N‐Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent

N‐glycosylation is a fundamental modification of proteins and exists in the three domains of life and in some viruses, including the chloroviruses, for which a new type of core N‐glycan is herein described. This N‐glycan core structure, common to all chloroviruses, is a pentasaccharide with a β‐glucose linked to an asparagine residue which is not located in the typical sequon N‐X‐T/S. The glucose is linked to a terminal xylose unit and a hyperbranched fucose, which is in turn substituted with a terminal galactose and a second xylose residue. The third position of the fucose unit is always linked to a rhamnose, which is a semiconserved element because its absolute configuration is virus‐dependent. Additional decorations occur on this core N‐glycan and represent a molecular signature for each chlorovirus.     

Experimental study of dielectrophoresis and liquid dielectrophoresis mechanisms for particle capture in a droplet

This work presents a microfluidic system that can transport, concentrate, and capture particles in a controllable droplet. Dielectrophoresis (DEP), a phenomenon in which a force is exerted on a dielectric particle when it is subjected to a non-uniform electric field, is used to manipulate particles. Liquid dielectrophoresis (LDEP), a phenomenon in which a liquid moves toward regions of high electric field strength under a non-uniform electric field, is used to manipulate the fluid. In this study, a mechanism of droplet creation presented in a previous work that uses DEP and LDEP is improved. A driving electrode with a DEP gap is used to prevent beads from getting stuck at the interface between air and liquid, which is actuated with an AC signal of 200 V(pp) at a frequency of 100 kHz. DEP theory is used to calculate the DEP force in the liquid, and LDEP theory is used to analyze the influence of the DEP gap. The increment of the actuation voltage due to the electrode with a DEP gap is calculated. A set of microwell electrodes is used to capture a bead using DEP force, which is actuated with an AC signal of 20 V(pp) at a frequency of 5 MHz. A simulation is carried out to investigate the dimensions of the DEP gap and microwell electrodes. Experiments are performed to demonstrate the creation of a 100-nL droplet and the capture of individual 10-μm polystyrene latex beads in the droplet.     

Electrophoresis of a rigid sphere in a Carreau fluid normal to a large charged disk

The electrophoresis of a rigid sphere in a Carreau fluid normal to a large disk is analyzed theoretically under the conditions of low surface potential and weak applied electric field. Previous analyses are extended to the case where a disk can be charged, and a more realistic electrostatic force formula is applied. We show that the qualitative behavior of a sphere depends largely on its distance from a disk, the thickness of double layer, and the nature of a fluid. In general, the presence of a disk has the effect of increasing the conventional hydrodynamic drag on a sphere, and a decrease in the thickness of the double layer surrounding a sphere has the effect of enhancing the shear-thinning effect. However, this might not be the case if a sphere is uncharged and a disk is charged, where the osmotic pressure field and the induced charge on the sphere surface can be significant. The shear-thinning effect is important only if the thickness of double layer is sufficiently thick. This result can play a significant role in practice such as in electrophoretic deposition, where the deposition electrode is charged and the fluid medium is usually of shearing-thinning nature.     

Modeling of the pseudo-colloids migration for multi-member decay chains with a arbitrary flux boundary condition in a fractured porous medium

A deep geologic disposal is the prime option for the long-term isolation of high-level radioactive waste (HLW) in many countries. For deeply located repositories, a radionuclide released from a failed waste container moves through the engineered and natural barriers before it reaches a biosphere. The pseudo-colloid which a radionuclide is adsorbed on a moving natural humic or fulvic colloid can be generated in a fractured porous medium. The size of a colloid is in general in the order of a hundred nanometer so that its migration velocity in a fracture is higher than that of a radionuclide due to the hydrochromatic effect. A large colloid cannot diffuse easily into a surrounding rock. Also, there are many kinds of actinides and these actinides have decay chains. In this analysis, the canonical form solution is derived for a pseudo-colloid and a solute in a fracture and a surrounding rock with a realistic inlet boundary condition with multi-member decay chains. It is used the Fortran based a computational code which uses a special subroutine for the inversion of Laplace transform. Consequently, the role of the pseudo-colloid in the fractured porous medium is important and also their decay chains aren’t neglected in the performance assessment of the HLW.     

