzoylamino-5-ethyl-6-phenylphenantridinium cloride (E2) and 3,8-diphenylacetylamino-5-ethyl-6-phenylphenantridinium chloride (E3), were investigated by fluorescence quenching spectra and UV-vis absorption spectra. The Stern-Volmer quenching constants, binding constants, binding sites and the corresponding thermodynamic parameters ΔH, ΔS and ΔG were calculated at different temperatures. The results indicated the formation of E2 and E3-DNA complexes and van der Waals interactions as the predominant intermolecular forces in stabilizing for each complex. In addition, increasing nucleophilicity of the functional groups at 3- and 8- positions exhibited the respectable increment the DNA binding affinities of derivatives. The results of absorption, ionic strength and iodide ion quenching suggested that the interaction mode of E2 and E3 with ct-DNA was intercalative binding. The limit of detection (LOD) of ct-DNA were 7.49 × 10⁻⁸ (n = 4) and 4.18 × 10⁻⁸ mol/l (n = 7) in presence of E2 and E3, respectively.     

Sonochemical synthesis and characterization of new one-dimensional manganese(II) coordination polymer nanostructures

A new Mn(II) coordination polymer, [Mn (L₁)₂(NCS)₂]_n (1) [L₁ = 3,4-bis(4-pyridyl)-5-(2-pyridyl)-1,2,4-triazole] was synthesized by the reaction of ligand L₁ and mixtures of manganese(II) acetate and potassium thiocyanate using the heat gradient method. Compound 1 has been characterized by IR spectroscopy, elemental analyses and X-ray crystallography. The crystal structure of compound 1 was determined by single-crystal X-ray diffraction and shows a new interesting one-dimensional coordination polymer. Nanostructures of compound 1 have been synthesized by sonochemical method. The products were characterized by X-ray powder diffraction, scanning electron microscopy (SEM), and IR spectroscopy. The thermal stability of nano particles of compound 1 was studied by thermal gravimetric and differential thermal analyses.     

Application of modificated magnetic nanomaterial for optimization of ultrasound-enhanced removal of Pb2+ ions from aqueous solution under experimental design: Investigation of kinetic and isotherm

Magnetic γ-Fe₂O₃ nanoparticles modificated by bis(5-bromosalicylidene)-1,3-propandiamine (M-γ-Fe₂O₃-NPs-BBSPN) and characterized by field emission scanning electron microscopy (FE-SEM), Fourier transforms infrared spectroscopy (FT-IR) and X-ray diffraction (XRD). This modified compound as novel adsorbent was applied for the ultrasound-assisted removal of Pb²⁺ ion in combination with flame atomic absorption spectroscopy (FAAS). The influences of the effective parameters including initial Pb²⁺ ion concentration, pH, adsorbent mass and ultrasound time were optimized by central composite design (CCD). Maximum removal percentage of Pb²⁺ ion which obtained at 25 mg L⁻¹ of Pb²⁺, 25 mg of adsorbent and 4 min mixing with sonication at pH 6.0. The precision of the equation obtained by CCD was confirmed by the analysis of variance and calculation of correlation coefficient relating the predicted and the experimental values of removal percentage of Pb²⁺ ion. The kinetic and isotherm of ultrasound-assisted removal of Pb²⁺ ion was well described by second-order kinetic and Langmuir isotherm model with maximum adsorption capacity of 163.57 mg g⁻¹.     

Spectrophotometric Characteristics of New Pyridylindolizine Derivatives Solutions

Three new pyridylindolizine derivatives, 1, 2, 3-tricarbometoxi-7-(4-pyridyl)-pyrrolo[1, 2-a]pyridine (I), 1,2-dicarboethoxy-3-(4-bromobenzoyl)-7-(4-pyridyl)-pyrrolo[1,2-a]pyridine (II) and its isomer 1,2-dicarboethoxy-3- (4-bromobenzoyl) -5- (2-pyridyl) -pyrrolo[1, 2-a]pyridine (III) have been investigated in different solutions by UV-VIS absorption, steady-state, and time-resolved fluorescence methods. The effects of the substituent and solvent on the spectroscopic properties have been demonstrated. The fluorescence decay data could be fitted to a single-exponential function. The lifetime values are higher in protic polar than in aprotic apolar solvents for compound I. In the case of compounds II and III the fluorescence intensities and lifetimes are very low, with the exception of III in aprotic solvents. The absorption and fluorescence properties of the compounds showed a solvent dependence.     

