Relative predominance of azo and hydrazone tautomers of 4-carboxyl-2,6-dinitrophenylazohydroxynaphthalenes in binary solvent mixtures

Azo-hydrazone tautomerism is a phenomenon that occurs in azo dyes possessing substituents conjugated to the azo linkage which has labile proton that can be exchanged intramolecularly. Thus the predominance of one tautomer over another is a function of many factors among which are solvent polarity, solvent type, solute-solvent interactions and the structure of the dye molecule itself. The 4-carboxyl-2,6-dinitrophenylazohydroxynaphthalenes, previously shown to exhibit azo-hydrazone tautomerism, were studied for the relative predominance of one form over another based on interaction at the microenvironment of binary solvent mixtures containing DMF and non-hydrogen bonding (CCl(4)), hydrogen bond donor (toluene, chloroform), hydrogen bond acceptor (acetonitrile, acetone) and the alcohols; ethanol and methanol as solvent pairs. The three dyes gave two main bands in the 50:50 mixture of DMF with these solvents consisting of a high energy band at 250-382 nm while the low energy bands for the dyes occurred at 415-485 nm. Spectral shifts in the binary solvent mixtures were related to the solvent dipolarity, basicity of the less polar component relative to DMF, substituent type, molar transition energy, formation constant for the hydrogen-bonding solvated complexes and the standard free energy change for hydrogen bonding with DMF. The relative predominance of the hydrazone tautomer bears a direct relationship to the basicity of the solvent, presence of hydrogen bond donor substituent and was associated with high molar transition energies and low formation constant. The microenvironment surrounding the dye molecules played a major role in the stability of one tautomer relative to the other.     

丙烯酰胺-二氰二胺大单体及其与苯乙烯共聚物的研究(Ⅱ)——共聚物与甲基橙及其同系物的相互作用

用平衡渗析法研究了主链含疏水基、侧链含亲水基的接枝共聚物P-M-St和二氰二胺同甲醛、氧化铵的缩合物D-F与甲基橙MO及乙基橙EO,橙黄ⅣO-Ⅳ相互作用的热力学.由Klotz方程求得键合常数K₁和△G、△H和△S.D-F与P-M-St相比,其与MO的键合作用较弱.P-M-St与染料的键合程度:O-Ⅳ>EO>MO.脲或甲醇能削弱高聚物与染料的相互作用.     

Hydrogels formed by l-histidine derivatives with highly selective release for charged dyes

Hydrogels formed by UIPCA with CA could selectively release anionic dyes, chrome azurol S (A) and cationic dyes, methyl violet (B), showing excellent separating ability for differently charged dyes.     

Comparative studies on biophysical interactions between 4-dicyanomethylene-2,6-dimethyl-4H-pyran (DDP) with bovine serum albumin (BSA) and human serum albumin (HSA) via photophysical approaches and molecular docking techniques

Photophysical studies of 4-Dicyanomethylene-2,6-Dimethyl-4H-Pyran (DDP) dye with globular proteins, Human Serum Albumin (HSA) and Bovine Serum Albumin (BSA) were carried out in aqueous solution. An isosbestic point resulted on the addition of serum albumins, which signifies a complex or an equilibrium state of DDP dye with albumin. Addition of BSA to DDP dye results in a fluorescence enhancement accompanied with a significant hypsochromic shift, whereas with that of HSA, a fluorescence quenching with a considerable blue shift resulted. Excited state studies of DDP dye with serum albumins portray that the role of binding sites of dye with albumins vary considerably and the nature of interaction is presumably attributed to combined hydrogen-bonding and hydrophobic interactions. Molecular docking studies of DDP dye with albumins and two other derivatives 4-(Dicyanomethylene)-2-methyl-6-(4-dimethylaminostyryl)-4H-pyran (DCM) dye and 4-(Dicyanomethylene)-2-methyl-6-(4-t-buyl)-4H-pyran (DCT) dyes with BSA and HSA elucidates that the hydrogen-bonding interaction accompanied with several hydrophobic, pi–pi an pi–alkyl interactions coexist between dye and albumins. The binding energy, intermolecular energy and stability of the DDP, DCM and DCT dyes through docking techniques with albumins authenticate that the dye predominantly acts as hydrogen-bonding acceptor site and the protein molecule as the donor. DDP dye prefers to exist in four different binding sites of HSA, whereas, in the case of BSA, the most preferred site is found to be hydrophobic domain (site I). Interestingly, the most preferred site of DCT dye is III A subdomain of HSA, whereas DCM dye is oriented towards I B subdomain. DDP and DCT are smaller in size and reside in the domain preferred for smaller ligands (II A and IIIA) as resulted in several drugs-HSA interaction whereas DCM dye which is categorized as medium to larger ligand based on the extended structure resides in the most favoured site IB. Fluorescence techniques in combination with molecular docking methods elucidate binding characteristics and the domain in which the dye resides in a micro heterogeneous environment is established in this study.     

