Characterization,selenylation, and antineoplastic effects on HepG2 cells in vitro and in vivo of an arabinofuranan from the fruits of Akebia quinata

Akebia quinata is a traditional medicinal plant distributed in East Asia and its fruits are applicated in food and pharmaceutical fields. Herein, a novel polysaccharide (AQP70-2A) with a molecular weight of 1.49 × 10⁴ Da was isolated from the fruits of A. quinata. Results of the chemical and spectroscopic analysis indicated that AQP70-2A was an arabinofuranan with a backbone mainly consisting of → 5)-α-l-Araf-(1→, →3,5)-α-l-Araf-(1→, and → 2,3,5)-α-l-Araf-(1→, and it also contained two types of branch chains. At the cellular level, AQP70-2A did not show significant antitumor properties, while selenylation significantly made the inhibitory effect of this natural macromolecule on HepG2 cells to be increased. Furthermore, the zebrafish xenograft model confirmed that selenized polysaccharide Se-AQP70-2A effectively blocked hepatocellular carcinoma cells invasion and metastasis. Meanwhile, the inhibition of Se-AQP70-2A on development of intersegmental vessels revealed its antiangiogenic activity.     

In silico analysis of nonsynonymous single nucleotide polymorphisms of the human adiponectin receptor 2 (ADIPOR2) gene

Polymorphisms of the ADIPOR2 gene are frequently linked to a higher risk of developing diseases including obesity, type 2 diabetes and cardiovascular diseases. Though mutations of the ADIPOR2 gene are detrimental, there is a lack of comprehensive in silico analyses of the functional and structural impacts at the protein level. Considering the involvement of ADIPOR2 in glucose uptake and fatty acid oxidation, an in silico functional analysis was conducted to explore the possible association between genetic mutations and phenotypic variations. A genomic analysis of 82 nonsynonymous SNPs in ADIPOR2 was initiated using SIFT followed by the SNAP2, nsSNPAnalyzer, PolyPhen-2, SNPs&GO, FATHMM and PROVEAN servers. A total of 10 mutations (R126W, L160Q, L195P, F201S, L235R, L235P, L256R, Y328H, E334K and Q349H) were predicted to have deleterious effects on the ADIPOR2 protein and were therefore selected for further analysis. Theoretical models of the variants were generated by comparative modeling via MODELLER 9.16. A protein structural analysis of these amino acid variants was performed using SNPeffect, I-Mutant, ConSurf, Swiss-PDB Viewer and NetSurfP to explore their solvent accessibility, molecular dynamics and energy minimization calculations. In addition, FTSite was used to predict the ligand binding sites, while NetGlycate, NetPhos2.0, UbPerd and SUMOplot were used to predict post-translational modification sites. All of the variants showed increased free energy, though F201S exhibited the highest energy increase. The root mean square deviation values of the modeled mutants strongly indicated likely pathogenicity. Remarkably, three binding sites were detected on ADIPOR2, and two mutations at positions 328 and 201 were found in the first and second binding pockets, respectively. Interestingly, no mutations were found at the post-translational modification sites. These genetic variants can provide a better understanding of the wide range of disease susceptibility associated with ADIPOR2 and aid the development of new molecular diagnostic markers for these diseases. The findings may also facilitate the development of novel therapeutic elements for associated diseases.     

Identification of a genetic locus on chromosome 4q34-35 for type 2 diabetes with overweight

