Screening of a combinatorial library of synthetic polyamines displaying selectivity in multiple ion-pairing interactions with model polyanionic compounds in aqueous organic solutions

The biological activity of natural polyamines is due in large part to their ability to form ion-pairing interactions with polyanionic biomolecules, such as proteins, oligonucleotides, and sulfated oligosaccharides. Unfortunately, the diversity of biogenic polyamines is compromised by their limitation to only just a few internitrogen spacers. As a proof-of-principle study, a synthetic split-pool library of linear triamines was screened in an on-bead assay against a selection of model trisulfonated azo dyes (1, 2, and 3) and a short glutamate-rich nonameric peptide (4) to demonstrate its use in the discovery of selective ligands via multivalent ion pairing. From screening a 196-membered split-pool library against the dyes in aqueous organic solutions, with or without spermidine as competing ligand, it was found that the most frequent residues possessed internitrogen distances that were very similar to the sulfonate distances on the dyes. The results from these screening assays were used in the design of two polyamine sequences (8, 8Aoc(R)-8Aoc(R), and 12, 2Acc(R)-epsilonAhx(R)) for follow-up studies in solution phase. These triamines demonstrated the same selectively toward dyes 2 and 3 as observed by the solid-phase approach. In addition, resin-supported triamines, synthesized as discrete compounds, were able to selectively extract either dye 2 or 3 from a mixture of the two, further verifying the observations made from the library screening efforts. With peptide 4, containing three glutamate residues, a preference was found for rather long residues (12 and 8 carbons long), which is suggestive of a linear peptide, rather than a helical motif under the conditions of the screening.     

Four generations of water-soluble dendrimers with 9 to 243 benzoate tethers: synthesis and dendritic effects on their ion pairing with acetylcholine, benzyltriethylammonium, and dopamine in water

Water-soluble benzoate-terminated dendrimers of four generations (from G0 with 9 branches to G3 with 243 branches) were synthesized and fully characterized. They form water-soluble assemblies by ion-pairing interactions with three cations of medicinal interest (acetylcoline, benzyltriethylammonium, and dopamine), which were characterized and investigated by 1H NMR spectroscopy, whereas such interactions do not provoke any significant shift of 1H NMR signals with the monomeric benzoate anion. The calculated association constants confirm that the dendritic carboxylate termini reversibly form ion pairs and aggregates. Diffusion coefficients and hydrodynamic diameters of the dendrimers, as well as changes thereof on interaction with the cations, were evaluated by DOSY experiments. The lack of increase of dendrimer size on addition of the cations and the upfield shifts of the 1H NMR signals of the cation indicate encapsulation within the hydrophobic dendrimer interiors together with probable backfolding of the benzoate termini.     

Synthesis and characterization of water-soluble and photostable L-DOPA dendrimers

A small drug molecule, L-DOPA, was converted into well-defined dendritic macromolecules. Their monodisperse nature was shown by NMR, MALDI-TOF-MS, and PAGE. A third-generation L-Dopa dendrimer contained 30 L-Dopa residues, which made up its core, branches, and periphery. Individual L-Dopa moieties in the dendrimer were connected to one another via hydrolyzable diester linkages. These Dopa dendrimers showed a 20-fold increase in aqueous solubility and enhanced photostability in solutions over L-Dopa under identical conditions.     

Labeled avidin bound to water-soluble nanocrystals by electrostatic interactions

Semiconducting nanocrystals of three different sizes capped with 3-mercaptopropionic acid were synthesized in aqueous solutions. They can efficiently bind to an avidin biomolecule by the electrostatic attraction. The conjugation of avidin leads to a red shift and a decrease in the intensity of the fluorescence emission spectra of the nanocrystals. Moreover, the red shift of the fluorescence spectra of the bioconjugates depends strongly on the pH, ionic strength, quantity of avidin, and nanocrystal size.__________Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2579–2583, December, 2004.     

New insights into the interactions between dendrimers and surfactants by two dimensional NOE NMR spectroscopy

The interactions between polyamidoamine dendrimers and different surfactants including sodium dodecyl sulfate (SDS) and dodecyltrimethyl ammonium bromide in aqueous solutions have been investigated by a NOESY NMR technique. Strong NOE cross-peaks between hydrophobic chain protons of SDS and methylene protons of cationic dendrimers were found, suggesting a strong tendency for the long hydrophobic tails of SDS to associate with the hydrophobic pockets of dendrimers. The hydrophilic head of SDS localizes near the core or the boundary of each generation of dendrimers, and the hydrophobic chain of SDS localizes in the relative nonpolar pockets of dendrimers. The encapsulation of surfactant monomers by dendrimers is dependent on the charge type of the surfactants, the surface functionality, and the generation of dendrimers. The NOESY analysis provides a new insight into interactions between dendrimers and surfactants in comparison with previous investigations.     

