A Geometrical Model for Chemically Bonded TMS and PDS Phases

Abstract

A geometrical model is developed for monomeric TMS and PDS phases that are chemically bonded to silica. Using experimental data for maximum surface coverage and considering amorphous silica as a collection of distorted crystals, we calculate that each nm² of the silica surface contains 2.3 modified hydroxyl groups, 1.3 free hydroxyl. groups and 0.6 pairs of bonded hydroxyl groups, respectively. From the dimensions of the silane molecule it is concluded that for maximum coverage the TMS and PDS molecules are rigidly attached to the silica surface with an Si-O-Si bond angle between 120 and 140 degrees. The unreacted hydroxyl groups are not completely screened but will be quite inaccessible on either phase. Very little free surface area remains on the silica surface.     

The role of water in synthesised hydrotalcites of formula Mg(x)Zn(6 - x)Cr2(OH)16(CO3) x 4H2O and Ni(x)Co(6 - x)Cr2(OH)16(CO3) x 4H2O--an infrared spectroscopic study

Infrared spectroscopy has been used to characterise synthesised hydrotalcites of formula Mg(x)Zn(6 - x)Cr2(OH)16(CO3) x 4H2O and Ni(x)Co(6 - x)Cr2(OH)16(CO3) x 4H2O. The infrared spectra are conveniently subdivided into spectral features based (a) upon the carbonate anion (b) the hydroxyl units (c) water units. Three carbonate antisymmetric stretching vibrations are observed at around 1358, 1387 and 1482 cm(-1). The 1482 cm(-1) band is attributed to the CO stretching band of carbonate hydrogen bonded to water. Variation of the intensity ratio of the 1358 and 1387 cm(-1) modes is linear and cation dependent. By using the water bending band profile at 1630 cm(-1) four types of water are identified (a) water hydrogen bonded to the interlayer carbonate ion (b) water hydrogen bonded to the hydrotalcite hydroxyl surface (c) coordinated water and (d) interlamellar water. It is proposed that the water is highly structured in the hydrotalcite interlayer as it is hydrogen bonded to both the carbonate anion, adjacent water molecules and the hydroxyl surface.     

Molecular assembly in synthesised hydrotalcites of formula Cu(x)Zn(6 - x)Al2(OH)16(CO3) x 4H2O--a vibrational spectroscopic study

Infrared and Raman spectroscopy have been used to characterise synthetic hydrotalcites of formula Cu(x)Zn(6 - x)Al2(OH)16(CO3) x 4H2O. The spectra have been used to assess the molecular assembly of the cations in the hydrotalcite structure. The spectra may be conveniently subdivided into spectral features based (a) upon the carbonate anion (b) the hydroxyl units (c) water units. The Raman spectra of the hydroxyl-stretching region enable bands to be assigned to the CuOH, ZnOH and AlOH units. It is proposed that in the hydrotalcites with minimal cationic replacement that the cations are arranged in a regular array. For the Cu(x)Zn(6 - x)Al2(OH)16(CO3) x 4H2O hydrotalcites, spectroscopic evidence suggests that 'islands' of cations are formed in the structure. In a similar fashion, the bands assigned to the interlayer water suggest that the water molecules are also in a regular well-structured arrangement. Bands are assigned to the hydroxyl stretching vibrations of water. Three types of water are identified (a) water hydrogen bonded to the interlayer carbonate ion (b) water hydrogen bonded to the hydrotalcite hydroxyl surface and (c) interlamellar water. It is proposed that the water is highly structured in the hydrotalcite as it is hydrogen bonded to both the carbonate anion and the hydroxyl surface.     

Raman spectroscopic study of the hydrotalcite desautelsite Mg6Mn2CO3(OH)16 x 4H2O

The structure of the hydrotalcite desautelsite Mg6Mn2CO3(OH)16.4H2O has been studied by a combination of Raman and infrared spectroscopy. Three intense Raman bands are observed at 1086, 1062 and 1055 cm(-1). A model based upon the observation of three CO3 stretching vibrations is presented. The CO3 anion may be (a) non-hydrogen bonded, (b) hydrogen bonded to the interlayer water and (c) hydrogen bonded to the brucite-like hydroxyl surface. Two intense bands at 3646 and 3608 cm(-1) are attributed to MgOH and MnOH stretching vibrations. Infrared bands at 3476, 3333, 3165 and 2991 cm(-1) are assigned to water stretching bands. Raman spectroscopy has proven a powerful tool for the study of hydrotalcite minerals.     

