Syntheses and characterization of copper(II) carboxylate dimers formed from enantiopure ligands containing a strong π···π stacking synthon: enantioselective single-crystal to single-crystal gas/solid-mediated transformations

Tri- and tetrafunctional enantiopure ligands have been prepared from 1,8-naphthalic anhydride and the amino acids L-alanine, D-phenylglycine, and L-asparagine to produce (S)-2-(1,8-naphthalimido)propanoic acid (HL(ala)), (R)-2-(1,8-naphthalimido)-2-phenylacetic acid (HL(phg)), and (S)-4-amino-2-(1,8 naphthalimido)-4-oxobutanoic acid (HL(asn)), respectively. Reactions of L(ala)(-) with copper(II) acetate under a variety of solvent conditions has led to the formation and characterization by X-ray crystallography of three similar copper(II) paddlewheel complexes with different axial ligands, [Cu(2)(L(ala))(4)(THF)(2)] (1), [Cu(2)(L(ala))(4)(HL(ala))] (2), and [Cu(2)(L(ala))(4)(py)(THF)] (3). A similar reaction using THF and L(phg)(-) leads to the formation of [Cu(2)(L(phg))(4)(THF)(2)] (4). With the exception of a disordered component in the structure of 4, the naphthalimide groups in all of these compounds are arranged on the same side of the square, central paddlewheel unit, forming what is known as the chiral crown configuration. A variety of π···π stacking interactions of the 1,8-naphthalimide groups organize all of these complexes into supramolecular structures. The addition of the amide group functionality in the L(asn)(-) ligand leads to the formation of tetrameric [Cu(4)(L(asn))(8)(py)(MeOH)] (5), where reciprocal axial coordination of one of the amide carbonyl oxygen atoms between two dimers leads to the tetramer. Extensive supramolecular interactions in 5, mainly the π···π stacking interactions of the 1,8-naphthalimide supramolecular synthon, support an open three-dimensional structure containing large pores filled with solvent. When crystals of [Cu(4)(L(asn))(8)(py)(MeOH)] are exposed to (S)-ethyl lactate vapor, the coordinated methanol molecule is replaced by (S)-ethyl lactate, bonding to the copper ion through the carbonyl oxygen, yielding [Cu(4)(L(asn))(8)(py)((S)-ethyl lactate)] (6) without a loss of crystallinity. With the exception of the replacement of the one axial ligand, the molecular structures of 5 and 6 are very similar. In a similar experiment of 5 with vapors of (R)-ethyl lactate, again a change occurs without a loss of crystallinity, but in this case the (R)-ethyl lactate displaces only slightly more than half of the axial methanol molecules forming [Cu(4)(L(asn))(8)(py){((R)-ethyl lactate)(0.58)(MeOH)(0.42)}] (7). Importantly, in 7, the (R)-ethyl lactate coordinates through the hydroxyl group. When crystals of [Cu(4)(L(asn))(8)(py)(MeOH)] are exposed to vapors of racemic ethyl lactate, the coordinated methanol molecule is displaced without a loss of crystallinity exclusively by (S)-ethyl lactate, yielding a new form of the tetramer [Cu(4)(L(asn))(8)(py)((S)-ethyl lactate)], in which the ethyl lactate in the pocket bonds to the copper(II) ion through the carbonyl oxygen as with 6. Exposure of [Cu(4)(L(asn))(8)(py){((R)-ethyl lactate)(0.58)(MeOH)(0.42)}] to racemic ethyl lactate yields a third form of [Cu(4)(L(asn))(8)(py)((S)-ethyl lactate)], where the three forms of [Cu(4)(L(asn))(8)(py)((S)-ethyl lactate)] have differences in the number of ordered (S)-ethyl lactate molecules located in the interstitial sites. These results demonstrate enantioselective bonding to a metal center in the chiral pocket of both 5 and 7 during single-crystal to single-crystal gas/solid-mediated exchange reactions.     

Copper(II) carboxylate tetramers formed from an enantiopure ligand containing a π-stacking supramolecular synthon: single-crystal to single-crystal enantioselective ligand exchange

An enantiopure ligand built from connecting the π···π stacking 1,8-naphthalimide supramolecular synthon with L-asparagine, L(asn)(-), forms tetrameric [Cu(4)(L(asn))(8)(py)(MeOH)]. The methanol ligand, located in a chiral pocket, is replaced enantioselectively when exposed to racemic ethyl lactate vapor to yield [Cu(4)(L(asn))(8)(py)((S)-ethyl lactate)], in a single-crystal to single-crystal gas/solid transformation.     

