Photo-switchable spin-crossover iron(III) compound based on intermolecular interactions

Iron(III) spin-crossover compounds, [Fe(qnal)₂]CF₃SO₃·MeOH (1·MeOH) and [Fe(qnal)₂]CF₃SO₃·acetone (1·acetone) were prepared and their spin transition properties were characterized by magnetic susceptibility measurement, Mössbauer spectroscopy and single crystal analysis. Two iron(III) compounds exhibited abrupt spin transition with thermal hysteresis loop (T _1/2?? = 115 K and T _1/2?? = 104 K for 1·MeOH, and T _1/2?? = 133 K and T _1/2?? = 130 K for 1·acetone). Single crystal analysis revealed both of the structures in high-spin (HS) and low-spin (LS) states for 1·acetone. The difference of bond length between the HS and LS states for 1·acetone was ~0.10 Å, which was corresponding to that of typical iron(III) SCO compounds. Specially, it showed strong intermolecular interactions by ???C?? stacking formed between the neighbor complexes leading to 2-D sheet. Both 1·MeOH and 1·acetone exhibited LIESST effect when it was illuminated at 1000 nm. We also confirmed that the introduction of strong intermolecular interactions, such as ???C?? stacking, can play an important role in LIESST effect.     

Lead(II) complexes of proline

Three new proline (pro) lead(II) complexes were synthesized and characterized by elemental analyses, IR, ¹H NMR, and ¹³C NMR spectroscopy. Single crystal X-ray structural analysis of [Pb(pro)(H₂O)] _n shows the complex to be a novel 1D chain polymer as a result of water bridging. Coordination number of Pb(II) is six, with a ‘stereo-chemically active’ electron lone pair, and the coordination sphere is hemidirected. The chains interact with each other via weak Pb?···?O intractions and hydrogen bonding to create a 2D framework.     

Characterization of <Emphasis Type="Italic">σ</Emphasis>-hole interactions in 1:1 and 1:2 complexes of YOF<Subscript>2</Subscript>X (X = F,Cl, Br,I; Y = P,As) with ammonia: competition between halogen and pnicogen bonds

Ab initio calculations at the MP2/aug-cc-pVTZ level of theory are performed to examine 1:1 and 1:2 complexes of YOF₂X (X = F, Cl, Br, I; Y = P, As) with ammonia. The YOF₂X:NH₃ complexes are formed through the interaction of the lone pair of the ammonia with the σ-hole region associated with the X or Y atom of YOF₂X molecule. The calculated interaction energies of halogen-bonded complexes are between ?1.06 kcal/mol in the POF₃···NH₃ and ?6.21 kcal/mol in the AsOF₂I···NH₃ one. For a given Y atom, the largest pnicogen bond interaction energy is found for the YOF₃, while the smallest for the YOF₂I one. Almost a strong linear relationship is evident between the interaction energies and the magnitudes of the positive electrostatic potentials on the X and Y atoms. The results indicate that the interaction energies of halogen and pnicogen bonds in the ternary H₃N:YOF₂X:NH₃ systems are less negative relative to the respective binary systems. The interaction energy of Y···N bond is decreased by 1–22 %, whereas that of X···N bond by about 5–61 %. That is, both Y···N and X···N interactions exhibit anticooperativity or diminutive effects in the ternary complexes.     

A computational study of 1:1 and 1:2 complexes of nitryl halides (O2NX) with HCN and HNC

Quantum calculations at the MP2/cc-pVTZ have been used to examine 1:1 and 1:2 complexes between O₂NX (X = Cl, Br) with HCN and HNC moieties. The interaction of the lone pair of the HCN(HNC) with the σ-hole and π-hole of O₂NX molecules and hydrogen bonding between lone pairs of X and O of O₂NX with H of HCN and HNC have been considered in 1:1 complexes. The 1:1 complexes can easily be differentiated using the stretching frequency of the N–X bond. Thus, those complexes with σ-hole and H···O₂NX interactions show a blue shift of the N-X bond stretching while a red shift is observed in the complexes along the π-hole and H···XNO₂ interactions. In the 1:2 complexes, the cooperative and diminutive energetic effects have been analyzed using the many-body interaction energies. The nature of the interactions has been characterized with the Atoms in Molecules (AIM) and Natural Bond Orbital (NBO) methodologies. Stabilization energies of 1:1 and 1:2 complexes including the variation of the zero-point vibrational energy (ΔZPVE) are in the range 3–9 kJ mol^?1 and 21–40 kJ mol^?1, respectively.     