Sonochemical effect on two new Ruthenium(II) complexes with ligand (E)-N-((6-bromopyridin-2-yl)methylene)-4-(methylthio)aniline precursors for synthesis of RuO2 nanoparticles

Two novel Ru(II) complexes [(η⁶-p-cymene)RuCl(L2)]PF₆ (R2) and [(η⁶-C₆H₆)RuCl(L2)]PF₆ (R4), with ligand (E)-N-((6-bromopyridin-2-yl)methylene)-4-(methylthio)aniline (L2), were synthesized and characterized by elemental analysis, ¹H NMR, ¹³C NMR and IR spectroscopy. Based on X-ray crystallography studies, complexes R2 and R4 have coordination environments with formulated (η⁶-p-cymene)Ru(N₂Cl) and (η⁶-C₆H₆)Ru(N₂Cl), respectively. The thermal stabilities of compounds R2 and R4 were studied by thermal gravimetric (TG) and differential scanning calorimetry (DSC). Thermal decomposition of these complexes was at 280 °C and 260 °C under air atmosphere respectively. The interaction of these complexes with calf thymus DNA (CT-DNA) was explored through electronic absorption spectra, fluorescence and redox behavior studies. The results showed that the complexes bind to CT-DNA with electrostatic interactions. Nanoparticles of RuO₂ were prepared by calcination of R2 and R4. Also the role of the ultrasound waves on the characteristics of the RuO₂ nanoparticles was studied. The nanoparticles were characterized by IR spectroscopy and X-ray diffraction (XRD). Also size and morphology of nanoparticles were studied by scanning electron microscopy (SEM).     

Interaction between 1-[p-(dimethylamino) benzoyl]-4′-phenyl-semicarbazide and Cu

A new compound, 1-[p-(dimethylamino)benzoyl]-4′-phenyl-semicarbazide (1) was synthesized and showed highly selective response to Cu²⁺ over other metal ions such as Pb²⁺, Mg²⁺, Fe²⁺, Co²⁺, Zn²⁺, Cd²⁺, Hg²⁺, Ni²⁺, Ca²⁺, Ag⁺, Na⁺, K⁺, and Li⁺. The control compound, 1-[p-(dimethylamino)benzoyl]-4-phenyl-thiosemicarbazide (2), showed different fluorescence spectral response to Cu²⁺. A 1:1 complex between Cu²⁺ and 1 was formed while 1:1 and 1:2 complexes between Cu²⁺ and 2 were formed. The binding model between the receptor (1 or 2) and Cu²⁺ was supported by IR spectra, mass spectra, and computation model. 1 possessed higher selectivity towards Cu²⁺ compared with 2 owing to the difference of complexation ability between urea and thiourea groups.     

Spectrophotometric Determination of Lead with 2-(5-Bromo-2-pyridylazo)-5-diethylaminophenol and Cetyltrimethylammonium Bromide

Abstract

A new spectrophotometric method was employed for the determination of lead (II) based on the ternary complex formation with 2-(5-Bromo-2-Pyridylazo)-5-diethylaminophenol(5-BrPADAP) and cetyltri-methyl-ammonium bromide (CTAB). At pH 7.00 a violet ternary complex, whose molar absorptivity is 5.1×10⁴ 1.mole^?1 cm^?1 at 575 nm, is formed. Beer's law range (0.5 ? 4.9 μg ml^?1 of lead), the apparent stability constant (log β=9.90) and δG° were evaluated. A large number of ions do not interfer at pH 7.00 because they form complexes with 5-Br-PADAP at higher pH's (< 9.40) or at lower pH's (> 4.86). The method offers the advantages of simplicity and requires no extraction.     