The incidence of type 2 diabetes is rising rapidly because of an increase in the incidence of being overweight and obesity. Identification of genetic determinants for complex diseases, such as type 2 diabetes, may provide insight into disease pathogenesis. The aim of the study was to investigate the shared genetic factors that predispose individuals to being overweight and developing type 2 diabetes. We conducted genome-wide linkage analyses for type 2 diabetes in 386 affected individuals (269 sibpairs) from 171 Korean families and association analyses with single-nucleotide polymorphisms of candidate genes within linkage regions to identify genetic variants that predispose individuals to being overweight and developing type 2 diabetes. Through fine-mapping analysis of chromosome 4q34-35, we detected a locus potentially linked (nonparametric linkage 2.81, logarithm of odds 2.27, P=6 × 10⁻⁴) to type 2 diabetes in overweight or obese individuals (body mass index, BMI⩾23 kg m⁻²). Multiple regression analysis with type 2 diabetes-related phenotypes revealed a significant association (false discovery rate (FDR) P=0.006 for rs13144140; FDR P=0.002 for rs6830266) between GPM6A (rs13144140) and BMI and waist–hip ratio, and between NEIL3 (rs6830266) and insulin level from 1314 normal individuals. Our systematic search of genome-wide linkage and association studies, demonstrate that a linkage peak for type 2 diabetes on chromosome 4q34-35 contains two type 2 diabetes-related genes, GPM6A and NEIL3.     

Glycation sites of human plasma proteins are affected to different extents by hyperglycemic conditions in type 2 diabetes mellitus

Glucose can modify proteins in human blood, forming early glycation products (e.g., Amadori compounds), which can slowly degrade to advanced glycation endproducts (AGEs). AGEs contribute significantly to complications of diabetes mellitus and, thus, represent markers of advanced disease stages. They are, however, currently unsuitable for early diagnosis and therapeutic monitoring. Here, we report sensitive strategies to identify and relatively quantify protein glycation sites in human plasma samples obtained from type 2 diabetes mellitus (T2DM) patients and age-matched nondiabetic individuals using a bottom-up approach. Specifically, Amadori peptides were enriched from tryptic digests by boronic acid affinity chromatography, separated by reversed-phase chromatography, and analyzed on-line by high-resolution mass spectrometry. Among the 52 Amadori peptides studied here were 20 peptides resembling 19 glycation sites in six human proteins detected at statistically significantly higher levels in T2DM than in the normoglycemic controls. Four positions appeared to be unique for T2DM within the detection limit. All 19 glycation sites represent promising new biomarker candidates for early diagnosis of T2DM and adequate therapeutic control, as they may indicate early metabolic changes preceding T2DM. Graphical Abstract

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N-Glycosylation Profiling of Human Blood in Type 2 Diabetes by Capillary Electrophoresis: A Preliminary Study

Currently, diagnosing type 2 diabetes (T2D) is a great challenge. Thus, there is a need to find rapid, simple, and reliable analytical methods that can detect the disease at an early stage. The aim of this work was to shed light on the importance of sample collection options, sample preparation conditions, and the applied capillary electrophoresis bioanalytical technique, for a high-resolution determination of the N-glycan profile in human blood samples of patients with type 2 diabetes (T2D). To achieve the profile information of these complex oligosaccharides, linked by asparagine to hIgG in the blood, the glycoproteins of the samples needed to be cleaved, labelled, and purified with sufficient yield and selectivity. The resulting samples were analyzed by capillary electrophoresis, with laser-induced fluorescence detection. After separation parameter optimization, the capillary electrophoresis technique was implemented for efficient N-glycan profiling of whole blood samples from the diabetic patients. Our results revealed that there were subtle differences between the N-glycan profiles of the diabetic and control samples; in particular, two N-glycan structures were identified as potential glycobiomarkers that could reveal significant changes between the untreated/treated type 2 diabetic and control samples. By analyzing the resulting oligosaccharide profiles, clinically relevant information was obtained, revealing the differences between the untreated and HMG-CoA reductase-inhibitor-treated diabetic patients on changes in the N-glycan profile in the blood. In addition, the information from specific IgG N-glycosylation profiles in T2D could shed light on underlying inflammatory pathophysiological processes and lead to drug targets.     