Effect of Hydrophobic Chain of Dye Molecule and Surface of Active Crystal on the Organized Assemblies Formation of Dyes

Four derivatives of 5,5',6,6'-tetrachlorobenzimidazolocarbocyanine iodide with different long alkyl chain substituents in N-position of polymethine chromophore have been used for investigating the influence of hydrophobicity of dyes on the aggregation.It has been found that all dyes formed monomeric species in methyl alcohol. However, after addition of water to CH_3OH to change the polarity of the solvent, difference between dyes appeared.Addition of inorganic salt facilitated the J-aggregation of easy soluble dye, but it seems useless for the sparely soluble dye.Platelets cut from AgBr polycrystal or pressed AgBr powder have been used as substrate for adsorbing dyes. After addition of hexanoic acid, eventually the J-aggregate on AgBr surface could be destroyed.Voltammetry is a useful tool to investigate the interaction between dyes and AgBr. Experimental results showed that the longer the carbon chain substituents is, the stronger the interaction between AgBr and dyes would be.     

Non‐covalent Versus Covalent Control of Self‐Assembly and Chirality of Nile Red‐modified Nucleoside and DNA

A DNA‐based covalent versus a non‐covalent approach is demonstrated to control the optical, chirooptical and higher order structures of Nile red ( Nr ) aggregation. Dynamic light scattering and TEM studies revealed that in aqueous media Nr ‐modified 2′‐deoxyuridine aggregates through the co‐operative effect of various non‐covalent interactions including the hydrogen bonding ability of the nucleoside and sugar moieties and the π‐stacking tendency of the highly hydrophobic dye. This results in the formation of optically active nanovesicles. A left‐handed helically twisted H‐type packing of the dye is observed in the bilayer of the vesicle as evidenced from the optical and chirooptical studies. On the other hand, a left‐handed helically twisted J‐type packing in vesicles was obtained from a non‐polar solvent (toluene). Even though the primary stacking interaction of the dye aggregates transformed from H→J while going from aqueous to non‐polar media, the induced supramolecular chirality of the aggregates remained the same (left‐handed). Circular dichroism studies of DNA that contained several synthetically incorporated and covalently attached Nr ‐modified nucleosides revealed the formation of helically stacked H‐aggregates of Nr but—in comparison to the noncovalent aggregates—an inversed chirality (right‐handed). This self‐assembly propensity difference can, in principle, be applied to other hydrophobic dyes and chromophores and thus open a DNA‐based approach to modulate the primary stacking interactions and supramolecular chirality of dye aggregates.     

Effect of the medium on the ionization constants of some triazole compounds

The deprotonation and acid ionization constants of some triazole derivatives in various aqueous-organic solvent mixtures were determined potentiometrically at 20 degrees C. The organic solvents used were methanol, ethanol, DMF, DMSO, acetonitrile, acetone and dioxane. The high stabilization of both the non-protonated form by dispersion forces and of the proton by its interaction with the organic solvent are the main factors influencing the deprotonation constant in aqueous mixtures of methanol, ethanol, DMF or DMSO. On the other hand, the hydrogen bonding interactions and the solvent basicity, in addition to the electrostatic effect, contribute to the major effects in the deprotonation process (in solutions enriched with acetonitrile, acetone or dioxane) and the acid ionization process in different aqueous-organic solvent mixtures. Some thermodynamic parameters (delta H, delta G, delta S) of the ionization processes in a pure aqueous medium are also determined and discussed.     

疏水相互作用对阳离子聚电解质与染料键合的影响

用平衡渗析法研究了阳离子聚电解质PAm·MG 和P(St-Am·MG)与甲基橙(MO)及P(St-Am·MG)与MO的同系物乙基橙(EO)、橙武Ⅳ(O-Ⅳ)在25、35、45和55 ℃下相互作用的热力学. 由K1otz方程, 求得键合常数K_1和热力学参数ΔG、ΔH及ΔS. 含疏水基的P(St-Am·MG)与MO的键合能力比不含疏水基的PAm·MG 强. P(St-Am·MG)与不同染料作用时, 键合程度为O-Ⅳ>EO>MO, 即染料的疏水性越强, 与高聚物的作用程度越大.键合体系加入脲或甲醇, 疏水相互作用受到破坏, 导致高聚物与染料之间的键合受到削弱.     