Spectroscopic investigation of the interaction between thiourea-zinc complex and serum albumin

The interaction between 1-Zn (N-p-(dimethylamino)benzamido-N′-phenylthiourea-zinc) complex and serum albumins was studied. In the presence of proteins such as BSA or HSA, the fluorescence spectrum of 1 did not change. However, the fluorescence intensity of its zinc complex (1-Zn) was greatly enhanced. It was ascribed to the fact that zinc ion promoted the interaction between 1 and proteins. Therefore, it was concluded that zinc ion could facilitate bioactivity of thiourea derivative drugs. Energy transfer occurred between 1-Zn and the proteins, which led to decrease of proteins’ emission and increase of 1-Zn’s emission. The fluorescence quenching of serum albumins by 1-Zn was considered as a static quenching process. The binding constants between 1-Zn and serum albumins were estimated as 1.02×10¹² mol⁻¹ L for BSA and 1.32×10¹⁰ mol⁻¹ L for HSA, respectively, and the number of binding sites was 2 for both. The effect of 1-Zn on the conformation of serum albumins was further investigated using synchronous fluorescence spectrometry and the results implied that tyrosine residues of proteins were closer to 1-Zn than tryptophan residues.     

High light electroluminescence of novel Cu(I) complexes

Three novel Cu(I) complexes, [CuDPEphos(NN)]BF₄, where NN=1-(4-5′-phenyl-1,3,4-oxadiazolylbenzyl)-2-pyridinylbenzoimidazole (OXD-Pybm; L1) (1), 1-(4-carbazolylbutyl)-2-pyridinylbenzimidazole (Carl-Pybm; L2) (2), and 1-H-2-pyridinylbenzimidazole (HPybm; L3) (3), were synthesized. The photoluminescent (PL) properties of 1-3 and the electroluminescent (EL) properties of complexes 1 and 2 were systematically studied. The maximum brightness of 2-based devices was 8669 cd/m², which should be the best among the reported Cu(I) complexes-based devices.     

Synthesis and characterization of a new nano lead(II) 0-D coordination supramolecular compound: A precursor to produce pure phase nano-sized lead(II) oxide

Nano-structure of a new 0D Pb(II) coordination supramolecular compound, [Pb₄(8-Quin)₆](ClO₄)₂(1), L = 8-HQuin = 8-hydroxyquinolin ligand has been synthesized by use of a sonochemical process and characterized by scanning electron microscopy (SEM), X-ray powder diffraction (XRPD), Fourier transform infrared spectroscopy (FTIR) and elemental analyses. The structure of compound 1 was determined by single-crystal X-ray diffraction. The single crystal X-ray data of compound 1 implies that the Pb⁺² ions are five coordinated. Each lead atom is coordinated to nitrogen and oxygen atoms of 8-hydroxyquinolin ligand. Topological analysis shows that the compound 1 is 1,2,3,4,4M12-1net. Nanoparticles of lead(II) oxide have been prepared by calcination of lead(II) coordination polymer at 500 °C that were characterized by scanning electron microscopy (SEM), X-ray powder diffraction (XRPD) and IR spectroscopy.     

A new coumarin laser dye 3-(benzothiazol-2-yl)-7-hydroxycoumarin

The electronic absorption, and emission spectra as well as fluorescence quantum yield of 3-(benzothiazol-2-yl)-7-hydroxycoumarin (BTHC) were measured in different solvents and are affected by solvent polarity (Δf). The deprotonation of BTHC by triethylamine is a reversible process. BTHC is relatively photostable, the quantum yield of photodecomposition (φ_c) was found to be 2×10⁻⁴ and 2.7×10⁻⁴ in EtOH and DMF, respectively. The fluorescence lifetimes of BTHC were measured in the absence and in the presence of molecular oxygen and were found to be 2.82 and 2.78 ns, respectively. BTHC acts as good laser dye upon pumping with nitrogen laser (λ_ex=337.1 nm) in ethanol and gives laser emission with maxima at 508 and 522 nm.     

