Biosynthetic study of amphidinolide W

The biosynthetic origins of amphidinolide W (1) were investigated on the basis of (13)C-NMR data of 13C-enriched samples obtained by feeding experiments with [1-13C], [2-13C], and [1,2-13C2] sodium acetate in cultures of a strain Y-42 of the dinoflagellate Amphidinium sp. These incorporation patterns suggested that 1 was generated from a hexaketide chain, two acetate units, four isolated C1 units from C-2 of acetates, and four branched C1 units from C-2 of acetates. The acetate-incorporation patterns for C-1-C-2-(C-21) and C-8-C-18-(C-23, C-24) of 1 corresponded well to those for C-1-C-2-(C-27) and C-5-C-15-(C-28, C-29) of amphidinolide H (2) isolated from this strain.     

Amphidinolides T2, T3, and T4, new 19-membered macrolides from the dinoflagellate Amphidinium sp. and the biosynthesis of amphidinolide T1.

Three new 19-membered macrolides, amphidinolides T2 (2), T3 (3), and T4 (4), structurally related to amphidinolide T1 (1) have been isolated from two strains of marine dinoflagellates of the genus Amphidinium. The structures of 2-4 were elucidated on the basis of spectroscopic data. The absolute configurations at C-7, C-8, and C-10 of 1-4 were determined by comparison of NMR data of their C-1-C-12 segments with those of synthetic model compounds for the tetrahydrofuran portion. The biosynthetic origins of amphidinolide T1 (1) were investigated on the basis of 13C NMR data of a 13C enriched sample obtained by feeding experiments with [1-(13)C], [2-(13)C], and [1,2-(13)C2] sodium acetates and 13C-labeled sodium bicarbonate in the cultures of the dinoflagellate. These incorporation patterns suggested that amphidinolide T1 (1) was generated from four successive polyketide chains, an isolated C1 unit formed from C-2 of acetates, and three unusual C2 units derived only from C-2 of acetates. Furthermore, it is noted that five oxygenated carbons of C-1, C-7, C-12, C-13, and C-18 were not derived from the C-1 carbonyl, but from the C-2 methyl of acetates.     

Organic syntheses based on 2-oxoglutaric acid. V. Syntheses of novel 2H-1,4-benzothiazines and a 2,5-dihydro-1,5-benzothiazepine

Syntheses aimed on the incorporation in heterocycles of segments originating in the precursor 2-oxoglutaric acid are described. Cylocondensation of dimethyl 2-oxoglutarate 1 , dimethyl 3-bromo-2-oxoglutarate 2 , and dimethyl (E)-2-oxoglutaconate 3 with 2-aminobenzenethiol gave rise to the novel 2H-1,4-benzothiazines 4 and 5 , and the 2,5-dihydro-1,5-benzothiazepine 6 , respectively, by incorporation of either the segments C-1/C-2 or C-2/C-3 or C-3/C-4/C-5 of the precursor.     

Solid-state photodimerization of cholest-4-en-3-one

Crystalline cholest-4-en-3-one undergoes solid-state dimerization by UV radiation to give two ring A - ring A connected dimers. No dimerization occurs in solution. The first dimer, characterized by a cyclobutane ring, is formed by connection of C-2 and C-3 of a moiety with C-5' and C-6' of another moiety, respectively. The latter dimer has a six-membered ketal ring formed by connection of C-2 with C-5' and of O, linked to C-3, with C-3'. The structures have been determined by spectroscopic means. X-ray analysis of title compound evidences the proximity of the axial H-2 of a molecule to the C-4' of a molecule in the upper layer. The transfer of the hydrogen and the connection between C-2 and C-5' might be the driving force of dimerization.     