The formation mechanism of cobalt silicide on silica from Co(SiCl3)(CO)4 by in situ Fourier transform infrared spectroscopy

Silica supported CoSi particles were synthesized by metal organic chemical vapor deposition of the Co(SiCl(3))(CO)(4) precursor carried in hydrogen at atmospheric pressure and moderate temperature in a fluidized bed reactor. In contrast, CoCl(2) supported on silica was formed by using argon as the carrier gas. The samples were characterized by X-ray diffraction, transmission electron microscopy, ultraviolet-visible spectroscopy, and thermogravimetric/differential thermogravimetric analysis. The precursor Co(SiCl(3))(CO)(4) reacted with the hydroxyl groups of amorphous silica via loss of HCl and introduced cobalt species onto the surface. The decomposition mechanism of the supported precursor on silica was investigated by in situ Fourier transform infrared spectroscopy from room temperature to 300 °C in a hydrogen or argon atmosphere. The results showed that CO and HCl elimination occurred in a hydrogen atmosphere, while only CO elimination occurred in Ar. All of the results showed that it was possible to prepare supported CoSi at lower temperatures via changing the carrier gas.     

Gas phase RNA and DNA ions 2. Conformational dependence of the gas-phase H/D exchange of nucleotide-5′-monophosphates

The conformational dependence of the gas-phase hydrogen/deuterium (H/D) exchange of nucleotide-5-monophosphate anions with the H/D exchange reagent D2S is reported here. The electrospray-generated [M-H]- anions of adenosine-5'-monophosphate, adenosine-5'-carboxylic acid, ribitol-5-phosphate, and 2-deoxy-ribitol-5-phosphate were reacted with D2S in the gas phase. Their reactivity (adenosine-5'-monophosphate exchanged 2 of 5 labile hydrogens, adenosine-5'-carboxylic acid exchanged 1 of 4, ribitol-5-phosphate exchanged 2 of 3, and 2-deoxy-ribitol-5-phosphate exchanged 1 of 2) suggests that the hydroxyl group in the 2 position of the ribose sugar and the amino hydrogen on the nucleobase do not exchange readily with D2S. Semiempirical molecular orbital calculations suggest that the labile hydrogens in these positions are thermodynamically facile to exchange but as a conformation inaccessible to the presumed phosphate anion, consistent with a mechanism in which the phosphate anion complexes with the exchange reagent and assists H/D exchange at a neighboring site.     

Water-enhanced low-temperature CO oxidation and isotope effects on atomic oxygen-covered Au(111)

Water-oxygen interactions and CO oxidation by water on the oxygen-precovered Au(111) surface were studied by using molecular beam scattering techniques, temperature-programmed desorption (TPD), and density functional theory (DFT) calculations. Water thermally desorbs from the clean Au(111) surface with a peak temperature of approximately 155 K; however, on a surface with preadsorbed atomic oxygen, a second water desorption peak appears at approximately 175 K. DFT calculations suggest that hydroxyl formation and recombination are responsible for this higher temperature desorption feature. TPD spectra support this interpretation by showing oxygen scrambling between water and adsorbed oxygen adatoms upon heating the surface. In further support of these experimental findings, DFT calculations indicate rapid diffusion of surface hydroxyl groups at temperatures as low as 75 K. Regarding the oxidation of carbon monoxide, if a C (16)O beam impinges on a Au(111) surface covered with both atomic oxygen ( (16)O) and isotopically labeled water (H 2 (18)O), both C (16)O (16)O and C (16)O (18)O are produced, even at surface temperatures as low as 77 K. Similar experiments performed by impinging a C (16)O beam on a Au(111) surface covered with isotopic oxygen ( (18)O) and deuterated water (D 2 (16)O) also produce both C (16)O (16)O and C (16)O (18)O but less than that produced by using (16)O and H 2 (18)O. These results unambiguously show the direct involvement and promoting role of water in CO oxidation on oxygen-covered Au(111) at low temperatures. On the basis of our experimental results and DFT calculations, we propose that water dissociates to form hydroxyls (OH and OD), and these hydroxyls react with CO to produce CO 2. Differences in water-oxygen interactions and oxygen scrambling were observed between (18)O/H 2 (16)O and (18)O/D 2 (16)O, the latter producing less scrambling. Similar differences were also observed in water reactivity toward CO oxidation, in which less CO 2 was produced with (16)O/D 2 (16)O than with (16)O/H 2 (16)O. These differences are likely due to primary kinetic isotope effects due to the differences in O-H and O-D bond energies.     

