Synergetic effect of ultrasound and sodium dodecyl sulphate in the formation of CdS nanostructures in aqueous solution

High aspect ratio (>1000) CdS nanostructures were prepared via ultrasound treatment of parent nanowires (NWs) dispersed in sodium dodecyl sulfate (SDS) aqueous solution. The CdS parent NWs were prepared using ordered mesoporous silica, SBA-15, as a template. The elongated nanostructures (ENS), namely, NWs, nanoribbons and nanotubes, form stable dispersions in aqueous solutions. Electron microscopy and X-ray diffraction techniques were used to characterize both the parent NWs and the ENS. While the structure of the parent NWs is crystalline cubic, the ENS are amorphous. We show that the amorphous ENS bud from the parent bundled NWs. Ultrasound power and duration, presence of commensurate surfactant and calcination temperature of the templating SBA-15 are critical parameters in the formation of ENS in aqueous solution.     

Kinetic investigation on carbamate formation from the reaction of carbon dioxide with amino acids in homogeneous aqueous solution

The kinetics of carbamate formation from the reaction of carbon dioxide with α‐amino acids in D₂O was first investigated by means of nuclear magnetic resonance spectroscopy. Potassium carbonate was used as the CO₂ source. For each amino acid, the maximum carbamate yield, the apparent rate constant for the carbamate formation k_app, and the rate constants for the formation k₁ and the breakdown k_?1 of the carbamate were estimated. Plots of log k₁ or log k_?1 versus pK_a of amino acids indicated that the formation rate k₁ increased with the basicity (pK_a) of amino acid, while the decomposition rate k_?1 decreased. A Br?nsted β value of 0.39 was obtained from the former plot, being in good agreement with the previously reported ones (0.26–0.43). The observed negative pK_a dependence of log k_?1 (Br?nsted α = 0.34) is reasonable, because the carbamate decomposition is acid‐catalyzed and the steady‐state concentration of H⁺ should be higher for weaker basic amines. The charge (σ) and the lone‐pair energy (E_N) at the nitrogen atom of the amino group were calculated. Although log k₁ correlated with σ and E_N, log k_?1 was unrelated with both of these parameters. Considering that the carbamate formation (k₁) is not only base‐catalyzed but should also be promoted by the nucleophilicity of the amino nitrogen, its correlation with σ and E_N in addition to pK_a is rational. The irrelevance of log k_?1 to σ and E_N is not surprising, because σ and E_N are not a direct measure of [H⁺] of the solution. Copyright © 2011 John Wiley & Sons, Ltd.     

Luminescent spectral characteristics of eosin in solutions of human serum albumin when denatured by treatment with sodium dodecyl sulfate

From analysis of the fluorescence spectra of eosin molecules in a solution with human serum albumin (HSA), we have obtained information about the dynamics of protein conformational rearrangements during denaturing of the protein when treated with sodium dodecyl sulfate (SDS) for different pH values of the solution. We hypothesize that HSA denaturing in the presence of SDS occurs in two stages: the first stage is loosening of the protein globules, and the second stage is complete unfolding of the protein molecules. We have shown that denaturating of the protein in the presence of SDS passes through both stages for a solution pH below the isoelectric point of the albumin, while the denaturing stops in the first stage for a solution pH above the isoelectric point of the albumin. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 5, pp. 661–665, September–October, 2006.     

Small angle neutron scattering studies of mixed micelles of sodium cumene sulphonate with cetyl trimethylammonium bromide and sodium dodecyl sulphate

The aqueous solutions of sodium cumene sulphonate (NaCS) and its mixtures with each of cetyl trimethylammonium bromide (CTAB) and sodium dodecyl sulphate (SDS) are characterized by small angle neutron scattering (SANS). NaCS when added to CTAB solution leads to the formation of long rod-shaped micelles with a dramatic increase in the CTAB aggregation number. Its addition to SDS on the other hand results in the formation of smaller mixed micelles where part of SDS molecules in the micelle is replaced by NaCS molecules.      