Hydrogen‐bonded structures of the 1:1 and 1:2 compounds of chloranilic acid with pyrrolidin‐2‐one and piperidin‐2‐one

In the four compounds of chloranilic acid (2,5‐dichloro‐3,6‐dihydroxycyclohexa‐2,5‐diene‐1,4‐dione) with pyrrolidin‐2‐one and piperidin‐2‐one, namely, chloranilic acid–pyrrolidin‐2‐one (1/1), C₆H₂Cl₂O₄·C₄H₇NO, (I), chloranilic acid–pyrrolidin‐2‐one (1/2), C₆H₂Cl₂O₄·2C₄H₇NO, (II), chloranilic acid–piperidin‐2‐one (1/1), C₆H₂Cl₂O₄·C₅H₉NO, (III), and chloranilic acid–piperidin‐2‐one (1/2), C₆H₂Cl₂O₄·2C₅H₉NO, (IV), the shortest interactions between the two components are O—H...O hydrogen bonds, which act as the primary intermolecular interaction in the crystal structures. In (II), (III) and (IV), the chloranilic acid molecules lie about inversion centres. For (III), this necessitates the presence of two independent acid molecules. In (I), there are two formula units in the asymmetric unit. The O...O distances are 2.4728 (11) and 2.4978 (11) Å in (I), 2.5845 (11) Å in (II), 2.6223 (11) and 2.5909 (10) Å in (III), and 2.4484 (10) Å in (IV). In the hydrogen bond of (IV), the H atom is disordered over two positions with site occupancies of 0.44 (3) and 0.56 (3). This indicates that proton transfer between the acid and base has partly taken place to form ion pairs. In (I) and (II), N—H...O hydrogen bonds, the secondary intermolecular interactions, connect the pyrrolidin‐2‐one molecules into a dimer, while in (III) and (IV) these hydrogen bonds link the acid and base to afford three‐ and two‐dimensional hydrogen‐bonded networks, respectively.     

Sur un nouveau Complexe entre l'oxyfluorure d'antimoine et l'oxalate. Structure cristalline de (NH4)4H2(C2O4)3(SbOF) 2 · H2O

On a New Complex of Antimony Oxide Fluoride and Oxalate. Crystal Structure of (NH₄)₄H₂(C₂O₄)₃(SbOF) ₂ · H₂O The crystal structure of (NH₄)₄H₂(C₂O₄)₃(SbOF) ₂ · H₂O has been fixed by X-ray diffraction on single crystal (R = 0.025 for 2124 planes). The antimony atom is complexed by the oxalate anions which are bidendate chelates. Antimony coordination is seven (five oxygen atoms, one fluorine atom, and the lone pair E). Antimony environment is a pentagonal bipyramid, one of the axial positions is occupied by the lone pair, the other one by the fluorine atom.     

Reduction Reaction of the Copper(II) Complex Bearing 1,3-Di(pyridine-2-carboxaldimino)propane (pitn) by Decamethylferrocene in Acetonitrile

The reduction reaction of the Cu(II)–pitn complex (pitn = 1,3-di(pyridine-2-carboxaldimino)propane) by decamethylferrocene [Fe(Cp*)₂] was examined in acetonitrile. The observed pseudo-first-order rate constants exhibited saturation kinetics with increasing excess amount of [Fe(Cp*)₂]. Detailed analyses revealed that the reaction is controlled by a structural change prior to the electron transfer step, rather than a conventional bimolecular electron transfer process preceded by ion pair (encounter complex) formation. The rate constant for the structural change was estimated to be 275 ± 13 s^?1 at 298 K (?H* = 33.3 ± 1.0 kJ·mol^?1, ?S* = 86 ± 5 J·mol^?1·K^?1), which is the fastest among gated reactions involving CuN₄ complexes. It was confirmed by EPR measurement and Conflex calculations that the dihedral angle between the two N–N planes is significantly large (40°) in solution whereas it is merely 17.14° in the crystal.     