Thermodynamic properties and molecular dynamics of (NH4)2Zn(SO4)2·6H2O studied by single-crystal NMR and MAS NMR

The thermodynamic properties and molecular dynamics of (NH₄)₂Zn(SO₄)₂·6H₂O were investigated using thermogravimetric analysis, differential scanning calorimetry, and nuclear magnetic resonance observations. The first mass loss occurs near 350 K (= T _d) and is interpreted as the onset of partial thermal decomposition. The temperature dependences of the spin–lattice relaxation time in laboratory frame T ₁ and in rotating frame T _1ρ for H nuclei were studied near T _d and T _C1. The increase in T ₁ near T _d seems to be related to the ammonium protons, and the abrupt decrease in T _1ρ near T _d can be explained due to the loss of H₂O.     

A single-crystal fourier transform raman spectroscopic study of [Cr3O(OOCCH3)6(H2O)3]Cl·5H2O

Solution and single-crystal FT-Raman spectroscopy with polarization analysis have been used to assign a frequency of 147 cm⁻¹ to the totally symmetric Cr₃O stretching vibration of the complex cation in the dark coloured compound [Cr₃O(OOCCH₃)₆(H₂O)₃]Cl ·5H₂O. For this vibration, the polarizability derivatives parallel to the metal triangle are shown to be greater in magnitude than that perpendicular to the triangle.     

Substituent effects on CL···N, S···N, and P···N noncovalent bonds

Cl, S, and P atoms have previously been shown as capable of engaging in a noncovalent bond with the N atom on another molecule. The effects of substituents B on the former atoms on the strength of this bond are examined, and it is found that the binding energy climbs in the order B = CH(3) < NH(2) < CF(3) < OH < Cl < NO(2) < F. However, there is some variability in this pattern, particularly for the NO(2) group. The A···N bonds (A = Cl, S, P) can be quite strong, amounting to as much as 10 kcal/mol. The binding energy arises from approximately equal contributions from its induction and electrostatic components, although the former becomes more dominant for the stronger bonds. The induction energy is due in large measure to the transfer of charge from the N lone pair to a B-A σ* antibonding orbital of the electron-acceptor molecule containing Cl, S, or P. These A···N bonds typically represent the lowest-energy structure on each potential energy surface, stronger than H-bonds such as NH···F, CH···N, or SH···N.     

Weak H-bonds. Comparisons of CH···O to NH···O in proteins and PH···N to direct P···N interactions

Whereas CH···O H-bonds are usually weaker than interpeptide NH···O H-bonds, this is not necessarily the case within proteins. The nominally weaker CH···O are surprisingly strong, comparable to, and in some cases stronger than, the NH···O H-bonds in the context of the forces that hold together the adjacent strands in protein β-sheets. The peptide NH is greatly weakened as proton donor in certain conformations of the protein backbone, particularly extended structures, and forms correspondingly weaker H-bonds. The PH group is a weak proton donor, but will form PH···N H-bonds. However, there is a stronger interaction in which P can engage, in which the P atom, not the H, directly approaches the N electron donor to establish a direct P···N interaction. This approach is stabilized by the same sort of electron transfer from the N lone pair to the P-H σ* antibond that characterizes the PH···N H-bond.     

C-H···π interactions in the CHBrF2···HCCH weakly bound dimer

The microwave spectra of four isotopologues of the CHBrF(2)···HCCH weakly bound dimer have been measured in the 6-18 GHz region using chirped-pulse and Balle-Flygare Fourier-transform microwave spectroscopy. Spectra of (13)CH(79)BrF(2) and (13)CH(81)BrF(2) monomers have also been measured, and spectroscopic constants are reported. Measurement of spectra for the (79)Br and (81)Br isotopologues of CHBrF(2) complexed with both (12)C(2)H(2) and (13)C(2)H(2) have allowed the determination of a structure with C(s) symmetry for this complex. CHBrF(2) interacts with the triple bond of acetylene via a C-H···π contact (R(H···π) = 2.670(8) ?) with the Br atom lying in the ab plane, located 3.293(40) ? from a hydrogen atom of the HCCH molecule. The structure of CHBrF(2)···HCCH has been compared with recently studied related acetylene complexes, including a comparison with (and further structural analysis of) the CHClF(2)···HCCH complex.     

