Halogen bond versus hydrogen bond: The many‐body interactions approach

The analysis of interrelation between halogen bond and hydrogen bond in the (RX)(HNC)(HCN) complexes (R = CH₃, CF₃ and X = Cl, Br, I) was performed on the basis of DFT calculations. Both two‐body additive contributions and three‐body nonadditive contributions to the total interaction energy were discussed. QTAIM was used for topological analysis of electron density. Additionally, QTAIM analysis of electron density was performed for both two‐ and three‐body complexes. The electron charge transfer in trimers showed the dual character of the fragment with halogen atom involved into the investigated interactions—it acts as Lewis acid and Lewis base, depending on the type of interaction considered. The effect of cooperativity of X‐ and H‐bonding was assessed on the basis of many‐body interaction energy and electron density analysis. Additionally, an alternative two‐body model with the same situation (in the context of intermolecular interactions) is investigated. The anti‐cooperative effect was found also for this model.     

键能的分子轨道理论研究2: 键能与Mulliken布居对键强度的 判断的比较

用键能E~A~B和Mulliken布居对化学键强度的判别进行了分析比较。结果表明,键能判据比Mulliken布居判据所得结论更符合实际情况。作为衡量原子间化学键强度的尺度,不仅应考虑原子轨道间的布居因素,还应考虑分子轨道(或原子轨道)的能量因素。     

Experimental evidence and bond characterization of a cyclopropenylgermylene

The reduction of p-anisyl(1,2,3-tri-tert-butylcycloprop-2-en-1-yl)dichlorogermane (1) with potassium in the presence of an excess of tert-butyldimethylsilane in benzene under reflux gave p-anisyl(tert-butyldimethylsilyl)(1,2,3-tri-tert-butylcycloprop-2-en-1-yl)germane (4) in 15% yield. The formation of 4 indicates that p-anisyl(1,2,3-tri-tert-butylcycloprop-2-en-1-yl)germylene (2), which is the first example of a (cycloprop-2-en-1-yl)germylene derivative, was generated and trapped by the hydrosilane. The DFT calculations revealed that the cis-2-p-anisyl-1,3,4-tri-tert-butyl-2-germabicyclo[1.1.0]butane-2,4-diyl structure cis-5 is 8.0 kJ/mol more stable than cis-2. The NBO analysis revealed that cis-5 has a 2-germabicyclo[1.1.0]butane diradical character.     

Theoretical investigation of the hydrogen bond interactions of methanol and dimethylamine with hydrazone and its derivatives

The interactions between hydrogen bond donors (dimethylamine (DMA) and methanol (MeOH)) and acceptors (formaldehyde dimethylhydrazone, acetaldehyde N,N-dimethylhydrazone and N-nitrosodimethylamine) were theoretically investigated by DFT. The hydrogen bonding interactions were found on several bonding sites of the acceptors. The important properties of structure, binding energy, enthalpy of formation, Gibbs free energy of formation and equilibrium constant were investigated. Compared to the monomer, the DMA complexes show a small red shift of the NH-stretching vibrational transition but a significantly intensity enhancement. On the other hand, the MeOH complexes have a large red shift but a relatively small intensity enhancement of the OH-stretching transition. Atoms-in-molecules analysis revealed that several types of hydrogen bond interaction were present in the complexes. Since natural bond orbital analysis overestimated the effect of charge transfer, the more reliable localized molecular orbital energy decomposition analysis was performed and it shows that the major contribution to the total interaction energy is the electrostatic interaction. All these parameters suggest that the hydrogen bond donor strength of MeOH is substantially greater than DMA.