2-Amino-5-(4-pyridinyl)-1,3,4-thiadiazole film at the silver surface: Observation by Raman spectroscopy and electrochemical methods

Surface enhanced Raman scattering (SERS) spectrum of the 2-amino-5-(4-pyridinyl)-1,3,4-thiadiazole (4-APTD) on the silver surface was recorded and assigned with the help of B3LYP/6-311G** method. SERS result explored that 4-APTD molecule with a tilted orientation anchored at the silver surface via N¹², S¹ and C² atoms. In situ SERS spectroelectrochemical experiment indicated 4-APTD molecule experienced an intermediate adsorption process of its thiadiazole ring moiety with the vertical orientation at the surface before the 4-APTD molecule detached completely from the surface as the potential applied at −1.3 V vs. SCE. Electrochemical impedance spectroscopy (EIS) and polarization experiments exhibited the sound anticorrosive effect of the 4-APTD film on silver surface with an efficiency of 89.5%.     

High-resolution FTIR spectroscopy of HNSO—Analysis of the highly perturbed ν4, ν6 and 2ν5 bands

We report a rovibrational analysis of the ν₄ and ν₆ fundamentals and the 2ν₅ overtone of HNSO from high-resolution Fourier transform infrared spectra. The ν₆ band (out-of-plane bend) centred at 757.5 cm⁻¹ is c-type. The ν₄ band (HNS bend) centred at 905.9 cm⁻¹ is predominantly a-type with a very weak b-type component (). Numerous global perturbations and localized avoided crossings affecting the v₄ = 1 rotational levels were successfully treated by inclusion of Fermi and c-axis Coriolis resonance terms between v₄ = 1 and v₅ = 2, and a b-axis Coriolis resonance term between v₄ = 1 and v₆ = 1. The latter term gives rise to an avoided crossing with an extraordinary ΔK_a = 5 selection rule. The Fermi resonance between v₄ = 1 and v₅ = 2 gives rise to strong mixing of their rotational wavefunctions in the vicinity of K_a = 18. The resultant borrowing of intensity made it possible for 2ν₅ transitions in the range K_a = 16–19 to be assigned and included in a global rovibrational treatment of all three band systems.     

Sonochemical synthesis of two new nano structure zinc(II) 1,10-phenanthroline coordination supramolecular compounds: New precursors to produce nano-sized zinc(II) oxide

Nanoparticles of two zinc(II) coordination supramolecule compounds (CSCs), [Zn(L)Cl2] (1) and [Zn(L)Br2] (2) L = 1,10-phen = 1,10-phenanthroline ligand, have been synthesized by use of a sonochemical process and characterized by scanning electron microscopy (SEM), X-ray powder diffraction (XRPD), Fourier transform infrared (FTIR) spectroscopy and elemental analyses. The single crystal X-ray data of compounds 1 and 2 imply that the Zn⁺² ions are four coordinated. Topological analysis shows that the compound 1 and 2 are new topology for net: 1,3M4-1. Nanoparticles of zinc(II) oxide have been prepared by calcination of two different zinc(II) CPs at 500 °C that were characterized by scanning electron microscopy (SEM), X-ray powder diffraction (XRD) and IR spectroscopy.     

Photochemical Behavior of Lysozyme-4-(2-pyridylazo)-resorcinol Polymolecular Complex and Its Analytical Applications

It was first found that 4-(2-pyridylazo)-resorcinol (PAR) can combine with lysozyme forming a polymolecular complex, with the molar ratio of 1:12 (lysozyme/PAR) in the medium of acetate buffer (pH 6.0). The fluorescence spectra suggested that PAR molecules may produce self-aggregation, and it was suggested that there are interactions between lysozyme and PAR possibly mainly on the cooperation of hydrophobic, electrostatic actions and chelate bond. The coordination complex of lysozyme-PAR can cause an enhanced resonance light scattering (RLS) signal with the scattering peak located at 521 nm. The increment of RLS intensity was linear with the concentration of lysozyme over the range from 1 ng mL^-1 to 30.0 μg mL^-1, with the limit of detection of 0.3 ng mL⁻¹ (3σ, n = 5). Effect of experimental conditions, including temperature, pH, concentration of PAR, and the ionic strength on RLS were also tested. The proposed RLS method was successfully applied to analyze lysozyme in hen egg white, human saliva and tear samples without any special pretreatment. Compared with other methods, the proposed procedure is of high sensitivity and selectivity.     