Fragmentation of dipyridamole and related dipyrimidines by electrospray ionization collisional activated decomposition mass spectrometry

The coronary vasodilator, co-activator of antitumor compounds and antioxidant drug dipyridamole and several of its derivatives were studied by electrospray ionization (ESI) combined with collisional activated decomposition (CAD) in both positive and negative modes. These compounds produce abundant monocharged ions ([M + H](+)) under ESI. Interpretation of the CAD spectra showed that fragmentation occurs preferentially in the ethanolamine groups attached at C-2, C-4, C-6 and C-8. 2-Methoxyethanol is eliminated when ethanolamines are in positions C-2/C-6 and 2-aziridinethanol is eliminated from C-4/C-8 ethanolamines. The proposed fragmentation schemes were supported by deuterium labeling experiments and tandem mass spectrometry.     

Les spectres de masse dans l' analyse 10e communication [1] les transferts d'hygrogène dans des cétones norbornyliques

Some simple rules for predicting the transfer of endo hydrogens in the mass spectra of norbornane carbonyl derivatives are proposed. Transfers from C-6 to C-2 generally occur, but are repressed if a methyl group is on C-1. Transfers from C-5 to C-2 can occur, but are less favorable than 1-3 transfers. Endo-2-acetylnorbornanes undergo a γ-hydrogen transfer from C-5 with ring fission.     

Antibiotika aus actinomyceten. zur stereochemie der griseorhodine

On the basis of chemical reactions, ¹H-NMR-studies, and model inspections the configurations of the antibiotics griseorhodin A and griseorhodin C have been determined as follows: griseorhodin A C-3'(R), C-2/2' (S), C-3 (R), C-4 (R) or its enantiomer, griseorhodin C C-3' (R), C-2/2' (S), C-3 (R), C-4 (S) or its enantiomer.     

Sequential functionalization of pyrazole 1-oxides via regioselective metalation: synthesis of 3,4,5-trisubstituted 1-hydroxypyrazoles

A range of 3,5-diarylated and 3,4,5-triarylated 2-(4-methoxybenzyl)pyrazole 1-oxides have been prepared by regioselective deprotonation at C-5 or bromine-magnesium exchange at C-3 or C-4 followed by transmetalation with ZnCl(2) and palladium(0)-catalyzed cross-coupling. Furthermore, the metalated pyrazole 1-oxides could be trapped with electrophiles. The sequential metalation/functionalization of the pyrazole 1-oxides may follow the order C-5, C-3, C-4, or alternatively the order C-3, C-5, C-4. The 4-methoxybenzyl group of the functionalized 2-(4-methoxybenzyl)pyrazole 1-oxides could be removed by treatment with TFA and i-Pr(3)SiH in CH(2)Cl(2), providing the corresponding functionalized 1-hydroxypyrazoles.     

Derivatives and reactions of glutacondialdehyde V : The crystal and molecular structure of 5-hydroxy-trans-2, trans-4-pentadienal acetate. The charge distribution in the glutacondialdehyde anion

The structure of 5-hydroxy-trans-2, trans-4-pentadienal acetate has been determined, using three-dimensional diffractometercollected X-ray data. The compound has the all-trans configuration with the atoms C-1 to C-5 in a plane. The charge distribution in the acetate and in the glutacondialdehyde anion have been calculated using the CNDO/2 approximation. In both compounds higher negative charges were found on carbon atoms C-2 and C-4 than on C-1, C-3 and C-5.     

Structural and mechanistic studies on anthocyanidin synthase catalysed oxidation of flavanone substrates: the effect of C-2 stereochemistry on product selectivity and mechanism