     

Reinvestigation of intramolecular hydrogen bond in malonaldehyde derivatives: An ab initio,AIM and NBO study

The RAHB systems in malonaldehyde and its derivatives at MP2/ 6‐311++G(d,p) level of theory were studied and their intramolecular hydrogen bond energies by using the related rotamers method was obtained. The topological properties of electron density distribution in O? H···O intramolecular hydrogen bond have been analyzed in term of quantum theory of atoms in molecules (QTAIM). Correlations between the H‐bond strength and topological parameters are probed. The results of QTAIM clearly showed that the linear correlation between the electron density distribution at HB critical point and RAHB ring critical point with the corresponding hydrogen bond energies was obtained. Moreover, it was found a linear correlation between the electronic potential energy density, V(r_cp), and hydrogen bond energy which can be used as a simple equation for evaluation of HB energy in complex RAHB systems. Finally, the similar linear treatment between the geometrical parameters, such as O···O or O? H distance, and Lp(O)→σ*_OH charge transfer energy with the intramolecular hydrogen bond energy is observed. © 2010 Wiley Periodicals, Inc., Int J Quantum Chem, 2011     

Generalized valence bond orbital interactions and stabilization (resonance) energies. Part IV. Fullerene-C70

For the molecule fullerene-C₇₀ (one of the higher fullerenes) the stabilization energy (SE)/resonance energy (RE) has been determined in a generalized valence bond (GVB) set-up from the minimization (stabilization) energy associated with Pauli's orbital interactions (POIs) involving all its 70 2p_z GVB carbon orbitals. For this purpose, fullerene-C₇₀ has been considered to contain, at any one time, a unit of four independent carbon skeletons of phenanthrene/anthracene on its spheroidal surface, which have been selected from 25 hexagonal carbon rings present within it in 14 different ways. POIs have been considered in all the phenanthrene/anthracene skeletons and the SE/RE for the molecule has been calculated on the basis of the average contribution of each hexagonal carbon ring in the overall POI process.     

The influence of hydrogen bond formation on the dual luminescence of n-phenyl-2,3-naphthalimide derivatives

Summary The influence of hydrogen bond formation on the spectroscopic properties of dual luminescent naphthalimides was examined in n-hexane using fluorinated alcohols as hydrogen bond donors. Complex formation causes considerable red shift of the dominant intramolecular charge transfer (ICT) fluorescence maxima.     

Theoretical study of the strong intramolecular hydrogen bond and metal-ligand interactions in group 10 (Ni, Pd, Pt) bis(dimethylglyoximato) complexes

The structural and bonding characteristics of the bis(dimethylglyoximato) complexes of group 10 transition metals ([M(dmg)₂], where M = Ni, Pd and Pt) were investigated by means of quantum chemical computations. The equilibrium geometries, energetic and bonding properties were computed using the B3P86 exchange-correlation density functional in conjunction with a 6-311+(+)G^∗∗ basis set. The computations revealed that the strong O⁻?H-O hydrogen bond exists only in the presence of the metal cations. The free (dmg)₂²⁻ ligand has significantly different geometry in which the O⁻?H-O interaction is replaced by N?O-H bonds. The characteristics of the metal-ligand interactions were determined by natural bond orbital analysis.     

Complex dynamics of proton and deuteron transfer in double hydrogen bond of benzoic acid isotopes

This paper deals with spin-lattice relaxation due to classical jumps and incoherent tunnelling of protons and deuterons in hydrogen bonds in solids. An analysis of experimental spin-lattice relaxation data for carboxylic acids suggests that tunnelling does not contribute to spin-lattice relaxation above the temperature at which the thermal energy of molecules and the potential barrier height are equal. It is also shown that contributions to the spin-lattice relaxation rate due to classical motion and incoherent tunnelling in excited vibrational states are negligible for fast proton transfer. However, for deuterons this contribution to spin-lattice relaxation is significant.     

A density functional theory-time-dependent density functional theory investigation of photo-induced hydrogen bond and proton transfer for 2-(3,5-dichloro-2,6-dihydroxy-phenyl)-benzoxazole-6-carboxylicacid