Interaction of glycine with isolated hydroxyl groups at the silica surface: first principles B3LYP periodic simulation

The adsorption of a glycine molecule on a model silica surface terminated by an isolated hydroxyl group has been studied ab initio using a double-zeta polarized Gaussian basis set, the hybrid B3LYP functional, and a full periodic treatment of the silica surface/glycine system. The hydroxylated silica surface has been simulated using either a 2D slab or a single polymer strand cut out from the (001) surface of an all-silica edingtonite. A number of B3LYP-optimized structures have been found by docking glycine on the silica surface exploiting all possible hydrogen bond patterns. Whereas glycine is generally adsorbed in its neutral form, two structures show glycine adsorbed as a zwitterion, the surface playing the role of a "solid solvent" whereas intrastrand hydrogen bond cooperativity stabilizes the zwitterions. The adsorbed zwitterionic structures are no longer formed at a lower glycine coverage as simulated by enlarging the unit cell so as to break intrastrand hydrogen bonds, showing the importance of H-bond cooperativity in stabilizing the zwitterionic forms. Each structure has been characterized by computing its harmonic vibrational spectrum at the Gamma point, which also allowed us to calculate the free energy of adsorption. The experimental infrared features of chemical-vapor-deposited glycine on a silica surface are in agreement with those computed for glycine adsorbed in its neutral form and engaging three hydrogen bonds with the surface silanols, two of them involving the C=O bond and one originating from the glycine OH group. The NH(2) group plays only a minor role as a weak hydrogen bond donor.     

Analysis of surface structure and hydrogen/deuterium exchange of colloidal silica suspension by contrast-variation small-angle neutron scattering

The microscopic surface structure and hydrogen/deuterium exchange effect were investigated by contrast-variation small-angle neutron scattering (CV-SANS) for three different-sized amorphous colloidal silica aqueous suspensions. The results show that the fraction of hydrogen/deuterium exchange per nanoparticle, phiH/D, strongly depends on the size of silica nanoparticles. This finding supports that the hydrogen/deuterium exchange occurs exclusively within a finite surface layer of silica nanoparticles, while the inner component remained unchanged. Detailed analyses of the scattering intensity functions led to the estimation of (1) phiH/D and (2) the thickness of the surface layer as functions of the particle radius. The surface layer thickness was found to increase from 18 to 35 A with decreasing the particle radius from 165 to 71.2 A. The surface area per unit weight of silica estimated with the CV-SANS results are comparable to those reported in the literature.     

Investigating the quartz (1010)/water interface using classical and ab initio molecular dynamics

Two different terminations of the (1010) surface of quartz (α and β) interacting with water are simulated by classical (CMD) (using two different force fields) and ab initio molecular dynamics (AIMD) and compared with previously published X-ray reflectivity (XR) experiments. Radial distribution functions between hydroxyl and water show good agreement between AIMD and CMD using the ClayFF force field for both terminations. The Lopes et al. (Lopes, P. E. M.; Murashov, V.; Tazi, M.; Demchuk, E.; MacKerell, A. D. J. Phys. Chem. B2006, 110, 2782-2792) force field (LFF), however, underestimates the extent of hydroxyl-water hydrogen bonding. The β termination is found to contain hydroxyl-hydroxyl hydrogen bonds; the quartz surface hydroxyl hydrogens and oxygens that hydrogen bond with each other exhibit greatly reduced hydrogen bonding to water. Conversely, the hydroxyl hydrogen and oxygens that are not hydrogen bonded to other surface hydroxyls but are connected to those that are show a considerable amount of hydrogen bonding to water. The electron density distribution of an annealed surface of quartz (1010) obtained by XR is in qualitative agreement with electron densities calculated by CMD and AIMD. In all simulation methods, the interfacial water peak appears farther from the surface than observed by XR. Agreement among AIMD, LFF, and XR is observed for the relaxation of the near-surface atoms; however, ClayFF shows a larger discrepancy. Overall, results show that for both terminations of (1010), LFF treats the near-surface structure more accurately whereas ClayFF treats the interfacial water structure more accurately. It is shown that the number of hydroxyl and water hydrogen bonds to the bridging Si-O-Si oxygens connecting the surface silica groups to the rest of the crystal is much greater for the α than the β termination. It is suggested that this may play a role in the greater resistance to dissolution of the β termination than that of the α termination.     