Structural studies in the BaO-B2O3-TiO2 system by XAS and B-NMR

The structure of barium-titanium-metaborate xBaO-xB₂O₃-yTiO₂ (y=0%, 4%, 8%, 16% and x=50-y/2) amorphous and crystallized powders, obtained using a polymeric precursor method, was investigated by Ti and B K-edge X-ray absorption spectroscopy (XAS) and ¹¹B-NMR high-resolution techniques. XANES study of amorphous samples shows that Ti⁴⁺ ions exist as ^[4]Ti species associated to ^[6]Ti and ^[5]Ti species in a practically equivalent amount. After crystallization, titanium environment is predominately composed by ^[6]Ti species. According to XANES results obtained at the B K-edge, the fraction of boron in tetrahedral sites (^[4]B) reduces as the amount of TiO₂ is increased from x=0% to 4%, with a consequent increase of boron in trigonal sites (^[3]B). By a combination of ¹¹B-NMR spin-echo and triple quantum magic angle spinning (3Q-MAS) techniques, the detailed borate speciation was determined as consisting in ^[4]B and two kind of trigonal sites, ^[3]B_A and ^[3]B_B, corresponding, respectively, to borates sharing three and two O atoms with other boron units. NMR results reveal not only the reduction in boron coordination also seen by XANES but also the simultaneous reduction in the condensation degree of trigonal units, when the Ti content is increased in the glass. In crystallized samples, β-BaB₂O₄ and BaTi(BO₃)₂ phases were identified and quantified by ¹¹B-NMR.     

Ribosomal protein mutations in Korean patients with Diamond-Blackfan anemia

Diamond-Blackfan anemia (DBA) is a congenital bone marrow failure syndrome characterized by hypoproliferative anemia, associated physical malformations and a predisposition to cancer. DBA has been associated with mutations and deletions in the large and small ribosomal protein genes, and genetic aberrations have been detected in ∼50–60% of patients. In this study, nine Korean DBA patients were screened for mutations in eight known DBA genes (RPS19, RPS24, RPS17, RPS10, RPS26, RPL35A, RPL5 and RPL11) using the direct sequencing method. Mutations in RPS19, RPS26 and RPS17 were detected in four, two and one patient, respectively. Among the mutations detected in RPS19, two mutations were novel (c.26T>A, c.357-2A>G). For the mutation-negative cases, array-CGH analysis was performed to identify copy-number variations, and no deletions involving the known DBA gene regions were identified. The relative mRNA expression of RPS19 estimated using real-time quantitative PCR analysis revealed two- to fourfold reductions in RPS19 mRNA expression in three patients with RPS19 mutations, and p53 protein expression analysis by immunohistochemistry showed variable but significant nuclear staining in the DBA patients. In conclusion, heterozygous mutations in the known DBA genes RPS19, RPS26 and RPS17 were detected in seven out of nine Korean DBA patients. Among these patients, RPS19 was the most frequently mutated gene. In addition, decreased RPS19 mRNA expression and p53 overexpression were observed in the Korean DBA patients, which supports the hypothesis that haploinsufficiency and p53 hyperactivation represent a central pathway underlying the pathogenesis of DBA.     

A re-investigation of the crystal structure and luminescence of BaCa2MgSi2O8:Eu

Barium calcium magnesium silicate (BaCa₂MgSi₂O₈), a compound whose space group was obtained via X-ray diffraction data, was re-investigated using neutron diffraction techniques. A combined powder X-ray and neutron Rietveld method revealed that BaCa₂MgSi₂O₈ crystallizes in the trigonal space group P3? (Z=1, a=5.42708(5) Å, c=6.79455(7) Å, V=173.310(4) Å³; R_p/R_wp=5.52%/7.63%), instead of the previously believed space group P3?m1. The difference in the two structures arises from the displacement of the O2 atom. Blue emission from Ba_0.98Eu_0.02Ca₂MgSi₂O₈ under 325-nm excitation is ascribed to the 4f⁶5d¹→4f⁷ transitions of Eu²⁺ ions at Ba sites and Ca sites. Site assignment of Eu²⁺ ions in the titled compound was performed by analysis of emission spectra at temperatures in the range of 4.2-300 K.     