Supramolecular assembly and DNA cleavage activity of a nickel(II) complex

A new mononuclear nickel(II) complex, [NiL₂] (HL = ((2-(5-fluoro-2-hydroxybenzyl)(2-(imidazole-2-yl)ethyl))imine), has been synthesized and characterized by IR, UV–vis and X-ray diffraction technique. The X-ray crystal structure of the complex shows that the coordination environment around Ni(II) ion is an approximate octahedron. Each molecule connects with four adjacent neighbors through strong hydrogen bonding interactions (N–H···O, d(N–O) = 2.687 Å and ∠N–H···O = 158.3(1)°), forming a supramolecular network. The interaction of the complex with DNA was monitored using agarose gel electrophoresis. The results show that the complex has DNA cleavage activity. The cyclic voltammogram shows one pair of anodic and cathodic peaks with E_1/2 = ?1.06 V, assigned to the Ni(II)/Ni(I) couple.     

Hydrogen bonded С–H···Y (Y = O,S, Hal) molecular complexes: A natural bond orbital analysis

Hydrogen bonded C–H···Y complexes formed by H₂O, H₂S molecules, hydrogen halides, and halogen-ions with methane, halogen substituted methane as well as with the C₂H₂ and NCH molecules were studied at the MP2/aug-cc-pVDZ level. The structure of NBOs corresponding to lone pair of acceptor Y, n_Y, and vacant anti-σ-bond C–H of proton donor was analyzed and estimates of second order perturbation energy Е⁽²⁾ characterizing donor–acceptor n_Y → σ_C-H^* charge-transfer interaction were obtained. Computational results for complexes of methane and its halogen substituted derivatives show that for each set of analogous structures, the Е_nY→σ*C-H⁽²⁾ energy tends to grow with an increase in the s-component percentage in the lone pair NBO of acceptor Y. Calculations for different C···Y distances show that the equilibrium geometries of complexes lie in the region where the E⁽²⁾ energy is highest and it changes symbatically with the length of the covalent С–H bond when the R(C···Y) distance is varied. The performed analysis allows us to divide the hydrogen bonded complexes into two groups, depending on the pattern of overlapping for NBOs of the hydrogen bridge.     

Crystal structure of germanium(II) dichloride solvated by tetrahydrofuran

The thermally highly unstable tetrahydrofuran solvate of germanium(II) dichloride (GeCl₂ · 2THF) was crystallized, and its crystal structure was determined. It consists of a chain of GeCl₂ units connected by secondary Cl···Ge contacts [3.846(2) Å] in which each Ge atom is coordinated to two molecules of THF. Two weak hydrogen bonds of the C H ··· Cl Ge type in GeCl₂ · 2THF were also detected both with lengths of 2.90(3) Å. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:361–363, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20105     

Disordered crystal structure of 4,7,13,16,21,24-hexaoxa-1-aza-10-azoniabicyclo[8.8.8]hexacosane isocyanurate

X-ray spectral analysis has been applied to study the crystal structure of 4,7,13,16,21,24-hexaoxa-1-aza-10-azoniabicyclo[8.8.8]hexacosane isocyanurate of an unusual composition: [H_1.2(Crypt-222)]^1,2+ · [H_0.8(Crypt-222)]^0.8+·2(C₃H₂N₃O₃)^? (I). The structure of I (space group C2/c, a = 37.840 Å, b = 13.760 Å, c = 19.456 Å, β = 91.21°, Z = 8) was solved by a direct method and refined by the full-matrix least-squares technique in the anysotropic approximation up to R = 0.119 over 6500 independent reflections measured (autodiffractometer CAD-4, λ-MoK _α). The structure of I has two independent cations of 2.2.2-cryptand linked by the proximate pseudo-center of inversion and they have a rare conformation of exo-exo type, in which H atom or lone pair at both their node atoms N are directed outward their cavity. In the structure of I, all H atoms at N atoms of cations and half of H atoms of isocyanurate anions are disordered and have the populations of positions 0.7, 0.5, and 0.3. There is a developed system of interionic hydrogen bonds in the crystal structure of I.     

The structure of the complex of cellulose I with ethylenediamine by X-ray crystallography and cross-polarization/magic angle spinning 13C nuclear magnetic resonance

X-ray crystallographic and cross-polarization/magic angle spinning ¹³C nuclear magnetic resonance techniques have been used to study an ethylenediamine (EDA)-cellulose I complex, a transient structure in the cellulose I to cellulose III_I conversion. The crystal structure (space group P2 ₁ ; a = 4.546 Å, b = 11.330 Å, c = 10.368 Å and γ = 94.017°) corresponds to a one-chain unit cell with one glucosyl residue in the asymmetric unit, a gt conformation for the hydroxymethyl group, and one EDA molecule per glucosyl residue. Unusually, there are no O–H···O hydrogen bonds between the cellulose chains; the chains are arranged in hydrophobic stacks, stabilized by hydrogen bonds to the amine groups of bridging EDA molecules. This new structure is an example of a complex in which the cellulose chains are isolated from each other, and provides a number of insights into the structural pathway followed during the conversion of cellulose I to cellulose III_I through EDA treatment.     