Self-assembly of water-soluble dendrimers into thermoreversible hydrogels and macroscopic fibers

Hydrogels and macroscopic fibers are formed through the salt-induced self-assembly of water-soluble polycationic phosphorus dendrimers. Interestingly, the hydrogels are thermoreversible and the sol-gel transition temperature can be easily tuned in a wide range of temperatures (approximately 2-80 degrees C). The effects of different parameters, such as salt nature, dendrimer generation, concentration, and temperature, on dendrimer aggregation are examined. The macroscopic fibers are prepared by flocculation under flow and observed using scanning electron microscopy (SEM) which reveals a microscopic fibrillar substructure. We interpret the gelation and flocculation of the polycationic dendrimers in terms of colloidal flocculation.     

Strong inhibition of cholera toxin binding by galactose dendrimers

Galactose-containing dendrimers with long spacer arms inhibit cholera toxin binding as strongly as the natural ganglioside GM1 oligosaccharide does.     

Supramolecular complex induced by the binding of sodium dodecyl sulfate to PAMAM dendrimers

Isothermal titration calorimetry (ITC) and dynamic light scattering (DLS) were employed to study the spontaneous supramolecular complexation of amine terminated PAMAM dendrimer (G3[EDA] PAMAM-NH2) induced by the binding of an anionic surfactant, sodium dodecyl sulfate (SDS). At pHor=10, the electrostatic binding ceased because the deprotonated PAMAM dendrimer was uncharged, and hence the surfactant-induced supramolecular assembly could not be formed.     

Combined use of physicochemical data and small-molecule crystallographic contact propensities to predict interactions in protein binding sites

Knowledge-based methods are a good alternative to force-field-based methods for the analysis of sites of interaction in protein binding cavities. Both the Protein Data Bank (PDB) and the Cambridge Structural Database (CSD) offer a good amount of data on non-covalent interactions. Although different from protein-derived data, small-molecule crystal data from the CSD are worth looking at as they provide a much more abundant and diverse set of intermolecular contacts. CSD data, when properly corrected by use of octanol-water pi values, can be used to predict the type of ligand chemical group most likely to occupy a given position within a protein binding site. Comparison with observed positions of ligand groups shows that the success rates of these predictions vary from 23% to 84%. Often, the group predicted to be most preferred at a given position is similar but not identical to the observed ligand group; if these are considered successes, prediction success rates range from 71% to 94%. Using PDB data, the corresponding rates are 16% to 79%, and 61% to 96%. Specificity of prediction of NH groups is somewhat better when using PDB interaction data, but results of prediction of hydrophobic groups seem worse than those obtained with CSD data.We have analysed the importance of data selection by applying different filters to eliminate unwanted interactions from our knowledge-base. The presence of certain types of interactions can be undesirable if they are unrepresentative of biological situations (contact to solvent molecules in small-molecule crystal structures, secondary crystallographic contacts) or if they are likely to add noise to the data without conveying much new information (long-distance contacts, sparsely-populated data sets). The elimination of solvent contacts was found to have no effect on the prediction of ligand groups in our test set. Both secondary-contact filtering and noise filtering were found to have a clear beneficial effect on predictive ability.     

Scavenger receptors: diverse activities and promiscuous binding of polyanionic ligands

Scavenger receptors are a diverse family of proteins that share a common property - the binding of modified lipoprotein - but they have recently been shown to recognise a diverse range of ligands. Understanding the molecular interaction of receptor-ligand binding should provide insight into how scavenger receptors contribute to important biological processes.     

Unsurpassed cage effect for the photolysis of dibenzyl ketones in water-soluble dendrimers

Amphiphilic water-soluble poly(alkyl aryl ether) dendrimers Gn (n = 1-3) with charge-neutral tetraethylene glycol monomethyl ethers at their periphery were synthesized as microreactors to control the photochemical reactions of dibenzyl ketone derivatives in aqueous solutions. Photophysical studies demonstrated that Gn can encapsulate organic molecules and provide a hydrophobic microenvironment. The product distribution of photolysis of dibenzyl ketone derivatives can be successfully controlled by encapsulating the substrates within dendrimers, and an unsurpassed cage effect of 1.00 is reached in high generation dendrimers, revealing that a thick and compact "shell" was formed at the periphery of the dendrimers. The cage effect is also significantly influenced by the substituent at the para-position of the guest molecules. The higher generation dendrimers exhibit a better confined microenvironment and the aggregates possess more compact cavities to "lock" the guests than the corresponding unimolecular dendrimers. After photolysis, the separation of products can be easily achieved by extracting from the dendrimer solutions and the dendrimers are simply recovered and reused.     