Synthesis and Antiproliferative Activity of Phosphorus Substituted 4-Cyanooxazolines, 2-Aminocyanooxazolines, 2-Iminocyanooxazolidines and 2-Aminocyanothiazolines by Rearrangement of Cyanoaziridines

Several phosphorus-substituted N-acylated cyanoaziridines 2 and N-carbamoylated cyanoziridines 5 were prepared in good to high yields. N-Acylated cyanoaziridines 2 were used, after ring expansion, in an efficient synthesis of oxazoline derivative 3a and in a completely regio-controlled reaction in the presence of NaI. Conversely, N-carbamoyl cyanoaziridines 5 reacted with NaI to obtain a regioisomeric mixture of 2-aminocyanooxazolines 7. Mild acidic conditions can be used for the isomerization of N-thiocarbamoyl cyanoaziridine 6a into a 2-aminocyanothiazoline derivative 8a by using BF₃·OEt₂ as a Lewis acid. Likewise, a one pot reaction of NH-cyanoaziridines 1 with isocyanates obtained 2-iminocyanooxazolidines 9 regioselectively. This synthetic methodology involves the addition of isocyanates to starting cyanoaziridines to obtain N-carbamoyl cyanoaziridines 5, which after the ring opening, reacts with a second equivalent of isocyanate to give the final 2-imino cyanooxazolidines 9. In addition, the cytotoxic effect on the cell lines derived from human lung adenocarcinoma (A549) was also screened. 2-Iminooxazolidines 9 exhibited moderate activity against the A549 cell line in vitro. Furthermore, a selectivity towards cancer cells (A549) over non-malignant cells (MCR-5) was detected.     

DSC study of the phase transitions in [Ni(D2O)6](ClO4)2 and [Ni(H2O)6](ClO4)2

DSC measurements were carried out for [Ni(H₂O)₆](ClO₄)₂ (sampleH) and [Ni(D₂O)₆](ClO₄)₂ (sampleD) in the temperature range 300–380 K. For both compounds two anomalies on the DSC curves were detected. The results for sampleH are compared to those previously obtained using adiabatic calorimetry method. For both compounds studied in this work the high-temperature transition appears at the same temperature while the low-temperature one is shifted towards higher temperatures in sampleD. Disorder connected with H₂O or D₂O groups is suggested in the intermediate phase between the low- and high-temperature transitions.     

Crystal Structure of Pseudorhombohedral InFe1−xTixO3+x/2 (x=2/3)

The structure of pseudorhombohedral-type InFe_1−xTi_xO_3−x/2 (x=2/3) was refined by Rietveld profile fitting. The crystal is a commensurate member of a series in a solution range on InFeO₃-In₂Ti₂O₇ including incommensurate structures. The structure with the unit cell of a=5.9188(1), b=10.1112(2), and c=6.3896(1) Å, β=108.018(2)°, and a space group P2₁/a is the alternate stacking of an edge-shared InO₆ octahedral layer and an Fe/Ti-O plane along c^*. Metal sites on the Fe/Ti-O plane are surrounded by four oxygen atoms on the Fe/Ti-O plane and two axial ones. Electric conductivities of the order 10⁻⁴ S/cm were observed for the samples at 1000 K, while the oxide ion transport number is almost zero as no electromotive force was detected by an oxygen concentration cell.     

Highly efficient one-pot C-, N- and O-acylation of indolin-2-one analogs

A highly efficient one-pot multiple acylation at chemically non-equivalent sites on indolin-2-one and related motifs using 4-(N,N-dimethylamino)pyridine as a catalyst is described. This procedure gives extremely facile entry to highly desired 3-acyl-2-hydroxy-indole synthons among other derivatives.     