Given the paramount importance of excited-state relaxation in the photochemical process, excited-state hydrogen bonding interactions and excited-state intramolecular proton transfer (ESIPT) are always hot topics. In this work, we theoretically explore the excited-state dynamical behaviors for a novel 2-(3,5-dichloro-2,6-dihydroxy-phenyl)-benzoxazole-6-carboxylicacid (DDPBC) system. As two intramolecular hydrogen bonds (O1 H2⋯N3 and O4 H5⋯O6) exist in the DDPBC structure, we first check if the double proton transfer form cannot be formed in the S1 state. Then, we explore the changes of geometrical parameters involved in hydrogen bonds, based on which we confirm that the dual intramolecular hydrogen bonds are strengthened on photo-excitation. The O1 H2⋯N3 hydrogen bond particularly plays a more important role in excited state. When it comes to the photo-induced excitation, we find charge transfer and electronic density redistribution around O1 H2 and N3 atom moieties. We verify the ESIPT tendency arising from the O1 H2⋯N3 hydrogen bond. In the analysis of the potential energy curves, along with O1 H2⋯N3 and O4 H5⋯O6, we demonstrate that the ESIPT reaction should occur along with O1 H2⋯N3 rather than O4 H5⋯O6. This work not only clarifies the specific ESIPT mechanism for DDPBC system but also paves the way for further novel applications based on DDPBC structure in the future.     

Cooperativity of conventional and unconventional hydrogen bonds involving imidazole

Correlated ab initio calculations are used to investigate the cooperativity of H‐bonds between imidazole and a pair of water molecules. H‐bonds comprise not only the conventional NH … O and OH … N types, but also CH … O and OH … φ (wherein a proton is donated to the delocalized π cloud lying above the aromatic ring). Conventional and OH … φ H‐bonds obey the normal principles of cooperativity, wherein these bonds are strengthened when a central molecule serves simultaneously as both proton donor and acceptor. In contrast, CH … O bonds do not appear to be amenable to such positive cooperativity. When placed in a polarizable medium, all H‐bonds weaken as the dielectric constant of the solvent grows. The qualitative aspects of the cooperativity are not affected by the medium, although some weakening is observed. Calculations also consider the effects of cooperativity on other aspects of the complexes, including the intermolecular distance, the effect on the covalent X‐H bond length, and IR and NMR spectral data. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Interatomic and intraatomic analysis of the density matrix: applications to chlorobenzenes

Bond orders and valence indices have been evaluated employing Mayer’s definitions with orthogonalized atomic orbitals (OAO) obtained from L?wdin orthogonalization over an STO-3G basis set in anab initio formalism. It has been observed that the eigenvalues of the submatrices associated with bond order orbitals. natural hybrid orbitals and natural bond orbitals also reproduce the same values of the bond orders and the valence indices which in turn are quite close to the classical values. Bond orders obtained by a similarity transformation of theab initio density matrix differ appreciably in numerical magnitude.     

Synthesis and characterization of a hyperbranched hydrogen bond acidic carbosilane sorbent polymer

Sorbent polymers can be designed to target molecular interactions with a variety of hazardous chemicals including explosives, chemical agents, narcotics, and toxic industrial chemicals. Applications of functionalized sorbent polymers include preconcentrator devices, SPME fibers, membrane introduction systems, chromatographic stationary phases and coatings for chemical sensors. One common feature of a wide range of hazardous chemicals is their hydrogen bond (h‐b) basicity. In this work, we report on the synthesis and characterization of a h‐b acidic hyperbranched carbosilane fluoroalcohol based sorbent polymer (poly(methyldi(1,1,1‐trifluoro‐2‐trifluoromethyl‐2‐hydroxypent‐4‐enyl)silane; HCSFA2), which is suitable for sorbing these hazardous h‐b basic analytes. Multiple batches of HCSFA2 were characterized with routine composition, spectroscopic, thermal analysis, and inverse gas chromatography (iGC) to evaluate polymer physicochemical properties. In comparison with previously developed h‐b acidic polymers (e.g., FPOL and SXFA), HCSFA2 exhibits a sorption improvement of 10–15 fold for h‐b basic analytes. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3000–3009, 2010     

Synthesis and crystal structure of 1-(aminomethyl)vinylphosphonic acid

A highly efficient and versatile approach to the synthesis of 1-(aminomethyl)vinylphosphonic acid, a constituent of the antibiotic A53868A, is reported. In the crystal, molecules of the acid are linked by strong, linear, symmetric hydrogen bonds involving hydrogen atoms of the phosphonic group.     