During the biosynthesis of the tricyclic flavonoid natural products in plants, oxidative modifications to the central C-ring are catalysed by Fe(ii) and 2-oxoglutarate dependent oxygenases. The reactions catalysed by three of these enzymes; flavone synthase I, flavonol synthase and anthocyanidin synthase (ANS), are formally desaturations. In comparison, flavanone 3beta-hydroxylase catalyses hydroxylation at the C-3 pro-R position of 2S-naringenin. Incubation of ANS with the unnatural substrate (+/-)-naringenin results in predominantly C-3 hydroxylation to give cis-dihydrokaempferol as the major product; trans-dihydrokaempferol and the desaturation product, apigenin are also observed. Labelling studies have demonstrated that some of the formal desaturation reactions catalysed by ANS proceed via initial C-3 hydroxylation followed by dehydration at the active site. We describe analyses of the reaction of ANS with 2S- and 2R-naringenin substrates, including the anaerobic crystal structure of an ANS-Fe-2-oxoglutarate-naringenin complex. Together the results reveal that for the 'natural' C-2 stereochemistry of 2S-naringenin, C-3 hydroxylation predominates (>9 : 1) over desaturation, probably due to the inaccessibility of the C-2 hydrogen to the iron centre. For the 2R-naringenin substrate, desaturation is significantly increased relative to C-3 hydroxylation (ca. 1 : 1); this is probably a result of both the C-3 pro-S and C-2 hydrogen atoms being accessible to the reactive oxidising intermediate in this substrate. In contrast to the hydroxylation-elimination desaturation mechanism for some ANS substrates, the results imply that the ANS catalysed desaturation of 2R-naringenin to form apigenin proceeds with a syn-arrangement of eliminated hydrogen atoms and not via an oxygenated (gem-diol) flavonoid intermediate. Thus, by utilising flavonoid substrates with different C-2 stereochemistries, the balance between C-3 hydroxylation or C-2, C-3 desaturation mechanisms can be altered.     

Assignment of the liposidomycin diazepanone stereochemistry

The liposidomycins comprise a family of complex nucleoside antibiotics that inhibit bacterial peptidoglycan synthesis. Their structures (1, 2) feature nucleoside, ribofuranoside, diazepanone, and lipid regions. Several stereogenic centers remain unassigned, including three within the diazepanone region: C-6', C-2'", and C-3'". An intramolecular reductive amination reaction has been used to prepare model diazepanones. Analysis of 40 and two of its diastereomers by NMR spectroscopy, X-ray crystallography, and molecular modeling indicates a close relative configurational and conformational match between 40 and the liposidomycin diazepanone degradation product 43 and allows the assignment of stereochemistry of the natural products as either [C-6'(R), C-2'"(R), C-3'"(R)] or [C-6'(S), C-2'"(S), C-3'"(S)].     

Control of Porosity by Using Isoreticular Zeolitic Imidazolate Frameworks (IRZIFs) as a Template for Porous Carbon Synthesis

Herein, by using isoreticular zeolitic imidazolate frameworks (IRZIFs) as a template, we report the synthesis, morphology, and gas adsorption properties of porous carbon synthesized by a nanocasting method at 1000?°C, in which furfuryl alcohol (FA) was used as a carbon source. By using IRZIFs with variable porosity as templates, we could achieve control over the carbon porosity and H(2) and CO(2) uptake. The resultant microporous carbon C-70, synthesized by using ZIF-70 as the template, is the most porous (Brunauer-Emmett-Teller (BET) surface area 1510?m(2) g(-1) ). Carbon C-68, synthesized by using ZIF-68, has moderate porosity (BET surface area 1311?m(2) g(-1) ), and C-69, synthesized by using ZIF-69, has the lowest porosity in this series (BET surface area 1171?m(2) g(-1) ). The porous carbons C-70, C-68, and C-69, which have graphitic texture, have promising H(2) uptake capacities of 2.37, 2.15, and 1.96?wt?%, respectively, at 77?K and 1?atm. Additionally, C-70, C-68, and C-69 show CO(2) uptake capacities of 5.45, 4.98, and 4.54?mmol?g(-1) , respectively, at 273?K and 1?atm. The gas uptake trends shown by C-70, C-68, and C-69 clearly indicate the dependence of carbon porosity on the host template. Moreover, the as-synthesized carbons C-70, C-68, and C-69 show variable conductivity.     