Application of 2-(2-chloroaroyl)methyleneimidazolidines in domino and multicomponent reaction: new entries to imidazo[1,2-a]pyridines and benzo[b]imidazo[1,2,3-ij][1,8]naphthyridines

A new strategy for the synthesis of tetrahydroimidazo[1,2-a]pyridines and unusual tetrahydrobenzo[b]imidazo[1,2,3-ij][1,8]naphthyridines has been successfully developed by cascade reactions including Knoevenagel condensation, aza-ene reaction, imine-enamine tautomerization, cyclocondensation/oxidation, and intramolecular S_NAr of precursors 2-(2-chloroaroyl)methyleneimidazolidines as new heterocyclic ketene aminals (HKA), which represent a class of polyfunctional scaffolds with four active reaction sites with aromatic aldehydes and malononitrile or ethyl 2-cyanoacetate under mild conditions. In this domino reaction, nine different active sites are involved, and two C-C bonds, two C-N bonds, and two new rings are constructed with all reactants efficiently utilized in the chemical transformation.     

Structural and Magnetic Chemistry of La2Sr2BMnO8 (B=Mg, Zn)

Polycrystalline samples of the layered perovskites La₂Sr₂MgMnO₈ and La₂Sr₂ZnMnO₈ have been studied by X-ray and neutron powder diffraction, electron diffraction and magnetometry. X-ray and neutron powder diffraction indicate that the average structure is that of K₂NiF₄, with disordering of Mn and (Zn, Mg) cations over the octahedral sites. Electron diffraction data indicate that cation ordering is present over these sites in the xy planes, with the xy ordered planes being stacked in a disordered manner along z. No long-range magnetic ordering is observed in the temperature range 5≤T (K)≤300.     

Magnetic and Mössbauer Study of the Novel FeIn2S2Se2 Layered Compound

The magnetic properties of the new polymorphic FeIn₂S₂Se₂ compound are presented. The system crystallizes in the α-FeGa₂S₄ structure at low temperatures, and undergoes a transition to a MgAl₂S₄-type structure at T>850°C. For this high-temperature phase, low-field magnetization data show a peak at T₁=12.5(5) K, below which magnetic irreversibility is observed. High-temperature susceptibility fits indicate the presence of antiferromagnetic interactions with a high degree of frustration. The effective magnetic moment μ_eff=4.54(3) μ_B agrees with the expected 3d⁶ (S=2) configuration for Fe²⁺. Mössbauer spectroscopy showed that Fe²⁺ ions are distributed in tetrahedral (A) and octahedral (B) sites with a B:A≈1 ratio. The ac susceptibility data were analyzed according to conventional power law dynamics, giving a freezing temperature T_g=12.5(2) K and critical exponent zν=6.5±1, in agreement with Monte Carlo simulations for 3D short-range Ising spin-glass systems.     

Structural refinement of delithiated LiVO2 by neutron diffraction

Lithium has been extracted from the layered compound LiVO₂ by chemical oxidation with bromine. Previous X-ray data have shown that in Li_1−xVO₂ lithium extraction beyond x ≈ 0.33 is accompanied by migration of one-third of the vanadium ions into the lithium-deficient layer to stabilize the structure; little information about the location of the lithium ions could be gathered from this data. The neutron diffraction data presented in this paper show that at a composition Li_0.22VO₂, determined by atomic absorption spectroscopy, the residual lithium ions are distributed over the octahedral sites of the original lithium layer; the possibility that a small fraction of the lithium ions partially occupy the tetrahedral sites in this layer cannot be discounted. No significant occupation by lithium of the tetrahedral or octahedral vacancies in the vanadium-rich layer could be detected.     