Time correlation functions and chemical reaction rates

The relation between time-dependent density correlation functions and chemical reaction rates is investigated. The case of a simple two-atom reaction in a fluid system is studied in detail. It is found that the reaction is obtainable from a three-density correlation function, taken in the long-time, long-wavelength limit. This result is analogous to the well known relation between the diffusion rate and the two-density correlation in a fluid. The present calculation is valid in an arbitrary fluid system, and is applicable in particular to reactions in a catalytic medium.     

Effect of a charged boundary on electrophoresis in a Carreau fluid: a sphere at an arbitrary position in a spherical cavity

The influence of a charged boundary on the electrophoretic behavior of an entity in a non-Newtonian fluid is studied by considering a sphere at an arbitrary position in a spherical cavity filled with a Carreau fluid under the conditions of low surface potential and weak applied electric field. The dependence of the mobility of a sphere on its position in a cavity, the size of a cavity, the thickness of a double layer, and the nature of a fluid is investigated. In addition to the fact that the effect of shear-thinning is advantageous to the movement of a sphere, several other interesting results are also observed. For instance, if an uncharged sphere is in a positively charged cavity, where the electroosmotic flow and the induced charge on the sphere surface play a role, the effect of shear-thinning is important only if the thickness of the double layer is either sufficiently thin or sufficiently thick. However, this might not be the case if a positively charged sphere is in an uncharged cavity.     

PP2A in the regulation of cell motility and invasion

Cell motility is a very critical phenomenon that plays an important role in the development of eukaryotic organisms. One of the well studied cell motility phenomena is chemotaxis, which is described as a directional movement of cell in response to changes in external chemotactic gradient. Numerous studies conducted both in unicellular organism and in mammalian cells have demonstrated the importance of phosphatidylionositol-3 kinase (PI3K) in this process. In addition, it is now well established that although PI3K plays an activation role in chemotaxis, the role of phosphatases is also critical to maintain this dynamic cyclical process. Protein phosphatase 2A (PP2A) is a major serine/threonine phosphatase that is a key player in regulating PI3K signaling. PP2A is abundantly and ubiquitously expressed and has been highly conserved during the evolution of eukaryotes. PP2A is composed of three protein subunits, A, B, and C. Subunit 'A' is a 60-65 kDa structural component, 'C' is a 36-38 kDa catalytic subunit, and 'B' is a 54-130 kDa regulatory subunit. The core complex of PP2A is comprised of the A and C subunits, which are tightly associated and this dimeric core complexes with the regulatory B subunit. The B subunit determines the substrate specificity as well as the spatial and temporal functions of PP2A. PP2A plays an important role in regulating multiple signal transduction pathways, including cell-cycle regulation, cell-growth and development, cytoskeleton dynamics, and cell motility. This review focuses on the role of PP2A in regulating motility of normal and transformed cells.     

Truncated versus extended microfilms at a vapor-liquid contact line on a heated substrate

The microstructure of a contact line formed by a liquid and its pure vapor on a perfectly wetted superheated smooth substrate, with the disjoining pressure most often in the form of a positive inverse cubic law (nonpolar case), is routinely considered to end up in a microfilm extended over adjacent "dry" parts of the solid surface. Invoking the spreading coefficient as an additional independent parameter within this framework, we argue however that a regime with a truncated microfilm is chosen instead if the spreading coefficient is decreased below a positive (still perfect wetting) critical value dependent upon the superheat, in which case the extended-microfilm thickness is surpassed by that of the "pancake" introduced by de Gennes and co-workers. Conversely, for a given positive spreading coefficient, there is a critical superheat above which the microfilm gets truncated, whereas for a negative one (partial wetting) the truncated regime should be preferred at any superheat. A parametric study of the apparent contact angle (a nonlinear eigenvalue of the steady microstructure problem) versus the spreading coefficient is carried out. When the latter is negative, Young's law is asymptotically recovered. Microfilm fronts on a bare surface are shown to be advancing or receding in accordance with the selected regime. A slightly more general class of disjoining pressures is also touched upon. The analysis is based in part upon thermodynamic considerations and in part upon a standard one-sided model of an evaporating liquid layer in the lubrication approximation.     