Polyoxometalate grafting onto silica: stability diagrams of H3PMo12O40 on {001}, {101}, and {111} β-cristobalite surfaces analyzed by DFT

The process of grafting H(3)PMo(12)O(40) onto silica surfaces is studied using periodic density functional theory methods. For surfaces with a high hydroxyl coverage, the hydroxyl groups are consumed by the polyoxometalate protons, resulting in water formation and the creation of a covalent bond between the polyoxometalate and the surface, and mostly no remaining acidic proton on the polyoxometalate. When the surfaces are partially dehydroxylated and more hydrophobic, after temperature pretreatment, less covalent and hydrogen bonds are formed and the polyoxometalate tends to retain surface hydroxyl groups, while at least one acidic proton remains. Hence the hydroxylation of the surface has a great impact on the chemical properties of the grafted polyoxometalate. In return, the polyoxometalate species affects the compared stability of the partially hydroxylated silica surfaces in comparison with the bare silica case.     

Infrared spectra of geminal and novel triple hydroxyl groups on silica surface

We investigated the O---H stretching frequencies of geminal and triple hydroxyl groups on silica surface by FT-IR spectroscopy. The geminal and triple hydroxyl groups were individually prepared by the chemical reaction of alkylchlorosilane with surface isolated hydroxyl groups which are separated enough and following hydroxylation of surface chlorine groups. The O---H stretching frequencies of these generated geminal and triple hydroxyl groups were observed at frequencies by 2 and 3 cm⁻¹ lower than that of isolated ones, respectively. By heat treatment the triple hydroxyl groups are firstly eliminated, and secondly the geminal hydroxyl groups disappear. Lastly only isolated hydroxyl groups remain on silica surface.     

Epoxidation of olefins with a silica-supported peracid

Anhydrous [2-percarboxyethyl] functionalized silica (2a) is an advantageous oxidant for performing the epoxidation of olefins 1. Epoxides 3 do not undergo the ring-opening reactions catalyzed by the acidic silica surface, except for particularly activated cases such as styrene oxide. The hydrophilic and acidic character of the silica surface does not interfere with the directing effects exerted by allylic H-bond acceptor substituents. The alkenes 1 carrying hydroxyl groups react with silica-supported peracid 2a faster than unsubstituted alkenes, thus reversing the trend known for reactions with soluble peracids. These results are attributed to the H-bond interactions of substrate 1 with the silanol and carboxylic acid groups bonded to the silica surface.     

CO2 template synthesis of metal formates with a ReO3 net

The serendipitous discovery of CO2 as a template in the fabrication of ferric formate (1) has led to the preparation of serial metal(III) formates [MIII(HCOO)3.3/4CO2.1/4H2O.1/4HCOOH ]infinity (M = Fe(1), Al (2), Ga (3), and In(4)). The X-ray single-crystal determinations showed that the metals have octahedral geometries and are linked by HCOO- in the anti-anti style into a 3D ReO3 net, where CO2 molecules exist in cages of mmm symmetry and are hydrogen bonded to the formic CH groups. An X-ray powder diffraction (XRD) study revealed that 2 is identical to the documented [Al(HCOO)3.xH2O]. Further synthetic experiments and 13C NMR spectroscopy eventually confirmed that 2 should be formulated as [Al(HCOO)3.3/4CO2.1/4H2O.1/4HCOOH ]infinity, which for decades had been mistakenly given as [AlIII(HCOO)3.xH2O].     