Molecular conformation of the racemic indan derivative (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxamide

This paper presents the structural characterization of the indan derivative (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxamide, which was unambiguously determined by X-ray diffraction (XRD) to be a racemate (R/S: 50/50) crystallizing in an achiral crystal structure (P2₁/c, a = 9.3180(1) Å, b = 7.9070(2) Å, c = 19.7550(4) Å, β = 103.250(1)°, V = 1416.75(5) Å³ and Z = 4). The diastereomers are related by the inversion symmetry and linked by H bond forming a dimer. The crystal packing is stabilized by hydrogen bonds, including the classical one responsible for the formation of centrosymmetric dimers, and non-classical ones involving C–H···O and C–H···π-aryl interactions. The intra and intermolecular geometry of the title compound is compared to the (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxylic acid one, which also present an achiral crystal structure from racemates (R/S: 50/50). The two indan derivatives crystallize in a very similar unit cell.     

Molecular and crystal structure of 15-acetylsongorine and songoramine isolated from <Emphasis Type="Italic">Aconitum szechenyianum</Emphasis> Gay

Two napelline skeletal diterpenoid alkaloids 15-acetylsongorine, C₂₄H₃₃NO₄ I, and songoramine, C₂₂H₂₉NO₃ II, were first isolated from the roots of Aconitum Szechenyianum Gay. The crystal structures were determined by X-ray single-crystal diffraction analysis. The crystal I is the triclinic system with space group P1 having unit cell parameters of a = 9.360(8) Å, b = 11.593(9) Å, c = 11.830(16) Å, α = 113.223(15)°, β = 105.950(16)°, γ = 101.296(12)°, and Z = 2. Hydrogen bonds O–H···O and O–H···N joint the molecules into dimer. The crystal II belongs to the orthorhombic system with space group P2₁2₁2₁ having unit cell parameters of a = 8.950(2) Å, b = 13.272(3) Å, c = 15.454(4) Å and Z = 4. The O–H···O hydrogen bonding interaction links the molecule into linear chains. The distortion of rings of compound I and II were evaluated by calculation of the Cremer and Pople puckering parameters. The presence of the C–O–C bond in the compound II results in the changes of ring conformations compared with that of the compound I.     

Crystal structure and thermal behavior of a chromium-piperazinium phosphate

(C₄N₂H₁₂)CrO(H_1.5PO₄)₂·H₂O has been synthesized hydrothermally using piperazine as organic template. Its crystal structure was solved ab initio using synchrotron powder X-ray diffraction data [monoclinic, a = 16.9649(4) Å, b = 9.8609(2) Å, c = 7.14375(14) Å, and β = 94.896(3)°, space group P2₁/a, Z = 4]. 1D structure is composed by isolated infinite anionic chains [CrO(H_1.5PO₄)₂]_n (vertex-sharing {CrO₆} octahedra joined by phosphate moieties). Their 2D plate-like morphology is propitiated by a very strong inter-chain interaction (P–O···H···O–P symmetric hydrogen bonds). KAS isoconversional method was applied to determine the activation energy for both thermal and thermo-oxidative decomposition of (C₄N₂H₁₂)CrO(H_1.5PO₄)₂·H₂O.     

The crystal structure of carbamoyl fluoride,NH<Subscript>2</Subscript>COF

Although first synthesized in 1940, the X-ray crystal structure of carbamoyl fluoride, NH₂COF, has until now remained unknown. [1] NH₂COF crystallizes in the orthorhombic space group Ibam, is planar, and exhibits a short C-N bond length, 1.3168(13) Å, implying a significant degree of donation from the nitrogen lone pair. The structure features one molecule in the asymmetric unit and eight molecules in the unit cell. There are four molecules in two planar layers that are connected by a network of NH·O hydrogen bonds with N·O distances of 2.987(2) Å and 2.945(2) Å. The compound was also studied by quantum chemical calculations at both the ab initio (MP2) and density functional theory (B3LYP) level.     