Solute-solvent and solvent-solvent interactions in the preferential solvation of 4-[4-(dimethylamino)styryl]-1-methylpyridinium iodide in 24 binary solvent mixtures

The molar transition energy (E(T)) polarity values for the dye 4-[4-(dimethylamino)styryl]-1-methylpyridinium iodide were collected in binary mixtures comprising a hydrogen-bond accepting (HBA) solvent (acetone, acetonitrile, dimethyl sulfoxide (DMSO), and N,N-dimethylformamide (DMF)) and a hydrogen-bond donating (HBD) solvent (water, methanol, ethanol, propan-2-ol, and butan-1-ol). Data referring to mixtures of water with alcohols were also analyzed. These data were used in the study of the preferential solvation of the probe, in terms of both solute-solvent and solvent-solvent interactions. These latter interactions are of importance in explaining the synergistic behavior observed for many mixed solvent systems. All data were successfully fitted to a model based on solvent-exchange equilibria. The E(T) values of the dye dissolved in the solvents show that the position of the solvatochromic absorption band of the dye is dependent on the medium polarity. The solvation of the dye in HBA solvents occurs with a very important contribution from ion-dipole interactions. In HBD solvents, the hydrogen bonding between the dimethylamino group in the dye and the OH group in the solvent plays an important role in the solvation of the dye. The interaction of the hydroxylic solvent with the other component in the mixture can lead to the formation of hydrogen-bonded complexes, which solvate the dye using a lower polar moiety, i.e. alkyl groups in the solvents. The dye has a hydrophobic nature and a dimethylamino group with a minor capability for hydrogen bonding with the medium in comparison with the phenolate group present in Reichardt's pyridiniophenolate. Thus, the probe is able to detect solvent-solvent interactions, which are implicit to the observed synergistic behavior.     

Hydrophobic Effects in Adsorptive Protein Immobilization

In an aqueous environment, noncovalent polar bonding (i.e., through ionic, charge transfer, or hydrogen bonds) may be assumed to be relatively weak because of thestrong chargesolvating and hydrogen-bonding ability of water. It has been suggested, the refore, that apolar (hydrophobic) forces may be the most important single factor providing the driving force for noncovalent intermolecular interactions in an aqueous milieu [1, 2]. However, in aqueous solutions electrostatic interaction may become important when the pertaining charges are shielded by accompanying hydrophobic groups from the quenching effect of water [1]. In this connection it may be pointed out that, on account of the low dielectric constant of the hydrophobic interior of a protein, intramolecular interaction of oppositely charged surface groups can be strong indeed [3].     

Aqueous urea solutions: structure, energetics, and urea aggregation

Urea is ubiquitously used as a protein denaturant. To study the structure and energetics of aqueous urea solutions, we have carried out molecular dynamics simulations for a wide range of urea concentrations and temperatures. The hydrogen bonds between urea and water were found to be significantly weaker than those between water molecules, which drives urea self-aggregation due to the hydrophobic effect. From the reduction of the water exposed urea surface area, urea was found to exhibit an aggregation degree of ca. 20% at concentrations commonly used for protein denaturation. Structurally, three distinct urea pair conformations were identified and their populations were analyzed by translational and orientational pair distribution functions. Furthermore, urea was found to strengthen water structure in terms of hydrogen bond energies and population of solvation shells. Our findings are consistent with a direct interaction between urea and the protein as the main driving force for protein denaturation. As an additional, more indirect effect, urea was found to enhance water structure, which would suggest a weakening of the hydrophobic effect.     

Dye Probes of Nanoclusters in Liquids

Calculations have been carried out to optimize the structure of Van der Waals complexes of methanol with N-methyl-2-nitroaniline, a dye capable of shifts in visible and ultraviolet spectra that depend on (1) solvent dielectric, (2) solvent shell structure, and (3) hydrogen bonding to a slight extent. Hartree–Fock–Roothaan calculations with various basis sets and single-excitation configuration interaction (SCI) are compared to Density–Functional–Theory Time-Dependent Hartree–Fock (DFT-TD) results for three low-energy ultraviolet electronic transitions. Energy-minimized structures are reported for a trimeric complex of two methanol-one water as found using a 6-311G** basis indicating two possible hydrogen-bonding schemes. The effect of a dielectric medium on the ultraviolet spectrum is compared to gas-phase clusters. Electronic transitions are also given for the dye-probe complexed with four or five methanol molecules finding good agreement with observed shifts in the ultraviolet spectrum as found with the TDHF-DFT formalism for the lowest energy transition near 425nm.     