A Highly Sensitive and Selective Fluorescent Chemodosimeter for Hg<Superscript>2+</Superscript> in Neutral Aqueous Solution

A fluorescent assay of Hg²⁺ in neutral aqueous solution was developed using N-[p-(dimethylamino)benzamido]-N′-phenylthiourea (1). 1’s fluorogenic chemodosimetric behaviors towards various metal ions were studied and a high sensitivity as well as selectivity was achieved for Hg²⁺. It was because of a strongly fluorescent 1,3,4-oxadiazoles which was produced by the Hg²⁺ promoted desulfurization reaction. The spectra of ESI mass and IR provided evidences for this reaction. According to fluorescence titration, a good linear relationship ranging from 1.0 × 10⁻⁷ to 2.0 × 10⁻⁵ mol l⁻¹ was obtained with the limit of detection as 3.1 × 10⁻⁸ mol l⁻¹. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

THE REACTION OF 5-METHYL-3-(o-TOLYL)RHODANINE WITH ACETONE-d6 AND METHANOL

5-Methyl-3-(o-tolyl)rhodanine was found to react with acetone-d₆ and methanol at the 5-position of the heterocyclic ring. The reactions have been followed and the products have been identified by ¹H NMR.     

Electrochemical synthesis of nanocrystalline zinc oxide and phase transformations of zinc hydroxides

Nanoscaled ZnO was synthesized by an electrochemical process using zinc or Al-alloyed zinc electrodes in an aqueous system with acetic acid as a conductive salt. Depending on the synthetical parameters, the precipitated precursor solids were found to consist of various compounds such as zincite, presumably δ-Zn(OH)₂, β₁-Zn(OH)₂, ε-Zn(OH)₂, Zn₅(CO₃)₂(OH)₆ and, in case an Al-alloyed electrode was used for the synthesis, Zn_0.71Al_0.29(OH)₂ (CO₃)_0.145·xH₂O. The intermediate solids served as precursors for the subsequent thermal treatment resulting in zincite powders with various morphologies. Depending on the processing conditions, zincite was formed between 100 and 260 °C with a mean crystallite size between 6 and 25 nm. Selected zincite powders were pressed to pellets, sintered at temperatures between 900 and 1,100 °C and characterized by measurements of the electrical bulk conductivities, yielding values up to 1.69 S cm⁻¹ in samples with 1.24 wt% Al. Comparison with samples prepared by precipitation methods showed that the latter had values of up to 44 S cm⁻¹.     

Synthesis,characterization and luminescence study of dimethyl[N-arylmethylenethiobenzahydrazonato]indium

Five dimethylindium complexes of type Me₂InL [L = N-(4-methoxy)benzylidenethiobenzahydrazonato (1), N-(3,4-dimethoxy)benzylidenethiobenzahydrazonato (2), N-(4-N,N-dimethylamino)benzylidenethiobenzahydrazonato (3), N-(2-naphthyl)methylene thiobenzahydrazonato (4) and N-(9-anthryl)methylenethiobenzahydrazonato (5)] have been synthesized by reaction of trimethylindium with appropriate N-arylmethylenethiobenzahydrozones. The complexes obtained have been characterized by elemental analysis, ¹H NMR, IR and mass spectroscopy. Compounds 1–5 emit blue colors at λ_max = 432–479 nm when irradiated by UV light. The electroluminescent (EL) properties of 1–5 were examined by fabricating EL devices using 1–5 as emitter, respectively. The EL bands are located in the green region (513–578 nm).