A thermodynamic and photophysical study of the effects of thiourea on the micellar properties of aqueous sodium dodecyl sulphate solution

The micellar properties of sodium dodecyl sulphate (SDS) in aqueous thiourea solutions were investigated with the aim of studying the effect of thiourea on these properties. The critical micelle concentrations (cmc) and the degree of dissociation of the micelle were determined by the conductometric method over the temperature range 298–323 K for different concentrations of thiourea. The cmc values of the surfactant in the presence of thiourea were obtained by following the change in the relative intensities of vibrational fine structure of the pyrene fluorescence spectra. The aggregation numbers were determined by employing the static quenching fluorescence method. The cmc values in the presence of varying electrolyte concentrations (NaCl) were obtained with 8-anilinonaphthalene 1-sulphonate (ANS) as a fluorescence probe, and from these values the degree of dissociation was calculated. The mass action model was applied in the present study to obtain various thermodynamic parameters of micellization. All these properties were compared with the micellar properties of an aqueous urea/SDS system, and it was found that thiourea is a better demicellization agent.     

Small-angle neutron scattering studies of sodium butyl benzene sulfonate aggregates in aqueous solution

The aggregation behaviour of a hydrotrope, sodiumn-butyl benzene sulfonate (Na-NBBS), in aqueous solutions is investigated by small-angle neutron scattering (SANS). Nearly ellipsoidal aggregates of Na-NBBS at concentrations well above its minimum hydrotrope concentration were detected by SANS. The hydrotrope seems to form self-assemblies with aggregation number of 36–40 with a substantial charge on the aggregate. This aggregation number is weakly affected by the hydrotrope concentration.     

Solvation thermodynamics of xylitol in water and in aqueous amino acids at 298.15 K

The scaled particle theory has been applied to calculate the free energy, ΔG_solv, enthalpy, ΔH_solv, and entropy, ΔS_solv of solvation for xylitol in water and in aqueous amino acids (glycine, alanine and valine) at 298.15 K. The solvation energy, enthalpy and entropy of xylitol are expressed in terms of their various ingredients. The results show that the interaction terms contribute favorably to the process of solvation. The results suggest that the cavity formation for accommodation of xylitol molecules in aqueous amino acids is an enthalpy‐dominated process. Furthermore, the investigated parameters indicate that xylitol–amino acid interactions follow the sequence: glycine alanine valine water. The findings of the present work may help to throw light on the role that xylitol can play to stabilize macromolecules like proteins in aqueous solutions. Copyright © 2012 John Wiley & Sons, Ltd.     

Determination of albumins by its quenching effect on the fluorescence of Tb-oxolinic acid complex in presence of sodium dodecyl sulphate

It is found that the fluorescence intensity of Tb³⁺-oxolinic acid (OA) complex can be greatly quenched by albumins in sodium dodecyl sulphate (SLS). Under optimum conditions, the quenched fluorescence intensity is in proportion to the concentration of proteins in the range of 5.0×10⁻⁸-1.0×10⁻⁵ g ml⁻¹ for bovine serum albumin (BSA), 1.0×10⁻⁷-1.0×10⁻⁵ g ml⁻¹ for human serum albumin (HSA) and 4.0×10⁻⁷-1.0×10⁻⁵ g ml⁻¹ for egg albumin (EA). Their detection limits (S/N=3) are 2.1×10⁻⁸, 2.5×10⁻⁸ and 5.0×10⁻⁸ g ml⁻¹, respectively. In addition, the interaction mechanism is also investigated.     

Relative facility of the desulfurization of amino acids and their carboxylic derivatives

As an excellent alternative to native chemical ligations, the ligation–desulfurization strategy enables the ligations on the other N‐terminal peptides (in addition to Cys) and is highly promising in peptide synthesis. In the present study, the relative facility of the desulfurization on the pre‐sulfurized amino acids and their carboxylate derivatives has been examined with the aid of density functional theory calculations. It is found that the C–SH bond strengths of the sulfurized amino acids directly relate to the stability of the formed radical. By contrast, the carboxylation of the sulfurized amino acids greatly stabilizes the carbonyl radical center, and both the steric and electronic effects are important factors in determining the C–SH bond strength of the carboxylate precursors. Copyright © 2015 John Wiley & Sons, Ltd.     