New dendrimers containing a single cobaltocenium unit covalently attached to the apical position of Newkome dendrons: electrochemistry and guest binding interactions with cucurbit[7]uril

Two new dendrimer series were prepared and characterized. These dendrimers contain a single bis(cyclopentadienyl)cobalt(III) (cobaltocenium, Cob+) unit covalently attached to the apical (focal) position of Newkome-type dendrons, ranging in size from first to third generation. The dendrimers in the first series (1ECob+-3ECob+) are hydrophobic and have 3, 9, and 27 tert-butyl esters on their peripheries, whereas the dendrimers in the second series (1Cob+-3Cob+) are hydrophilic with 3, 9, and 27 carboxylic acid groups on their surfaces, respectively. In voltammetric experiments, all dendrimers showed the expected one-electron reversible reduction of the cobaltocenium center, and the heterogeneous rate of electron transfer decreased with generation in both dendrimer series. The host-guest binding interactions between water-soluble dendrimers 1Cob+-3Cob+ and the cucurbit[7]uril (CB7) host were investigated using 1H NMR spectroscopy, MALDI-TOF mass spectrometry, and electrochemical techniques. The association equilibrium constants (K) for all dendrimer guests were significantly lower than that measured for the inclusion complex between underivatized Cob+ and CB7 (K = 5.7 x 10(9) M(-1)). Nonetheless, among the three dendrimers surveyed, the second-generation dendrimer, 2Cob+, afforded optimum stabilization for the CB7 inclusion complex.     

Investigation of silver binding to polyamidoamine (PAMAM) dendrimers by ESI tandem mass spectrometry

Electrospray ionization tandem mass spectrometry (ESI-MS/MS) was used to probe the binding of silver ions and reduced silver species with polyamidoamine generation 1 amine-terminated (PAMAMG1NH2) and generation 2 hydroxyl-terminated (PAMAMG2OH) dendrimers. At Ag(+)/PAMAMG2OH molar ratios of 1, 2:1 and low abundance 3:1 complexes emerge. Similar results were observed for PAMAMG1NH2. The collisional activated dissociation (CAD) patterns of the dendrimer ions are characterized by losses of amidoamine branches resulting largely from hydrogen migration and cleavage reactions. Ag+/dendrimer complexes are characterized by the loss of a dendrimer branch from the complex, with the silver ion remaining bound to a dendrimer fragment. When the Ag+-bound dendrimer complexes are reduced by hydrazine, low abundance complexes, whose m/z values are consistent with ones containing zerovalent silver species, are observed in the mass spectra. Complexes with three silver atoms are observed in the spectrum containing PAMAMG1NH2, and complexes with four and five silver atoms are observed with PAMAMG2OH. The CAD fragmentation patterns of the complexes formed after the silver reduction are different than those observed for complexes containing one silver ion and are characterized by the ejection of all silver species, possibly as a cluster, leaving the intact dendrimer ion. Experiments with Cu+, Cu2+, and Pt2+ binding to PAMAMG2OH were also done, but reduced metal clusters were not observed in the mass spectra after the addition of hydrazine.     

Altering the strength of lectin binding interactions and controlling the amount of lectin clustering using mannose/hydroxyl-functionalized dendrimers

Protein-carbohydrate interactions play a critical role in many biological recognition events. Multivalent therapeutic agents that utilize protein-carbohydrate interactions have proven difficult to design, primarily because the fundamental requirements of protein-carbohydrate interactions are not well understood. Here, we report a systematic study of the effect on lectin binding of varying the loading of mannose surface residues on generations three through six PAMAM dendrimers. The degree of mannose functionalization was controlled by stoichiometric addition, and dendrimers were characterized using NMR and MALDI-TOF MS. Hemagglutination assays and quantitative precipitation assays were performed to determine the relative activity of the dendrimers. Using the mannose/hydroxyl-functionalized dendrimers reported here, we could systematically control both the degree of lectin clustering and the overall activity of the lectin with the dendrimer.     