Evaporation of water and uptake of HCl and HBr through hexanol films at the surface of supercooled sulfuric acid

Vacuum evaporation and molecular beam scattering experiments have been used to monitor the loss of water and dissolution of HCl and HBr in deuterated sulfuric acid at 213 K containing 0 to 100 mM hexanol. The addition of 1-hexanol to the acid creates a surface film of hexyl species. This film becomes more compact with decreasing acidity, ranging from approximately 62% to approximately 68% of maximum packing on 68 to 56 wt % D(2)SO(4), respectively. D(2)O evaporation from 68 wt % acid remains unaltered by the hexyl film, where it is most porous, but is impeded by approximately 20% from 56 and 60 wt % acid. H --> D exchange experiments further indicate that the hexyl film on 68 wt % acid enhances conversion of HCl and HBr into DCl and DBr, which is interpreted as an increase in HCl and HBr entry into the bulk acid. For this permeable hexyl film, the hydroxyl groups of surface hexanol molecules may assist uptake by providing extra sites for HCl and HBr hydrogen bonding and dissociation. In contrast, HCl --> DCl exchange in 60 wt % D(2)SO(4) at first rises with hexyl surface coverage but then drops back to the bare acid value as the hexyl species pack more tightly. HCl entry is actually diminished by the hexyl film on 56 wt % acid, where the film is most compact. These experiments reveal a transition from a porous hexanol film on 68 wt % sulfuric acid that enhances HCl and HBr uptake to one on 56 wt % acid that slightly impedes HCl and D(2)O transport.     

Diversity of lanthanide(iii)-2,5-dihydroxy-1,4-benzenedicarboxylate extended frameworks: syntheses, structures, and magnetic properties

Six lanthanide(iii)-2,5-dihydroxy-1,4-benzenedicarboxylate frameworks, namely, [Ln(H(2)-DHBDC)(1.5)(H(2)O)(2)](n) (Ln = La (1) and Pr (2); H(4)-DHBDC = 2,5-dihydroxy-1,4-benzenedicarboxylic acid), {[Nd(H(2)-DHBDC)(1.5)(H(2)O)(3)](H(2)O)}(n) (3), {[Eu(H(2)-DHBDC)(NO(3))(H(2)O)(4)](H(2)O)(2)}(n) (4), and {[Ln(2)(H(2)-DHBDC)(2)(DHBDC)(0.5)(H(2)O)(3)](H(2)O)(4)}(n) (Ln = Gd (5) and Dy (6)), with four different structural types ranging from 1D chain, 2D layer to 3D networks have been synthesized and structurally characterized. Compounds La (1) and Pr (2) are isomorphous and exhibit 3D frameworks with the unique 1D tubular channels. Compounds Nd (3) and Eu (4) are 2D layer and 1D zigzag chain, respectively, which are further extended to 3D supramolecular frameworks through extensive hydrogen bonds. Isomorphous compounds of Gd (5) and Dy (6) are 3D frameworks constructed from secondary infinite rod-shaped metal-carboxylate/hydroxyl building blocks. While the hydroxyl groups as secondary functional groups in the 1D chain of Eu (4) and 2D layer of Nd (3) are not bonded to the lanthanide centers, the hydroxyl groups in the 3D frameworks of La (1), Pr (2), Gd (5), and Dy (6) participate in coordinating to lanthanide centers and thus modify the structural types of theses compounds. The magnetic data of compounds Pr (2), Nd (3), Gd (5), and Dy (6) have been investigated in detail. In addition, elemental analysis, IR spectra, powder X-ray diffraction (PXRD) patterns and thermogravimetric analysis of these compounds are described.     

Surface-charging behavior of Zn-Cr layered double hydroxide

A Zn-Cr layered double hydroxide (LDH) having the formula Zn(2)Cr(OH)(6)Cl(0.7)(CO(3))(0.15)2.1H(2)O was synthesized and characterized by powder X-ray diffraction, infrared spectroscopy, acid-base potentiometric titration, mass titration, electrophoretic mobility, and modeling of the electrical double layer. Adsorption of alizarin was also performed in order to show some particular features of the HDL. Net hydroxyl adsorption, which increases with increasing pH and decreasing supporting electrolyte concentration, takes place above pH 5. The electrophoretic mobility of the particles was always positive and it decreased when the pH was higher than 9. An isoelectric point of 12 could be estimated by extrapolating the data. The modified MUSIC model was used to estimate deprotonation constants of surface groups and different adsorption models were compared. Good fit of hydroxyl adsorption and electrophoresis could be achieved by considering both OH(-)/Cl(-) exchange at structural sites and proton desorption from surface hydroxyl groups. The modeling, in agreement with alizarin adsorption, indicates that most of the structural positive charge of the LDH is screened at the surface by exchanged anions and negatively charged surface groups. It also suggests that only structural charge sites initially neutralized by chloride ions are active for anion exchange. The remaining sites are blocked by carbonate and do not participate in the exchange.     