Fluorescence studies on the conformation of litorin in solution and in the presence of model membranes

The conformation of the nonapeptide hormone litorin has been studied in buffer and in the presence of lipids, using static and dynamic fluorescence. The results obtained show that, in buffer, the hormone probably exists in a collection of flexible conformers, slowly interconverting between them. The marked changes observed in fluorescence spectra and lifetimes upon addition of dimyristoylphosphatidylserine vesicles clearly show that the peptide interacts with lipids assuming lipid specific conformations. Interestingly, no significative spectroscopic changes are produced by exposure to dimirystoylphosphatidylcholine vesicles both in the gel and liquid-christalline phases, suggesting a requirement for negatively charged lipids during the process of hormone-membrane interaction.     

Degradation of aqueous solution of potassium iodide and sodium cyanide in the presence of carbon tetrachloride

The degradation of potassium iodide, carbon tetrachloride and sodium cyanide has been studied using an ultrasounic probe of 20 kHz frequency. In the case of potassium iodide and sodium cyanide, the rate of degradation was much higher in presence of CCl4. The location of the ultrasonic horn showed a significant effect in the degradation of CCl4.     

Association of riboflavin,caffeine, and sodium salicylate in aqueous solution

We have used UV and visible spectrophotometry to study self-association of aromatic riboflavin molecules (RFN, vitamin B₂, 7,8-dimethyl-10-N-(1′-D-ribityl)isoalloxazine) in aqueous solution (pH 6.86) at T = 298 K, using a dimer model. We have determined the equilibrium dimerization constant for riboflavin, K_dB = 125 ± 40 M⁻¹. We have studied heteroassociation in the system of molecules of 7,8-dimethyl-10-ribitylisoalloxazine with 1,3,7-trimethylxanthine (caffeine) and sodium salicylate (NAS) in aqueous solution (pH 6.86; T = 298 K). We have determined the heteroassociation constants for RFN-NAS and RFN-caffeine molecules in the absence and in the presence of urea in solutions using a modified Benesi-Hildebrand equation: 25 ± 4, 17 ± 3, and 74 ± 11, 53 ± 7 M⁻¹ respectively. We have determined the dimerization constants for NAS (2.7 ± 0.5 M⁻¹) and caffeine (17.0 ± 1.5 M⁻¹). We conclude that heteroassociation of the aromatic molecules leads to a lower effective riboflavin concentration in solution, and the presence of urea in mixed solutions leads to an decrease in the complexation constants for the RFN-NAS and RFN-caffeine systems. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 74, No. 2, pp. 188–194, March–April, 2007.     

Kinetics and mechanism of the reaction of an arenediazonium ion with hydrophilic aminocarboxylic acids in aqueous buffered solution

The reaction of 4‐nitrobenzenediazonium ion, 4NBD, with the aminocarboxylic acids (AA) glycine and serine was studied under acidic conditions by using Linear Sweep Voltammetry (LSV), which allows simultaneous monitoring of 4NBD loss and product formation. Voltammograms of the reaction mixture are complex, showing up to five reduction peaks. The reduction peaks at E_p = ?0.5 and ?1.0 V, not detected in the absence of AA, are associated to products formed in the course of the reaction. The variation of their peak current, i_p, with time shows a complex behavior; that of i_p (E_p = ?1.0 V) follows a biphasic profile with i_p increasing with time up to a maximum after which a decrease is detected, suggestive of formation and subsequent decomposition of a transient intermediate, meanwhile i_p (E_p = ?0.5 V) increases with time after an induction period. The peaks at E_p = ?0.1 and ?0.8 V are associated to the reduction of the diazonium group of 4NBD and, in the presence of AA ([AA] >>> [4NBD]), their peak currents decrease exponentially with time following clean first‐order kinetics for more than 3t_1/2. The variation of k_obs with [AA] at a given pH is linear with an intercept equal to zero and that of log(k_obs) with pH at constant [AA] is also linear. Kinetic evidence is consistent with a reaction mechanism involving an irreversible, rate‐limiting bimolecular step which leads to the formation of an unstable triazene, which further decomposes yielding 4‐nitroaniline among other reaction products. Copyright © 2007 John Wiley & Sons, Ltd.     