Competition between H···π and H···O interactions in furan heterodimers

Here the interactions of furan with HZ (Z = CCH, CCF, CN, Cl, and F) are studied using a variety of electron correlation methods (MP2, CCSD(T), DFT-SAPT) and correlation-consistent triple- and quadruple-ζ basis sets including complete basis set (CBS) extrapolation. For Fu-HF all methods agree that a n-type structure with a hydrogen bridge between the oxygen lone-pair of furan and the hydrogen atom of HF is the global minimum structure. It is found to be significantly more stable than a π-type structure where the hydrogen atom of HF points toward the π system of furan. For the other four dimers MP2 and DFT-SAPT predict the π-type structure to be somewhat more stable, while CCSD(T) favors the n-type structure as the global minimum for Fu-HCl and predicts both structures as nearly isoenergetic for Fu-HCCH and Fu-HCCF. From a geometrical point of view, the Fu-HCN dimer structures are more related to those of the Fu-HCl complex than to Fu-HCCH. The different behavior of HCCF and HF upon complexation with furan evidence the effect of the presence of a π system in the aggregation of fluorine derivatives. It is shown that aggregates of furan cannot be understood by means of dipole-dipole and electrostatic analysis only. Yet, through a combined and detailed analysis of DFT-SAPT energy contributions and resonance effects on the molecular charge distributions a consistent explanation of the aggregation of furan with both π electron rich molecules and halogen hydrides is provided.     

SH···N and SH···P blue-shifting H-bonds and N···P interactions in complexes pairing HSN with amines and phosphines

Quantum calculations at the MP2/aug-cc-pVDZ level examine complexes pairing HSN with aliphatic amines and phosphines. Complexes are cyclic and contain two attractive interactions. The first is a SH···N/P H-bond in which the S-H covalent bond contracts and shifts its stretching frequency to the blue, more so for amines than for phosphines. The second interaction is different for the amines and phosphines. The amines engage in a NH···N H-bond comparable in strength to the aforementioned SH···N interaction. In contrast, the second interaction in the phosphine complexes is a direct N···P attraction without an intervening H. This interaction is due in part to opposite partial charges on the N and P atoms, as well as covalent forces generated by charge transfer effects.     

·亮点介绍·

新型离去基团:1,3-二羰基Angew.Chem.Int.Ed.2011,50,2975～2978有机合成化学中的反应(除重排反应)通常不涉及到C—C键的骨架变化.探索C—C键选择性切断及其反应规律,发展C—C键活化的新模式,成为有机合成化学中非常具有挑战性的研究课题。     

·读者园地·

问 :1 .在燃烧法测定碳的气路中 ,对放置在除尘管中的过滤棉有什么要求 ?2 .怎样合理使用燃烧炉瓷管 ?3.对气体容量定碳仪的气密性有何要求 ?——湖南作者　　张林　　　　答 1 :通常除尘管为一直径 1 0～ 1 5mm,长 80～ 1 0 0 mm的玻璃滤气管 ,管内充塞适量脱脂棉 (近燃烧管一端塞少许石棉 ,以防火星溅入致使棉花着火 )或玻璃棉以滤除金属氧化物粉尘。所用脱脂棉应干燥 ,因为潮湿的棉花会吸留少量 CO2 。若使用玻璃棉时 ,应事先将其用盐酸浸煮 ,然后洗净烘干。否则会因玻璃棉带有碱性而吸收 CO2 ,使测定结果发生错误。工作过程中还应经…     

Structure of 7-azaindole···2-fluoropyridine dimer in a supersonic jet: competition between N-H···N and N-H···F interactions

In the present work, we have investigated the structure of 7-azaindole···2-fluoropyridine dimer in a supersonic jet by employing resonant two photon ionization (R2PI), IR-UV, and UV-UV double resonance spectroscopic techniques combined with quantum chemistry calculations. The R2PI spectrum of the dimer is recorded by electronic excitation of the 7-azaindole moiety, and a few low frequency intermolecular vibrations of the dimer are clearly observed in the spectrum. The electronic origin band of the dimer is red-shifted by 1278 cm(-1) from the S(1) ← S(0) origin band of 7-azaindole monomer. The presence of a single conformer of the dimer is confirmed by IR-UV and UV-UV hole-burning spectroscopic techniques. RIDIR (Resonant ion dip infrared) spectrum of the dimer shows a red-shift of 265 cm(-1) in the N-H stretching frequency with respect to that of the 7-azaindole monomer. Two planar double hydrogen bonded cyclic structures of the dimer have been predicted from DFT calculations. Comparison of experimental and theoretical N-H stretching frequencies confirms that the observed dimer is stabilized by N-H···N and C-H···N hydrogen bonding interactions. The less stable conformer with N-H···F and C-H···N interactions are not observed in the experiment. The competition between N-H···N and N-H···F interactions in the two dimeric structures are discussed from natural bond orbital (NBO) analysis. The current results demonstrate that fluorine makes a hydrogen bond of intermediate strength through cooperative interaction of another hydrogen bond (C-H···N) present in the dimer, although fluorine is believed to be very weak hydrogen bond acceptor.     