Kinetics of Fading of Some Triphenylmethane Dyes: Effects of Electric Charge,Substituent, and Aqueous Binary Mixtures of Dimethyl Sulfoxide and 2‐Propanol

The rate constants of alkaline fading of a number of triphenylmethane (TPM) dyes including methyl green (ME²⁺), brilliant green (BG⁺), fuchsin acid (FA^2?), and bromophenol blue (BPB^2?) were obtained in aqueous binary mixtures of 2‐propanol (protic solvent) and dimethyl sulfoxide (DMSO) (aprotic solvent) at different temperatures. It was observed that the reaction rate constants of BG⁺ and ME²⁺ increased and those of FA^2? and BPB^2? decreased with an increase in weight percentages of aqueous 2‐propanol and DMSO binary mixtures. 2‐Propanol and DMSO interact with the used TPM molecules through hydrogen bonding and ion–dipole interaction, respectively, in addition to their hydrophobic interaction with TPM dyes. The fundamental rate constants of a fading reaction in these solutions were obtained by the SESMORTAC model. Also, the effect of electric charge and substituent groups of a number of TPM dyes on their alkaline fading rate was studied.     

Formation mechanism of supramolecular hydrogels in the presence of L-phenylalanine derivative as a hydrogelator

A novel chiral hydrogelator, L-phenylalanine derivative can self-assemble in aqueous media at different pH values to form supramolecular hydrogels. The images of the FE-SEM indicate that different aggregates of TC(18)PheBu in morphology were formed, which further lead to the formation of spherical crystallites as observed by polarized optical microscope (POM). The FT-IR spectra of the supramolecular hydrogels reveal that intermolecular hydrogen-bonding and hydrophobic interactions are the driving forces for the self-assembly of TC(18)PheBu. Fluorescence spectra of TC(18)PheBu in aqueous solutions in the presence of pyrene as a probe further confirm the importance of hydrophobic interactions for the self-assembly. The circular dichroism (CD) spectra of TC(18)PheBu in supramolecular hydrogels in the presence of KF indicate that the hydrogen-bonding interaction can be disrupted by fluoride ions, which further confirm the importance of hydrogen bonding for the self-assembly of TC(18)PheBu.     

A Supramolecular Polymer of Nitroxide Radicals via Hydrogen Bonding

Summary: 2,2,6,6-Tetramethylpiperidinyl-N-oxy (TEMPO) is a robust nitroxide radical molecule under ambient conditions. We found that the TEMPO derivatives act as a proton acceptor to form an intermolecular hydrogen-bonding complex with many kinds of phenol or urea derivatives. ORTEP analysis of the crystals of TEMPO with the phenol derivatives indicated that hydrogen bonding could be formed between the oxygen of the nitroxide and the phenolic proton and the N O bond of the hydrogen-bonded TEMPO was lengthened in comparison to that of the free N O bond. The formation constant of the hydrogen-bonding complex of TEMPO with the phenol or urea derivatives in a chloroform solution was spectroscopically determined by IR to be 10–100 M⁻¹. Hydrogen bonding of the thelechelic bis-TEMPO derivatives with thelechelic bis-phenol or bis-urea derivatives provided a supramolecular structure. The estimated molecular weights of the supramolecules in the chloroform solution, based on DOSY-NMR spectroscopy, were 3000–4000. The potential of the nitroxide radical's supramolecule as a new functional material is also described.     