Mass spectrometric study of the decomposition pathways of canonical amino acids and α‐lactones in the gas phase

The dissociation pathways of a gas‐phase amino acid with a canonical (non‐zwitterionic) α‐amino acid moiety are studied by using mass spectrometry. Investigation of the canonical amino acid moiety is possible because the ionized amino acid, a sulfonated phenylalanine, has a charge center that is separated from the amino acid, and dissociation occurs by charge‐remote fragmentation. The amino acid is found to dissociate only by loss of NH₃ upon collision‐induced dissociation to form a substituted α‐lactone. The dissociation is consistent with what has been observed previously upon pyrolysis of other α‐substituted carboxylic acids. Decarboxylation, which has also been reported previously for amino acid pyrolysis, is not observed, likely because the product would be a high‐energy, ammonium ylide. The resulting α‐lactone is found to undergo dissociation by decarbonylation to give an aldehyde, and by loss of CO₂. Decarboxylation is calculated to occur through a transition state involving hydride shift coupled with lactone ring‐opening. The transition state is found to be stabilized by the negative charge, and therefore, decarboxylation is more favorable for anions. The results show that remote ionic groups can be used as mostly inert charge carriers to enable mass spectrometry to be used to investigate the gas‐phase physical and chemical properties of different types of functional groups, including amino acids. Copyright © 2015 John Wiley & Sons, Ltd.     

Vibrational spectroscopic studies of the structure of di‐amino acid peptides. Part II: cyclo(L‐Asp‐L‐Asp) in the solid state and in aqueous solution

Solid‐state protonated and N,O‐deuterated Fourier transform infrared (IR) and Raman scattering spectra together with the protonated and deuterated Raman spectra in aqueous solution of the cyclic di‐amino acid peptide cyclo(L ‐Asp‐L ‐Asp) are reported. Vibrational band assignments have been made on the basis of comparisons with previously cited literature values for diketopiperazine (DKP) derivatives and normal coordinate analyses for both the protonated and deuterated species based upon DFT calculations at the B3‐LYP/cc‐pVDZ level of the isolated molecule in the gas phase. The calculated minimum energy structure for cyclo(L ‐Asp‐L ‐Asp), assuming C₂ symmetry, predicts a boat conformation for the DKP ring with both the two L ‐aspartyl side chains being folded slightly above the ring. The CO stretching vibrations have been assigned for the side‐chain carboxylic acid group (e.g. at 1693 and 1670 cm⁻¹ in the Raman spectrum) and the cis amide I bands (e.g. at 1660 cm⁻¹ in the Raman spectrum). The presence of two bands for the carboxylic acid CO stretching modes in the solid‐state Raman spectrum can be accounted for by factor group splitting of the two nonequivalent molecules in a crystallographic unit cell. The cis amide II band is observed at 1489 cm⁻¹ in the solid‐state Raman spectrum, which is in agreement with results for cyclic di‐amino acid peptide molecules examined previously in the solid state, where the DKP ring adopts a boat conformation. Additionally, it also appears that as the molecular mass of the substituent on the C^α atom is increased, the amide II band wavenumber decreases to below 1500 cm⁻¹; this may be a consequence of increased strain on the DKP ring. The cis amide II Raman band is characterized by its relatively small deuterium shift (29 cm⁻¹), which indicates that this band has a smaller N H bending contribution than the trans amide II vibrational band observed for linear peptides. Copyright © 2009 John Wiley & Sons, Ltd.     

A coarse-grained model of the effective interaction for charged amino acid residues and its application to formation of GCN4-pLI tetramer

ABSTRACT

We present a simple coarse-grained model of the effective interaction for charged amino acid residues, such as Glu and Lys, in a water solvent. The free-energy profile as a function of the distance between two charged amino acid side-chain analogues in an explicit water solvent is calculated with all-atom molecular dynamics simulation and thermodynamic integration method. The calculated free-energy profile is applied to the coarse-grained potential of the effective interaction between two amino acid residues. The Langevin dynamics simulations with our coarse-grained potential are performed for association of a small protein complex, GCN4-pLI tetramer. The tetramer conformation reproduced by our coarse-grained model is similar to the X-ray crystallographic structure. We show that the effective interaction between charged amino acid residues stabilises association and orientation of protein complex. We also investigate the association pathways of GCN4-pLI tetramer.     