Vibrational spectroscopic study of the nitrate containing hydrotalcite mbobomkulite

Raman spectroscopy has been used to study the nitrate hydrotalcite mbobomkulite NiAl2(OH)16(NO3).4H2O. Mbobomkulite along with hydrombobomkulite and sveite are known as 'cave' minerals as these hydrotalcites are only found in caves. Two types of nitrate anion are observed using Raman spectroscopy namely free or non-hydrogen bonded nitrate and nitrate hydrogen bonded to the interlayer water and to the 'brucite-like' hydroxyl surface. Two bands are observed in the Raman spectrum of Ni-mbobomkulite at 3576 and 3647 cm(-1) with an intensity ratio of 3.36/7.37 and are attributed to the Ni3OH and Al3OH stretching vibrations. The observation of multiple water stretching vibrations implies that there are different types of water present in the hydrotalcite structure. Such types of water would result from different hydrogen bond structures.     

A Low-Frequency Infrared Study of the Reaction of Methoxymethylsilanes with Silica

A thin film infrared technique is used to observe bands due to hydrogen-bonded and chemisorbed methoxymethylsilanes on fumed silica in the low-frequency region below 1300 cm(-1). The low-frequency region contains the characteristic bands due to Si-O-Si, Si-O, Si-C, Si-CH(3), and SiO-C modes. Band assignments are aided by ab initio calculations and comparison to thin film experiments of adsorbed chloromethylsilanes. The spectral interpretation was expected to be more complicated than that of the corresponding chlorosilanes because the strong SiO-C alkoxy bands lie in the same region as the Si-O-Si bands. However, the SiO-C bands are weak in intensity when participating in hydrogen-bonding interactions enabling easy detection of the Si-O-Si bands due to chemisorbed species. By combining the low-frequency data with the spectral information for the hydroxyl region, a clearer picture of the nature of the bonding to the surface is obtained. When adsorbed at room temperature, all methoxy groups participate in hydrogen bonding with the surface hydroxyl groups. When the reaction is performed at 150 degrees C, the silanes are chemisorbed via a Si-O-Si bond and the remaining methoxy groups of the chemisorbed species are hydrogen bonded to the surface hydroxyl groups. At reaction temperature of 400 degrees C there is no evidence of hydrogen bonding but the spectra are complicated by the reaction of methanol with the surface. Copyright 2000 Academic Press.     

Interface chemistry and molecular interactions of phosphonic acid self-assembled monolayers on oxyhydroxide-covered aluminum in humid environments

Barrier properties of self-assembled octadecylphosphonic acid (ODPA) monolayers on plasma-modified oxyhydroxide-covered aluminum surfaces were analyzed by means of in situ photoelastic modulated infrared reflection absorption spectroscopy (PM-IRRAS). The surface hydroxyl density prior to ODPA adsorption was increased by means of a low-temperature H(2)O-plasma treatment. Adsorption isotherms of H(2)O on ODPA self-assembled monolayer (SAM) modified surfaces in comparison to bare oxide covered aluminum surfaces showed that the ODPA SAM leads to a strongly reduced amount of adsorbed water based on the inability of water to form hydrogen bonds to the low-energy aliphatic surface. However, the ODPA SAM covered surfaces did not show a significant inhibition of the H(2)O/D(2)O isotope exchange reaction between the D(2)O gas phase and the hydroxyl groups of the aluminum oxyhydroxide film, as the interfacial layer between the ODPA SAM and the metal substrate, while the interfacial phosphonate group as well as the orientation of the SAM is not affected by the adsorption of water. It can be followed that the strong adhesion promoting and high corrosion resistances of organophosphonate monolayers on oxyhydroxide-covered aluminum is a result of the strong acid-base interaction of the phosphonate headgroup with the Al ions in the oxyhydroxide film, even in the presence of high interfacial water activity and the molecular interactions of the aliphatic chains. However, the barrier effect of such monolayers on the transport of water is negligible.