3-Diazopyrroles—IV. Structure determination using 13C NMR spectroscopy

On the basis of the ¹³C NMR chemical shifts, it is proposed that, although b is the major canonical structure, structure c, in which a negative charge resides at C-3, provides an important contribution to the resonance stabilization of the 3-diazopyrroles, 1–4.     

Studies on the conformational flexibility of α-L-rhamnose-containing oligosaccharides using 13C-site-specific labeling, NMR spectroscopy and molecular simulations: implications for the three-dimensional structure of bacterial rhamnan polysaccharides

Bacterial polysaccharides are comprised of a variety of monosaccharides, L-rhamnose (6-deoxy-L-mannose) being one of them. This sugar is often part of α-(1 → 2)- and/or α-(1 → 3)-linkages and we have therefore studied the disaccharide α-L-Rhap-(1 → 2)-α-L-Rhap-OMe to obtain information on conformational preferences at this glycosidic linkage. The target disaccharide was synthesized with (13)C site-specific labeling at C1' and at C2', i.e., in the terminal group. 2D (1)H,(13)C-HSQC-HECADE and (1)H,(13)C-J-HMBC NMR experiments, 1D (13)C and (1)H NMR spectra together with total line-shape analysis were used to extract conformationally dependent hetero- and homonuclear spin-spin coupling constants. This resulted in the determination of (2)J(C2',H1'), (3)J(C1',C1), (3)J(C1',C3), (3)J(C2',C2), (2)J(C1',C2), (1)J(C1',C2'), and (1)J(C1',H1'). These data together with previously determined J(CH) and (1)H,(1)H NOEs result in fourteen conformationally dependent NMR parameters that are available for analysis of glycosidic linkage flexibility and conformational preferences. A 100 ns molecular dynamics (MD) simulation of the disaccharide with explicit water molecules as solvent showed a major conformational state at φ(H)≈ 40° and ψ(H)≈-35°, consistent with experimental NMR data. In addition, MD simulations were carried out also for α-L-Rhap-(1 → 3)-α-L-Rhap-OMe and a rhamnan hexasaccharide. The gathered information on the oligosaccharides was used to address conformational preferences for a larger structure, a 2- and 3-linked nonasaccharide, with implications for the 3D structure of rhamnan polysaccharides, which should be regarded as flexible polymers.     

Studies on the biosynthesis of arteannuin——Ⅳ.The biosynthesis of arteanniuin and arteannuin B by the leaf homogenate of Artemisia annua L.

Arteannuic acid and(-)11R,13-d ydroarteannuic acid are the key intermediates in thebiosynthesis of arteannuin by the leaf homogenate of Artemisia annua L.,and arteannuic acid andepoxyarteannuic acid are the intermediates of arteannuin B.and epoxyarteannuic acid can not betransformed into arteannuin by the homogenate.     

Quantitative evaluation of the biosynthetic pathways leading to δ-aminolevulinic acid from the Shemin precursor glycine via the C5 pathway in Arthrobacter hyalinus by analysis of 13C-labeled coproporphyrinogen III biosynthesized from [2-13C]glycine, [1-13C]acetate, and [2-13C]acetate using 13C NMR spectroscopy

The biosynthetic pathways leading to δ-aminolevulinic acid (ALA) from the Shemin precursor glycine via the C5 pathway in Arthrobacter hyalinus were quantitatively evaluated by means of feeding experiments with [2-¹³C]glycine, sodium [1-¹³C]acetate, and sodium [2-¹³C]acetate, followed by analysis of the labeling patterns of coproporphyrinogen III (Copro’gen III) (biosynthesized from ALA) using ¹³C NMR spectroscopy. Two biosynthetic pathways leading to ALA from glycine via the C5 pathway were identified: i.e., transformation of glycine to l-serine catalyzed by glycine hydroxymethyltransferase, and glycine synthase-catalyzed catabolism of glycine to N ⁵,N ¹⁰-methylene-tetrahydrofolic acid (THF), which reacts with another molecule of glycine to afford l-serine. l-Serine is transformed to acetyl-CoA via pyruvic acid. Acetyl-CoA enters the tricarboxylic acid cycle, affording 2-oxoglutaric acid, which in turn is transformed to l-glutamic acid. The l-glutamic acid enters the C5 pathway, affording ALA in A. hyalinus. A ¹³C NMR spectroscopic comparison of the labeling patterns of Copro’gen III obtained after feeding of [2-¹³C]glycine, sodium [1-¹³C]acetate, and sodium [2-¹³C]acetate showed that [2-¹³C]glycine transformation and [2-¹³C]glycine catabolism in A. hyalinus proceed in the ratio of 52 and 48 %. The reaction of [2-¹³C]glycine and N ⁵,N ¹⁰-methylene-THF, that of glycine and N ⁵,N ¹⁰-[methylene-¹³C]methylene-THF generated from the [2-¹³C]glycine catabolism, and that of [2-¹³C]glycine and N ⁵,N ¹⁰-[methylene-¹³C]methylene-THF transformed the fed [2-¹³C]glycine to [1-¹³C]acetyl-CoA, [2-¹³C]acetyl-CoA, and [1,2-¹³C₂]acetyl-CoA in the ratios of 42, 37, and 21 %, respectively. These labeled acetyl-CoAs were then incorporated into ALA. Our results provide a quantitative picture of the pathways of biosynthetic transformation to ALA from glycine in A. hyalinus.     