Complexation of niflumic acid with native and hydroxypropylated α‐ and β‐cyclodextrins in aqueous solution

Interactions between niflumic acid and native and hydroxypropylated α‐ and β‐cyclodextrins (CDs) were investigated by ¹H NMR, UV‐vis spectroscopy, densimetry, and calorimetry at pH = 7.4 (phosphate buffer) and T = 298.15 K. Thermodynamic parameters of 1:1 complex formation were calculated and discussed in terms of influence of cavity size and availability of hydroxypropyl substituents on the complex stability. The ¹H NMR data indicated the inclusion of niflumic acid into macrocyclic cavity of all CDs under study. It was found that both phenyl and pyridine rings of niflumic acid molecule can be included in the cyclodextrin cavity. The co‐existence of two different kinds of 1:1 inclusion complexes in the solution was suggested. In spite of the fact that binding of niflumic acid with α‐cyclodextrin is more enthalpically favorable, stability of the inclusion complexes is very low due to the enthalpy–entropy compensation effect. Complex formation of β‐CDs with niflumic acid is characterized by the higher enthalpy and entropy changes caused by more intense dehydration. Introduction of hydroxypropyl groups in the cyclodextrin molecule was found to promote the binding with niflumic acid. Copyright © 2008 John Wiley & Sons, Ltd.     

Lyotropic model membrane structures of hydrated DPPC: DSC and small-angle X-ray scattering studies of phase transitions in the presence of membranotropic agents

Multibilayer structures of hydrated phospholipids, often considered as model biological membranes, are, from the physical viewpoint, lyotropic liquid crystalline systems undergoing temperature-induced mesomorphic phase transitions. Effects of silver nitrate and urocanic acid on lyotropic phase states of hydrated L-α-dipalmitoylphosphatidylcholine (DPPC) have been studied by small-angle X-ray scattering and differential scanning calorimetry (DSC). Both methods show increase of the main phase-transition temperature (T_m) of hydrated DPPC upon introduction of AgNO₃ or urocanic acid, decrease of pre-transition temperature (T_p) in the presence of urocanic acid and its increase in the presence of AgNO₃. Thus, urocanic acid widened the ripple-phase temperature region. Silver nitrate caused the appearance of an additional high-temperature peak on DSC thermograms, evidencing phase separation in the system. Both agents caused minor effects on DPPC lipid bilayer repeat distance (D) in gel phase, but resulted in noticeable increase of D in the liquid crystal phase with temperature as compared to undoped DPPC structures.     

Stereochemical control in the structures of linear δ,α‐hybrid tripeptides containing tetrahydrofuran amino acids

Structural and electronic properties of diastereomers of tetrahydrofuran amino acids (TAA) derived tripeptide, Boc‐TAA‐Leu‐Val‐OMe, are studied using density functional theory. Predicted secondary folding patterns with hydrogen bonded pseudocycles of different sizes in peptides containing (2R,5S)‐cis‐TAA and (2S,5R)‐cis‐TAA are confirmed by detailed NMR studies of both, and single crystal X‐ray analysis of the former. A novel unusual folding pattern emanating from three‐centered hydrogen bond is found in peptide with (2R,5S)‐cis relationship. Stereochemical control on the orientation of interacting sites is substantiated by structural analysis of the peptides. Using natural bonding orbital and atoms in molecules analyses, charge transfer interactions are analyzed. Copyright © 2010 John Wiley & Sons, Ltd.     

Spectroscopic studies on the molecular interaction between salicylic acid and riboflavin (B2) in micellar solution

The interaction between salicylic acid (SA) and riboflavin (RF) was studied by Fluorescence Resonance Energy Transfer (FRET) in micellar solution. The riboflavin strongly quenches the intrinsic fluorescence of SA by radiative energy transfer. The extent of energy transfer in sodium dodecyl sulphate (SDS) micellar solution of different concentration is quantified from the energy transfer efficiency data. It is seen that the energy transfer is more efficient in the micellar solution. The critical energy transfer distance (R₀) was determined from which the mean distance between SA and RF molecules was calculated. The quenching was found to fit into Stern-Volmer relation. The results on variation of Stern-Volmer constant (K_sv) with quencher concentration obtained at different temperatures suggested the formation of complex between SA and RF. The association constant of complex formation was estimated and found to decrease with temperature. The values of thermodynamic parameters ΔH, ΔG and ΔS at different temperatures were estimated and the results indicated that the molecular interaction between SA and RF is electrostatic in nature.