Solvent effects in the interaction of methyl-beta-cyclodextrin with solvatochromic merocyanine dyes

The UV-vis spectroscopic behavior of dyes: 2,6-diphenyl-4-(2,4,6-triphenylpyridinium-1-yl)phenolate (1) and 4-[(1-methyl-4(1H)-pyridinylidene)-ethylidene]-2,5-cyclohexadien-1-one (2) was investigated in solutions of methyl- beta-cyclodextrin (methyl-beta-CyD), using water, methanol, ethanol, propan-2-ol, butan-1-ol, acetone, acetonitrile, N,N-dimethylformamide (DMF), dimethyl sulfoxide (DMSO), N,N-dimethylacetamide (DMA), chloroform and dichloromethane as solvents. In aqueous solutions of dye (2) the addition of M-beta-CD leads to a bathochromic shift (of the maximum absorption), showing that the probe was transferred to a microenvironment of lower polarity and suggesting the formation of a 1 : 1 dye (2) : CyD inclusion complex, with a binding constant of 128.5 +/- 3.5 dm(3) mol(-1). Data for dye 2 in alcohols showed hypsochromic shifts, which increased in the following order: methanol < ethanol < propan-2-ol < butan-1-ol. These observations appear to reflect dye-solvent interactions through hydrogen bonding. If dye-solvent interactions are strong, the CyD-dye interactions are consequently weak, but the latter increase in importance when the dye-solvent interaction becomes weaker. With hydrogen-bond accepting solvents, data for both dyes showed clearly increasing hypsochromic shifts following the order: DMSO < DMA < DMF < acetone < acetonitrile. This order is exactly the inverse of the increasing order of basicity of the medium. This indicates that the dominant factor for the observed effects in these solvents is the solvent-CyD interaction through hydrogen bonding involving the hydroxyl groups of the CyD and the basic groups of the solvents. These interactions diminish in intensity if the basic character of the medium is reduced, increasing the capability of the dye to interact with the CyD using its phenoxide donor moiety. The largest hypsochromic shifts were obtained in chloroform (66.0 nm) and dichloromethane (67.5 nm) with dye after addition of methyl-beta-CyD. In these specific situations, solvents display weak basic and acid properties, that enhanced CyD-dye interactions to such an extent that association complexes formed through hydrogen bonding could be detected (K11) values of 24.8 +/- 4.9 dm3 mol(-1) in dichloromethane and 66.1 +/- 8.0 dm3 mol(-1) in chloroform).     

The influence of water on the rates of 1,3-dipolar cycloaddition reactions: trigger points for exponential rate increases in water-organic solvent mixtures. Water-super versus water-normal dipolarophiles

The nature of the rate enhancements caused by gradually increasing the mole fraction of water in the solvent (from 0 to 1) for the cycloaddition reactions of pyridazinium-dicyanomethanide 1,3-dipole, 2, with the dipolarophiles ethyl vinyl ketone (a water-super dipolarophile) and methyl acrylate (a water-normal dipolarophile) in the organic solvents acetonitrile, acetone, methanol, ethanol, and tert-butyl alcohol at 37 degrees C are explored. In each case as the mole fraction of water surpassed ca. 0.9, exponential rate enhancements were triggered. When methanol replaced water, the rate enhancements were smaller, and no triggering effect was observed. The dramatic rate enhancement triggered for the water-super dipolarophile was significantly reduced as the temperature was raised in the range 29-64 degrees C. The results suggest that a dominant hydrogen-bonding effect operates in water-induced rate enhancements of 1,3-dipolar cycloaddition reactions with water-super dipolarophiles as well as the hydrophobic effect. The hydrogen-bonding effect involves secondary bridging hydrogen bonding from the primary water-solvation shell of the transition state and the growth of structured water clusters. Theoretical calculations strongly support these conclusions.     

Interactions between hydrophobic and ionic solutes in aqueous guanidinium chloride and urea solutions: lessons for protein denaturation mechanism

In order to clarify the mechanism of denaturant-induced unfolding of proteins we have calculated the interactions between hydrophobic and ionic species in aqueous guanidinium chloride and urea solutions using molecular dynamics simulations. Hydrophobic association is not significantly changed in urea or guanidinium chloride solutions. The strength of interaction between ion pairs is greatly diminished by the guanidinium ion. Although the changes in electrostatic interactions in urea are small, examination of structures, using appropriate pair functions, of urea and water around the solutes show strong hydrogen bonding between urea's carbonyl oxygen and the positively charged solute. Our results strongly suggest protein denaturation occurs by the direct interaction model according to which the most commonly used denaturants unfold proteins by altering electrostatic interactions either by solvating the charged residues or by engaging in hydrogen bonds with the protein backbone. To further validate the direct interaction model we show that, in urea and guanidinium chloride solutions, unfolding of an unusually stable helix (H1) from mouse PrPC (residues 144-153) occurs by hydrogen bonding of denaturants to charged side chains and backbone carbonyl groups.