Ground state isomerism in betacarboline hydrogen bond complexes: The charge transfer nature of its large Stokes shifted emission

The hydrogen bonding and excited state proton transfer reactions between betacarboline, 9H-pyrido[3,4-b]indole, BC, and 1,1,1,3,3,3-hexafluoropropan-2-ol, HFIP, have been studied in the aprotic solvents cyclohexane and toluene by absorption, steady state and time resolved fluorescence measurements. On the basis of these results and those of previous works (Refs. [A. Sánchez-Coronilla, C. Carmona, M.A. Muñoz, M. Balón, Chem. Phys., 327 (2006) 70] and [A. Sánchez-Coronilla, M. Balón, M.A. Muñoz, C. Carmona, Chem. Phys. 344 (2008) 72]) two main fundamental conclusions can be drawn on the photophysical behaviour of BC. Thus, it is shown, for the first time, that the non-cyclic double hydrogen bond complexes formed through both nitrogen atoms of BC, DHB, can suffer, in their ground state, an isomerisation process. These adducts acquire a quinoid structure in cyclohexane, but maintain a dipolar zwitterionic structure in toluene. Moreover, it is concluded that the observed large Stokes shifted emission, around 520 nm, is not due, as it has been so far generally accepted, to the emission of a BC zwitterionic phototautomer, but to the intramolecular charge transfer, ICT, excited state emissions of the DHB hydrogen bond adducts.     

A new strategy of the chemical route to the cyclopropane structure: direct transformation of benzylidenemalononitriles and malononitrile into 1,1,2,2-tetracyanocyclopropanes

The new reaction was found: the direct formation of cyclopropanes from activated olefins and C-H acids. The action of free halogen or active halogen containing compounds on the equal amounts of benzylidenemalononitriles and malononitrile in basic alcohol solutions results in the formation of 3-aryl-1,1,2,2-tetracyanocyclopropanes in 65-95% yields. Thus, the new simple and efficient way to 3-aryl substituted tetracyanocyclopropanes was found directly from such simple and reasonable starting compounds as benzylidenemalononitriles and malononitrile.     

烷烃中碳氢键离解能的估算及其应用

将烷烃中的C－H键看成氢原子H与烷基Ri相连接而成的Ri－H键，以烷基的 HOMO能级和氢原子的轨道能来关联Ri－H键的离解能BDE。研究表明，烷烃分子中 Ri－H键的离能BDE与烷基Ri的极化效应指数PEI（Ri）有良好的线性关系：BDE＝ c+dPEI(Ri)。所得方程具有良好的估算精度。烷基Ri极化效应指数PEI（Ri）在羟 基自由基与烷烃反应速度常数的定量相关中，也得到良好的应用。     

Structure and properties of hydrogen bonded complexes of pyridine-N-oxide and its derivatives

Molar Kerr constants and electric dipole moments of hydrogen bonded complexes that pyridine-N-oxide and its derivatives form with phenols are studied (a) experimentally, (b) by the vector/tensor addition scheme, and (c) by AM1 and PM3 semi-empirical quantum chemical methods. The data are used to establish the geometry of the complexes. It is shown that for a series of pyridine-N-oxide derivatives, the logarithm of the complex formation equilibrium constant correlates with the charge on the oxygen atom of the N–O group. A method to calculate the first and second complex formation constants based on the electric properties of the individual components of the complex is proposed. A relationship between the polarity of the hydrogen bond and the sum of the charges on the hydrogen and oxygen atoms forming the bond is established for the complexes under study.     

Synthesis and scintillating efficiencies of 2,5-diarylthiazoles with intramolecular hydrogen bond

A series of 2,5-diarylthiazole derivatives exhibiting an intramolecular hydrogen bond has been synthesized. The scintillation efficiency of each member of the series has been determined relative to 2,5-diphenyloxazole. Introduction of an OH group in ortho positions of 2,5-diphenyloxazole and 2,5-diphenylthiazole has led to a red shift of the fluorescence spectra due to intramolecular hydrogen bond, as supported by quantum chemical calculations.