Rheological properties and the mechanism of a viscous flow of aqueous pectin solutions

The rheological properties and mechanisms of a viscous flow of diluted apple pectin solutions are investigated. It is found that the rise in solution viscosity upon an increase in concentration and a drop in temperature is, along with the corresponding degree to which the interaction between pectin molecules and solvent is reduced, associated with the processes of structuring. The entropy of a viscous flow of pectin solutions is found to be positive: it grows with a rise in concentration is virtually temperature independent. It is established that the entropy factor makes the main contribution to the free energy value of a viscous flow.     

Influence of the convective term in the Nernst-Planck equation on properties of ion transport through a layer of solution or membrane

The one-dimensional boundary-value problem of steady-state ion transport, which takes into account the convective component, is formulated and solved in terms of the Nernst-Planck model. This problem is investigated in connection with the diffusion layer, which is understood in a broad sense. This can be the diffusion layer as it is usually understood, i.e., located adjacent to a hydraulically permeable membrane. In another context it can be regarded as a capillary connecting two reservoirs filled with solutions of different concentration or as an uncharged macropore permeating the membrane and separating two solutions. Finally, the solution to the problem is applied to the membrane itself, which is represented as a quasi-homogeneous gel. In the latter case, a virtual electroneutral solution in local equilibrium with a small volume of membrane is considered. The problem is investigated in dimensionless form as a function of the Peclet number. It is shown that the Peclet number is numerically equal to the absolute value of the dimensionless convection velocity. The limiting current, concentration profiles, distributions of the field strength and potential, and effective transport numbers are analyzed as functions of the convective component.     

Review of non-reactive and reactive wetting of liquids on surfaces

Wettability is a tendency for a liquid to spread on a solid substrate and is generally measured in terms of the angle (contact angle) between the tangent drawn at the triple point between the three phases (solid, liquid and vapour) and the substrate surface. A liquid spreading on a substrate with no reaction/absorption of the liquid by substrate material is known as non-reactive or inert wetting whereas the wetting process influenced by reaction between the spreading liquid and substrate material is known as reactive wetting. Young's equation gives the equilibrium contact angle in terms of interfacial tensions existing at the three-phase interface. The derivation of Young's equation is made under the assumptions of spreading of non-reactive liquid on an ideal (physically and chemically inert, smooth, homogeneous and rigid) solid, a condition that is rarely met in practical situations. Nevertheless Young's equation is the most fundamental starting point for understanding of the complex field of wetting. Reliable and reproducible measurements of contact angle from the experiments are important in order to analyze the wetting behaviour. Various methods have been developed over the years to evaluate wettability of a solid by a liquid. Among these, sessile drop and wetting balance techniques are versatile, popular and provide reliable data. Wetting is affected by large number of factors including liquid properties, substrate properties and system conditions. The effect of these factors on wettability is discussed. Thermodynamic treatment of wetting in inert systems is simple and based on free energy minimization where as that in reactive systems is quite complex. Surface energetics has to be considered while determining the driving force for spreading. Similar is the case of spreading kinetics. Inert systems follow definite flow pattern and in most cases a single function is sufficient to describe the whole kinetics. Theoretical models successfully describe the spreading in inert systems. However, it is difficult to determine the exact mechanism that controls the kinetics since reactive wetting is affected by a number of factors like interfacial reactions, diffusion of constituents, dissolution of the substrate, etc. The quantification of the effect of these interrelated factors on wettability would be useful to build a predictive model of wetting kinetics for reactive systems.     