The role of Ag···O and Ag···Ag interactions in silver(I) supramolecular frameworks constructed from benzene multicarboxylate and nitrogen ligands

Using a hydrothermal synthesis method, two Ag(I) coordination polymers, {[Ag₂(bbbm)₂]·(Hbtc)} _n (1) and {[Ag₂(mbim)₂(Hsip)]·H₂O} _n (2) (bbbm = N,N’-(1,4-butanediyl)bis-(benzimidazole), mbim = N,N′-(1,1-methyl)-bis-(imidazole), H₃btc = 1,3,5-benzenetricarboxylic acid, H₃sip = 5-sulfoisophthalic acid) were synthesized and characterized by physicochemical and spectroscopic methods and single crystal diffraction. The complex 1 features a 2D supramolecular network formed by left- and right-handed cationic [Ag(bbbm)] _n helical chains and Hbtc ligands with the link of Ag···O interactions, displaying an unusual trinodal (3,3,4)-connected 3,3,4L12 topology net. The complex 2 has a left-handed and a symmetric right-handed double-stranded [Ag₂(mbim)₂(Hsip)] _n helical chains. The adjacent [Ag₂(mbim)₂(Hsip)] _n helical chains are further linked by Hsip ligands through the combination of weak Ag···O coordinative interactions and ligand-supported Ag···Ag interactions to generate a 3D supramolecular framework, exhibiting a new type of topology of a trinodal (4,5,5)-connected net. The solid-state fluorescence properties of the compounds 1 and 2 were investigated.     

Crystallographic and conformational analysis of (<Emphasis Type="Italic">E</Emphasis>)-2-isopropyl-4-(<Emphasis Type="Italic">p</Emphasis>-tolyldiazenyl)phenol

The molecular and crystal structures of the title compound, C₁₆H₁₈N₂O, were characterized and determined by single crystal X-ray diffraction method in addition to spectroscopic means such as IR, UV–VIS and ¹H NMR. The compound crystallizes in orthorhombic space group P bca, with a = 9.3350(5) Å, b = 23.4878(13) Å, c = 26.5871(12) Å, Z = 16, D _calc. = 1.1591(1) g/cm³, μ (MoK_α) = 0.073 mm^?1. Monomers of the compound in the crystal structure are linked into C(7) and C(8) chains generated by translation along the [1 0 0] direction with the aid of O–H···N type H-bonds which serve to the stabilization of periodic organization of the molecules beside major and minor component in the disordered azo fragment. In order to describe conformational flexibility and the crystal packing effects on the molecular conformation, potential barriers regarding the rotation along both Ar–N bonds were calculated by varying the related torsional degrees of freedom in every 10° ranging from ?180° to +180° via quantum chemical calculations at DFT/B3LYP level.     

Hydrogen bonding in two solid phases of phenazine–chloranilic acid (1/1) determined at 170 and 93 K

The crystal structures in two solid phases, i.e. phase II stable between 146 and 253 K and phase IV below 136 K, of the title compound [phenazine–chloranilic acid (1/1), C₁₂H₈N₂·C₆H₂Cl₂O₄, in phase II, and phenazinium hydrogen chloranilate, C₁₂H₉N₂⁺·C₆HCl₂O₄⁻, in phase IV], have been determined. Both phases crystallize in P2₁, and each structure was refined as an inversion twin. In phase II, the phenazine and chloranilic acid mol­ecules are arranged alternately through two kinds of O—H⋯N hydrogen bonds. In phase IV, salt formation occurs by donation of one H atom from the chloranilic acid molecule to the phenazine mol­ecule; the resulting monocation and monoanion are linked by N—H⋯O and O—H⋯N hydrogen bonds.     

Synthesis and structural characterization of Palladium(II) complex bearing <Emphasis Type="Italic">N</Emphasis>-Heterocyclic Carbene

Trans-Bis[1,3-bis(2,4-dimethylphenylimidazolidin-2-ylidene)]dichloropalladium(II), 4, was prepared from 1,3-bis(2,4-dimetilphenyl)imidazoliniumchloride. The crystal and molecular structure of 4 have been determined by single crystal X-ray diffraction. The title compound, C₃₈H₄₄N₄PdCl₂, crystalizes in the monoclinic space group P 21/n with a = 13.8713(9) Å, b = 12.1365(6) Å, c = 21.5499(15) Å. The Pd atom has a slightly distorted square planar coordination geometry. The molecules of the title compound are linked by C–H···Cl weak hydrogen bonds into two-dimensional sheets parallel to the (001) plane. In addition, the title compound was characterized by elemental analyses and NMR spectroscopy.