Universal fluorescent multiplex PCR and capillary electrophoresis for evaluation of gene conversion between SMN1 and SMN2 in spinal muscular atrophy

We have developed a capillary electrophoresis (CE) method with universal fluorescent multiplex PCR to simultaneously detect the SMN1 and SMN2 genes in exons 7 and 8. Spinal muscular atrophy (SMA) is a very frequent inherited disease caused by the absence of the SMN1 gene in approximately 94% of patients. Those patients have deletion of the SMN1 gene or gene conversion between SMN1 and SMN2. However, most methods only focus on the analysis of whole gene deletion, and ignore gene conversion. Simultaneous quantification of SMN1 and SMN2 in exons 7 and 8 is a good strategy for estimating SMN1 deletion or SMN1 to SMN2 gene conversion. This study established a CE separation allowing differentiation of all copy ratios of SMN1 to SMN2 in exons 7 and 8. Among 212 detected individuals, there were 23 SMA patients, 45 carriers, and 144 normal subjects. Three individuals had different ratios of SMN1 to SMN2 in two exons, including an SMA patient having two SMN2 copies in exon 7 but one SMN1 copy in exon 8. This method could provide more information about SMN1 deletion or SMN1 to SMN2 gene conversion for SMA genotyping and diagnosis.     

α-Ureidoalkylation of thiosemicarbazide and aminoguanidine

azo[4,5-e][1,2,4]triazin-6-ones, 4,5-bis(3-thiosemicarbazido(guanidinoamino))imidazolidin-2-ones, and 1,3-dialkyl-4-(guanidinoimino)imidazolidin-2-ones by α-ureidoalkylation of thiosemicarbazide or aminoguanidine were found. A novel conglomerate in the series of imidazolidin-2-one derivatives was detected: 4,5-bis(guanidinoamino)-1,3-dimethylimid-azolidin-2-one dihydrochloride dihydrate. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 836–843, May, 2006.     

Uncatalyzed solventless Diels-Alder reaction of 2-amino-3-nitroacrylate: synthesis of new epimeric 2-amino-3-nitro-norbornene- and norbornane-2-carboxylic acids

A highly diastereoselective Diels-Alder reaction between cyclopentadiene and ethyl (Z)-2-N-Boc-amino-3-nitroacrylate in neat conditions affords the ethyl 2-t-butoxycarbonylamino-3-endo-nitro-bicyclo[2.2.1]hept-5-ene-2-exo-carboxylate: a new constrained carbocyclic amino acid. Catalytic hydrogenation of this cycloadduct gave the corresponding reduced norbornane derivative. A preliminary investigation into the chemistry of these two amino acids was performed. In particular, the epimerization to their corresponding 3-exo-nitro compounds by treatment both with acid and base was studied. From this study, valuable information on the endo/exo process at the C-3 carbon atom, as well as on the stability of the different stereomers, was obtained. The stability is closely related to the presence or the absence of the double bond in the ring and to the substitution pattern. Finally, deprotection of the amino acid function has been performed.     

Site Occupancies,Electron–Vibration Interaction and Energy Transfer of CaMgSi2O6: Eu2+, Mn2+ Phosphors for Potential Temperature-Sensing and Anti-counterfeiting Applications

Eu²⁺-, Mn²⁺- and Eu²⁺−Mn²⁺-doped CaMgSi₂O₆ phosphors have been prepared by a high-temperature solid-state reaction. Systematic investigation of the concentration- and temperature-dependent luminescence of Mn²⁺ showed that Mn²⁺ ions occupy two distinct sites in CaMgSi₂O₆. Electron–vibration interaction (EVI) analyses of Mn²⁺ ions revealed Huang–Rhys factors of 4.73 and 2.82 as well as effective phonon energies of 313 and 383 cm⁻¹ for the two sites. Eu²⁺−Mn²⁺ energy transfer is also discussed, and its efficiency is estimated by lifetime and luminescence spectra. The different thermal quenching behaviours of Eu²⁺ and Mn²⁺, the distinct emission colours of Eu²⁺ (blue, band peak at ∼451 nm) and Mn²⁺ (yellow–red range, band peaks at ∼583 and 693 nm) endow the co-doped samples with potential applications in luminescence thermometry and temperature-/excitation wavelength-responsive dual anti-counterfeiting.