Batch process monitoring using on-line MIR spectroscopy

Many high quality products are produced in a batch wise manner. One of the characteristics of a batch process is the recipe driven nature. By repeating the recipe in an identical manner a desired end-product is obtained. However, in spite of repeating the recipe in an identical manner, process differences occur. These differences can be caused by a change of feed stock supplier or impurities in the process. Because of this, differences might occur in the end-product quality or unsafe process situations arise. Therefore, the need to monitor an industrial batch process exists. An industrial process is usually monitored by process measurements such as pressures and temperatures. Nowadays, due to technical developments, spectroscopy is more and more used for process monitoring. Spectroscopic measurements have the advantage of giving a direct chemical insight in the process. Multivariate statistical process control (MSPC) is a statistical way of monitoring the behaviour of a process. Combining spectroscopic measurements with MSPC will notice process perturbations or process deviations from normal operating conditions in a very simple manner. In the following an application is given of batch process monitoring. It is shown how a calibration model is developed and used with the principles of MSPC. Statistical control charts are developed and used to detect batches with a process upset.     

Rules for stating when a limiting value is exceeded

The paper describes rules for stating whether a measurement result indicates that the value of the measurand, e.g. the concentration of a substance in the blood, is in conformity or not in conformity with given specifications. Examples of the intended applications are control of doping in sports, alcohol level in drivers’ blood, trace metals levels in workers’ blood, the proportion of gold in alloys, certain ingredients in food products and pesticides in drinking water. When limiting value(s) have been established a permissible measurand value is said to be in conformity and a non-permissible value it is said to be in non-conformity. One of the following three statements is asserted: Statement A: The value of the measurand is beyond any reasonable doubt in conformity, Statement B: The value of the measurand is beyond any reasonable doubt in non-conformity, Statement C: Neither conformity nor non-conformity could be demonstrated. The test can be performed as either a one-stage or a two-stage procedure. A two-stage procedure is recommended as especially appropriate when a cheap and fast screening method can be used in the first stage. For normally distributed measurements, a freeware computer program, conform1e.exe, is available for the calculations of the probabilities for Statements A, B and C.     

Structure and photoreaction of photoactive yellow protein, a structural prototype of the PAS domain superfamily

Photoactive yellow protein (PYP) is a water-soluble photosensor protein found in purple photosynthetic bacteria. Unlike bacterial rhodopsins, photosensor proteins composed of seven transmembrane helices and a retinal chromophore in halophilic archaebacteria, PYP is a highly soluble globular protein. The alpha/beta fold structure of PYP is a structural prototype of the PAS domain superfamily, many members of which function as sensors for various kinds of stimuli. To absorb a photon in the visible region, PYP has a p-coumaric acid chromophore binding to the cysteine residue via a thioester bond. It exists in a deprotonated trans form in the dark. The primary photochemical event is photo-isomerization of the chromophore from trans to cis form. The twisted cis chromophore in early intermediates is relaxed and finally protonated. Consequently, the chromophore becomes electrostatically neutral and rearrangement of the hydrogen-bonding network triggers overall structural change of the protein moiety, in which local conformational change around the chromophore is propagated to the N-terminal region. Thus, it is an ideal model for protein conformational changes that result in functional change, responding to stimuli and expressing physiological activity. In this paper, recent progress in investigation of the photoresponse of PYP is reviewed.     

Structure and stability of Co(n)(pyridine)(m)- clusters: absence of metal inserted structures

A synergistic approach combining the experimental photoelectron spectroscopy and theoretical electronic structure studies is used to probe the geometrical structure and the spin magnetic moment of Co(n)(pyridine)(m) (-) clusters. It is predicted that the ground state of Co(pyridine)(-) is a structure where the Co atom is inserted in a CH bond. However, the insertion is marked by a barrier of 0.33 eV that is not overcome under the existing experimental conditions resulting in the formation of a structure where Co occupies a site above the pyridine plane. For Co(2)(pyridine)(-), a ground-state structure is predicted in which the Co(2) diametric moiety is inserted in one of the CH bonds, but again because of a barrier, the structure which matches the photoelectron spectrum is a higher-energy isomer in which the Co(2) moiety is bonded directly to nitrogen on the pyridine ring. In all cases, the Co sites have finite magnetic moments suggesting that the complexes may provide ways of making cluster-based magnetic materials.     