The chemical synthesis of beta-(1-->4)-linked D-mannobiose and D-mannotriose

A D-cellobiose derivative was converted to D-mannobiose via simultaneous epimerization at C-2 and C-2'. Subsequent beta-D-glucosylation and epimerization at C-2" gave D-mannotriose.     

Application of a multi-dentate amphiphilic compound to transfer silver nanoparticles into an organic solvent

A multi-dentate amphiphilic compound, 3,3'-(dodecylazanediyl)-bis-[N-(2-aminoethyl)propanamide] (12C-2NH2) has been synthesized. The molecular structure was characterized by Fourier transform infrared (FT-IR) spectroscopy, ultraviolet-visible (UV-vis) spectra, nuclear magnetic resonance (NMR) spectra, and fast atom bombardment mass (FAB-MS) spectra. 12C-2NH2 was employed to stabilize silver nanoparticles. Surface properties and stability of silver nanoparticles were controlled by adjusting the 12C-2NH2 to silver (0) molar ratio. 12C-2NH2 was also applied to transfer silver nanoparticles from an aqueous to an organic phase. The transfer efficiency depends on 12C-2NH2 concentration. When 12C-2NH2 to silver (0) molar ratio was 2:1, the highest efficiency of phase transfer to toluene was obtained. These 12C-2NH2 stabilized silver nanoparticles are very stable over a period of four days in toluene.     

Synthesis of 1-hydroxy-substituted pyrazolo[3,4-c]- and pyrazolo[4, 3-c]quinolines and -isoquinolines from 4- and 5-aryl-substituted 1-benzyloxypyrazoles

1-Hydroxypyrazolo[3,4-c]quinoline (22), 1-hydroxypyrazolo[4, 3-c]quinoline (21), 1-hydroxypyrazolo[3,4-c]isoquinoline (20), and 1-hydroxypyrazolo[4,3-c]isoquinoline (19) were prepared from 1-benzyloxypyrazole (6), establishing the pyridine B-ring in the terminal step. The pyridine ring of pyrazoloquinolines 14 and 18 was formed via cyclization of a formyl group at C-4 or C-5 and an amino group of a 2-aminophenyl substituent at C-5 or C-4 in 1-benzyloxypyrazole. The pyridine ring of pyrazoloisoquinolines 5 and 9 was created via cyclization of a formyl group in a 2-formylphenyl substituent at C-4 or C-5 with an iminophosphorane group installed at C-5 or C-4 of 1-benzyloxypyrazole by lithiation followed by reaction with tosyl azide and then with tributylphoshine utilizing the Staudinger/aza-Wittig protocol. The 2-aminophenyl and the 2-formylphenyl substituent were introduced at C-5 or C-4 by regioselective metalation followed by transmetalation to the pyrazolylzinc halide and subsequent palladium-catalyzed cross-coupling with 2-iodoaniline or 2-bromobenzaldehyde. The order of reactions and use of protecting groups in the individual sequences have been optimized. The 1-benzyloxy-substituted pyrazoloquinolines and isoquinolines thus obtained were debenzylated by strong acid to the corresponding 1-hydroxy-substituted pyrazoloquinolines and isoquinolines 19-22.     

1H NMR study of protected and unprotected kainoid amino acids: facile assignment of C-4 stereochemistry

The kainoid amino acids exhibit potent neuroexcitatory activity in the mammalian central nervous system. Around their pyrrolidine ring, a trans disposition between the C-2 and C-3 substituents and a cis relationship between the C-3 and C-4 substituents are crucial for their potent biological activity. During synthetic studies into the kainoids, we have established a straightforward, empirical rule, which allows the facile assignment of C-4 stereochemistry to both protected and unprotected kainoids. When pairs of C-4 epimers are available, the rule indicates that, when their (1)H NMR spectra are compared, one of the methylene protons on the C-3 side chain appears at significantly lower chemical shift in the C-3, C-4 cis isomer than the corresponding signal for the proton in the spectrum for the C-3, C-4 trans isomer. In addition, the rule states that the difference in chemical shift between the two individual protons on the C-3 side chain of the C-3, C-4 cis isomer is significantly greater than the corresponding difference for the C-3, C-4 trans isomer. The rule is demonstrated for kainoids possessing an unsaturated substituent at C-4 and when comparing spectra in D(2)O for pairs of unprotected C-4 epimers, the spectra were recorded at approximately the same pD.     