Noncovalent functionalization of graphene via π-hole···π and σ-hole···π interactions

Physisorption of bromopentafluorobenzene (C₆F₅Br) on graphene can occur due to the unique σ-hole and π-hole characters of C₆F₅Br and the rich π-electrons region of graphene, leading to the formation of three types of π-hole···π and σ-hole···π interactions. The π-hole···π interactions are even stronger than the σ-hole···π interactions. The property of graphene was significantly affected by such physisorption.

     

XH···HOCl···YH体系中氢键与卤键协同效应的理论研究

采用MP2方法在6-311++G(d,p)基组水平上对三分子体系XH…HOCl…YH(X=F,Cl,Br,OH;Y=F,Cl,Br,OH,NH2)中氢键和卤键之间的协同效应进行了研究。研究过程中计算了二体XH…HOCl中氢键,二体HOCl…YH中卤键和三体XH…HOCl…YH中氢键和卤键的键长、分子间的相互作用能以及它们的振动频率。发现和二体相比,三体中氢键和卤键的键长缩短,分子间的相互作用能增大,振动频率增大。再通过AIM分析,比较了二体、三体中氢键和卤键键鞍点处电子密度强弱的变化,结果电子密度在三体中明显增大,分析结果还显示氢键和卤键属于分子间弱相互作用的范畴,它们的静电作用和二体相比也有所增强。这些现象都表明三体中氢键和卤键之间存在正的协同效应。     

Cooperativity between S···π and Rg···π in the OCS···C6H6···Rg (Rg = He, Ne, Ar, and Kr) van der Waals complexes

The complexes OCS···C(6)H(6), C(6)H(6)···Rg, and OCS···C(6)H(6)···Rg (Rg = He, Ne, Ar, and Kr) have been studied by means of MP2 calculations and QTAIM analyses. The optimized geometries of the title complexes have C(6v) symmetry. The intermolecular interactions in the OCS···C(6)H(6)···Rg complexes are comparatively stronger than that in the OCS···C(6)H(6) complex, which prove that the He, Ne, Ar, and Kr atoms have the ability to form weak bonds with the benzene molecule. In QTAIM studies, the π-electron density of benzene was separated from the total electron density. The molecular graphs and topological parameters of the OCS···πC(6)H(6), πC(6)H(6)···Rg, and OCS···πC(6)H(6)···Rg complexes indicate that the interactions are mainly attributed to the electron density provided by the π-bonding electrons of benzene and the top regions of the S and Rg atoms. Charge transfer is observed from the benzene molecule to SCO/Rg in the formation of the OCS···C(6)H(6), C(6)H(6)···Rg, and OCS···C(6)H(6)···Rg complexes. Molecular electrostatic potential (MEP) analyses suggest that the electrostatic energy plays a pivotal role in these intermolecular interactions.     

Microwave spectroscopic and theoretical studies on the phenylacetylene···H2O complex: C-H···O and O-H···π hydrogen bonds as equal partners

Rotational spectra of five isotopologues of the title complex, C(6)H(5)CCH···H(2)O, C(6)H(5)CCH···HOD, C(6)H(5)CCH···D(2)O, C(6)H(5)CCH···H(2)(18)O and C(6)H(5)CCD···H(2)O, were measured and analyzed. The parent isotopologue is an asymmetric top with κ = -0.73. The complex is effectively planar (ab inertial plane) and both 'a' and 'b' dipole transitions have been observed but no c dipole transition could be seen. All the transitions of the parent complex are split into two resulting from an internal motion interchanging the two H atoms in H(2)O. This is confirmed by the absence of such doubling for the C(6)H(5)CCH···HOD complex and a significant reduction in the splitting for the D(2)O analog. The rotational spectra, unambiguously, reveal a structure in which H(2)O has both O-H···π (π cloud of acetylene moiety) and C-H···O (ortho C-H group of phenylacetylene) interactions. This is in agreement with the structure deduced by IR-UV double resonance studies (Singh et al., J. Phys. Chem. A, 2008, 112, 3360) and also with the global minimum predicted by advanced electronic structure theory calculations (Sedlack et al., J. Phys. Chem. A, 2009, 113, 6620). Atoms in Molecule (AIM) theoretical analysis of the complex reveals the presence of both O-H···π and C-H···O hydrogen bonds. More interestingly, based on the electron densities at the bond critical points, this analysis suggests that both these interactions are equally strong. Moreover, the presence of both these interactions leads to significant deviation from linearity of both hydrogen bonds.