Numerical simulation of nanoparticle melting inside a matrix

A theoretical model is proposed for describing the melting of a metal nanoparticle embedded into a solid matrix. The model is based on a thermodynamic approach that takes into account matrix elasticity. The melting process is described for gold nanoparticles embedded in a solid matrix whose elastic modulus is varied in a wide range. Both spherical and ellipsoidal particles are considered. It is shown that particle melting temperature can be both higher and lower than the melting point of a bulk sample depending on the interaction intensity of the solid and liquid particle surfaces with the matrix. An increase in the shear modulus of the matrix causes a rise in the nanoparticle melting temperature, with the effect of the matrix elasticity becoming noticeable at some critical shear modulus. The conditions are revealed at which only a surface layer of a nanoparticle, the thickness of which depends on the particle radius and temperature, is melted.     

哒螨灵在苹果和土壤上残留以及降解行为研究

本研究建立了基于高效液相色谱为基础的哒螨灵分析方法,并对哒螨灵在安徽淮北和陕西咸阳两地苹果上的消解和残留行为进行了研究,同时还考察了哒螨灵在两地土壤中的降解和残留行为．哒螨灵在苹果中的消解动态方程：陕西咸阳为C=0．4007e^-0.1535t,半衰期T1/2=4．5天;安徽淮北=0．1096e^-0.1464t,半衰期T1/2=4．7天;在土壤中的消解动态方程：陕西咸阳为C=0．7978e^0.1218t,半衰期T1/2=5．7天;安徽淮北C=1．4024e^-0.0912t,半衰期T1/2=7．6天．在推荐使用高剂量和推荐高剂量1．5倍情况下,施药1-2次,末次药后7天,哒螨灵在苹果中的残留为0．02～0．14mg／kg;药后14天为0．01—0．12mg／kg．试验结果表明,药后7天,苹果中哒螨灵的残留量低于2mg／kg,用药次数1-2次,每次间隔7天的情况下,在苹果上的安全间隔期可定为7天．     

Droplet formation in a thin layer of a two-component solution under the thermal action of laser radiation

Droplet growth in thin layers of water-alcohol solutions under the effect of a concentration-induced capillary flow, which is governed by a laser electromagnetic radiation, is investigated. It is established that an increase in water concentration in a solution accelerates the droplet growth. In low-concentrated solutions, a droplet may reach a quasi-steady state, in which its diameter is no larger than the diameter of the light beam projection onto the layer. A rise in the radiation power above an optimal magnitude decelerates the droplet growth. In low-concentrated solutions, this deceleration results from a decrease in the flow that feeds the droplet, while in high-concentrated solutions, it is due to a droplet constriction and an increase in its curvature radius.     

The balance in the museum

The balance is the oldest real measuring instrument. It is still a widely used instrument in science, industry, commerce and in the household. It has found significance as a symbol in religion, justice, commerce and as an esoteric object. As a balance is always an interesting object it is exhibited in many museums and there exist a lot specialised scales-and-weight museums. We attempt to give a survey of these.     

Autocatalyses

Autocatalysis is a fundamental concept, used in a wide range of domains. From the most general definition of autocatalysis, that is, a process in which a chemical compound is able to catalyze its own formation, several different systems can be described. We detail the different categories of autocatalyses and compare them on the basis of their mechanistic, kinetic, and dynamic properties. It is shown how autocatalytic patterns can be generated by different systems of chemical reactions. With the notion of autocatalysis covering a large variety of mechanistic realizations with very similar behaviors, it is proposed that the key signature of autocatalysis is its kinetic pattern expressed in a mathematical form.