1H- und 13C-NMR-spektroskopische Untersuchungen zur Ladungsverteilung in substituierten 1,3-Dioxan-2-ylium-Salzen

The ¹H and ¹³C NMR spectra of a series of 1,3-dioxan-2-ylium salts substituted at C-2 and C-4, C-5, C-6 have been measured. The atomic charge distribution in 1,3-dioxan- and 1,3-dioxolan-2-ylium cations has been calculated with the MINDO/3 method, leading to a linear correlation between π-charge and ¹³C chemical shift at C-2. The strong C-21-proton downfield shift is caused by the anisotropic influence of the mesomeric cation system. The conformations of substituted 1,3-dioxan-2-ylium cations are discussed.     

Group additive values for the gas phase standard enthalpy of formation of hydrocarbons and hydrocarbon radicals

A complete and consistent set of 95 Benson group additive values (GAV) for the standard enthalpy of formation of hydrocarbons and hydrocarbon radicals at 298 K and 1 bar is derived from an extensive and accurate database of 233 ab initio standard enthalpies of formation, calculated at the CBS-QB3 level of theory. The accuracy of the database was further improved by adding newly determined bond additive corrections (BAC) to the CBS-QB3 enthalpies. The mean absolute deviation (MAD) for a training set of 51 hydrocarbons is better than 2 kJ mol(-1). GAVs for 16 hydrocarbon groups, i.e., C(C(d))(3)(C), C-(C(d))(4), C-(C(t))(C(d))(C)(2), C-(C(t))(C(d))(2)(C), C-(C(t))(C(d))(3), C-(C(t))(2)(C)(2), C-(C(t))(2)(C(d))(C), C-(C(t))(2)(C(d))(2), C-(C(t))(3)(C), C-(C(t))(3)(C(d)), C-(C(t))(4), C-(C(b))(C(d))(C)(H), C-(C(b))(C(t))(H)(2), C-(C(b))(C(t))(C)(H), C-(C(b))(C(t))(C)(2), C(d)-(C(b))(C(t)), for 25 hydrocarbon radical groups, and several ring strain corrections (RSC) are determined for the first time. The new parameters significantly extend the applicability of Benson's group additivity method. The extensive database allowed an evaluation of previously proposed methods to account for non-next-nearest neighbor interactions (NNI). Here, a novel consistent scheme is proposed to account for NNIs in radicals. In addition, hydrogen bond increments (HBI) are determined for the calculation of radical standard enthalpies of formation. In particular for resonance stabilized radicals, the HBI method provides an improvement over Benson's group additivity method.     

A convenient oxazole C-2 protecting group: the synthesis of 4- and 5-substituted oxazoles via metalation of 2-triisopropylsilyloxazoles

[reaction: see text] Metalation of oxazoles at the 4 and 5 position was achieved after regioselective C-2 silyl protection. Removal of the protecting group was then accomplished under mild conditions allowing for a straightforward preparation of C-5 monosubstituted and C-4,5 disubstituted oxazoles. The first practical C-2 protecting group of oxazoles has been demonstrated.     

Methyl substituent probe of the transition state for thermal decarbonylation of endo-tricyclo[3.2.1.02,4]octan-8-one

Methyl substituent probes at the C-2 and C-2,C-4 positions of $\text{endo}$-tricyclo[3.2.1.0^2,4] octan-8-one($\text{1}$) have provided kinetic evidence confirming the simultaneity of C-2,C-4 cyclopropane bond cleavage in the rate-determining step for thermal extrusion of carbon monoxide.