Volumetric studies to examine the interactions of imidazolium based ionic liquids with water by means of density and speed of sound measurements

Densities and speeds of sound for aqueous solutions of ionic liquids having 1-butyl-3-methylimidazolium as cation and chloride, bromide, iodide, acetate, tetrafluoroborate, and trifluoromethanesulfonate as anions were accurately measured at various concentrations and temperatures. The data were used in evaluating thermodynamic properties as apparent molar volumes and apparent molar isentropic compressions. Infinite dilution values of these properties were determined using appropriate extrapolation procedures utilizing Debye–Hückel limiting law for electrolyte solutions. Apparent molar isobaric expansions at infinite dilutions were also evaluated from the temperature dependence of apparent molar volumes. The results were interpreted in terms of ionic liquid–water interactions.     

Mannose/glucose-functionalized dendrimers to investigate the predictable tunability of multivalent interactions

G4-, G5-, and G6-PAMAM dendrimers were functionalized with mixtures of mannose and glucose in varying ratios, and the relative affinities of these compounds for Concanavalin A (Con A) were evaluated using the hemagglutination assay. As the ratio of mannose to glucose increases, the relative activity in the hemagglutination assay (on a per sugar basis) increases linearly. Methyl mannose binds to Con A with an affinity 4-fold higher than that of methyl glucose; multivalency amplifies this trend. The mannose/glucose-functionalized dendrimer results reported here suggest that the affinity of multivalent associations can be attenuated in predictable, reliable ways based on monovalent affinities of the ligands.     

Fermentability of water-soluble portion to ethanol obtained by supercritical water treatment of lignocellulosics

The water-soluble (WS) portion obtained by supercritical water treatment of lignocellulosics was studied for its fermentability to ethanol. A fermentation test of the WS portion showed it was not fermented to ethanol. Therefore, a wood characoal treatment was applied to the WS portion to remove furan and phenolic compounds, which are thought to be the inhibitors to sugar fermentability. It was found that treatment with wood charcoal can be effective at removing these inhibitors and improving the fermentability of the WS portion without reducing the levels of fermentable sugars.     

Activation of CdS nanoparticles by metallic ions and their selective interactions with PAMAM dendrimers

CdS nanoparticles (NPs) in colloidal dispersion were activated by metallic ions [Mn(II) and Cu(II)], employing a simple method under mild conditions. These metallic ions on the surface of the CdS NPs quench the red-shifted defect emission, and efficiently promote near band gap emission; they also enhance the photo stability and dispersability of the suspensions. Taking advantage of the chemical affinity of Mn(II) and Cu(II) for the CdS surface, we carried out a study of the interaction between [CdS-M(II) _n ] NPs and polyamidoamine dendrimers of 1 and 2.5 generations (G₁=8 amino, and G_2.5=32 carboxylic end-groups, respectively). The strong interaction between these two chemical species results in the formation of new [CdS-M(II) _n G _n ] nanocomposites. All colloidal systems were monitored by UV-visible electronic absorption and emission spectroscopies, and electronic paramagnetic resonance. The crystal structures of the nanocomposites, as well as their average diameters (2.0–3.3 nm), were determined by high-resolution transmission electron microscopy images.     

Electrochemical surface plasmon resonance investigation of dodecyl sulfate adsorption to electroactive self-assembled monolayers via ion-pairing interactions

The redox-induced assembly of amphiphilic molecules and macromolecules at electrode surfaces is a potentially attractive means of electrochemically modulating the organization of materials and nanostructures on solid substrates via ion-pairing interactions or charge-transfer complexation. In this regard, we have investigated the potential-induced adsorption and aggregation of dodecyl sulfate, a common anionic surfactant, at a ferrocenylundecanethiolate (FcC11SAu) self-assembled monolayer (SAM)/aqueous solution interface by electrochemical surface plasmon resonance (ESPR) spectroscopy. The surfactant anions adsorb onto the electroactive SAM by specific ion-pairing interactions with the oxidized ferricinium species. The ferricinium charge density (QFc+) obtained by cyclic voltammetry and surface coverage measured by SPR indicate that the dodecyl sulfate forms an interdigitated monolayer, where half of the surfactant molecules have their sulfate headgroups paired to the surface and half have their headgroups exposed to the aqueous solution. The surface coverage of dodecyl sulfate was found to depend on both the ferricinium surface concentration and the surfactant aggregation state in solution. A maximum coverage of dodecyl sulfate on the ferricinium surface is obtained below the critical micelle concentration (cmc), in contrast to dodecyl sulfate adsorption to SAM surfaces of static positive charge. This marked difference in adsorption behavior is attributed to the dynamic generation of ferricinium by potential cycling and the specific nature of the ion-pairing interactions versus pure electrostatic ones. The results presented point to a new way of organizing molecules via electrical stimulus.