Thermodynamic and 13C NMR Studies of the Inclusion Complexes of α- and β-Cyclodextrins with Cyano- and Nitrophenols in Aqueous Solution

Equilibrium constants for the formation of 1 : 1 inclusioncomplexes of -cyclodextrin (-CD) with neutral and anionic phenol derivatives (3- and 4-cyanophenols and 3- and 4-nitrophenols) have been evaluated at 5, 12, 25, and 35 °C by means of spectrophotometry. Similarly, the equilibrium constants have been determined for the inclusion complexes of-cyclodextrin (-CD) with the phenols. Enthalpy and entropy changes for the formationof the inclusion complexes have been estimated from the temperature dependences of theequilibrium constants. With -CD, the enthalpy andentropy changes for the anionic species have been found to be more negative than those for the neutral ones, except for 4-cyanophenol, suggesting that the inclusion complexes of the anionic species are more rigid than those of the neutral species. From analyses of chemical shift differences in ¹³C NMR spectra of 3- and 4-cyanophenolsand 3- and 4-nitrophenols in aqueous solutions with and without CDs, a nitro ora cyano group has been found to be first bound to the - and -CD cavities.     

Studies on Agarofurans Ⅷ.Synthesis of the Metabolites of 4—Butyl—α—agarofuran

The structures of five metabolites (2-6) of agarofuran 1 were confirmed by synthesis. The configuration of the secondary hydroxyl in 7 was determined by Horeau′s method. The configuration of C-2 in compound 4 and 5 was determined by their stereochemistry and NMR.     

Influence of the Thiophene Ring on the Molecular Order of Structurally Simple π-Conjugated Smectogens: 13C NMR Study

Structurally simple rod-like π-conjugated mesogens with thiophene directly connected to phenyl, biphenyl, and fluorenone rings with terminal chains are synthesized respectively. The occurrence of smectic A/smectic C phases is concurred by a hot-stage optical polarising microscope (HOPM), differential scanning calorimetry (DSC), and X-ray diffraction (XRD). The static 1D and 2D ¹³C nuclear magnetic resonance (NMR) studies in the liquid crystalline phase are carried out to find the alignment-induced chemical shifts (AIS) and ¹³C−¹H dipolar couplings. The orientational order parameters of the mesogens determined from ¹³C−¹H dipolar couplings disclose that the long axis is not only collinear to the C3−C4 bond of the thiophene ring but also for the local axes of phenyl and biphenyl rings. For fluorenone-based mesogen, the molecular biaxiality is found to be high owing to the increased breadth of the molecule. The study unveils that the orientation of thiophene and the phenyl rings is similar in the current mesogens in stark contrast to mesogens, where thiophene is connected to phenyl rings through linking groups.     

N-Perhalofluoroalkylation of secondary amines by the reactions of the amines and amides with perhalofluoroalkanes. Halophilic attack on nitrogen nucleophile on CBr bond.

Secondary amines and amides react spontaneously with perhalofluoroalkanes CF₂BrCFBrX(X = F, Cl, CF₃) to afford N-perhalofluoroalkylated tertiary amines in fair to good yields. Evidence for an anionic chain process initiated by the bromophilic attack of nitrogen nucleophiles on CBr bonds is given.     

Trimethylsilylation - Aid in NMR Analysis of Oligosaccharides. Assigment of 29Si and 13C NMR Spectra of Trimethylsilylated Methyl β-D-Xylobiosides by 2D NMR

The ¹H, ¹³C and ²⁹Si NMR spectra of methyl β-D-xylopyranoside and three methyl β-D-xylopyranosyl-β-D-xylopyranosides have been measured and assigned by two-dimensional NMR spectroscopy. According to the determined proton-proton coupling constants, the ring conformer ratio is essential ly the same in the studied compounds. The assigned chemical shifts provide correct substituent chemical shifts for assignments in the spectra of higher trimethylsilylated xylooligosaccharides. Heteronuclear chemical shift correlated 2D NMR spectroscopy is proven to be a usable experimental method for ²⁹Si NMR line assignment in carbohydrates. The assigned silicon shifts identify the site of glycosidation.     

13C NMR Spectroscopy on the Complexation of α-Cyclodextrin with 1-Alkanols and 1-Alkanoate Ions

Binding constants for -cyclodextrin ( -CD) complexes with 1- alkanols and 1- alkanoate ions were determined by analyzing changes ( ) in chemical shifts of guest ¹³C NMR signals with -CD concentration. The guests gave well-separated ¹³C NMR signals. The curve-fitting analyses of for individual carbons upon assumption of a simple 1:1 complexation gave virtually the same binding constants (K₁) in the cases of guests with relatively short alkyl chains, such as 1-propanol, 1-butanol, 1- pentanol , 1- butanoate , 1- pentanoate , and 1-hexanoate. However, thus obtained individual K₁ values were significantly different from one another, when the guests had relatively long alkyl chains such as 1- hexanol , 1- heptanol , and 1-octanoate. In these guests, satisfactorily consistent K₁ values were obtained by the curve-fitting analyses of for individual carbons upon an assumption that not only 1:1 but also 2:1 (host:guest) complexation occurs.     

Solvent sensitivity of ortho substituent effect on 13C NMR chemical shift of the carboxyl carbon (δco) in benzoic acid

A reverse ortho effect is observed for the (13)C NMR chemical shifts of the carboxyl carbon (δ(co)) in benzoic acids measured in aprotic solvents of varying polarity. The ortho effect on δ(co) is best described by a combination of the reverse field and steric accelerating effects of the substituent in an 80: 20 pattern in apolar aprotic solvents and a 60: 40 pattern in dipolar aprotic ones. Interestingly, no good enough correlation was found between δ(co) and log k(1) of the acids measured in similar solvents. A critical analysis of the results clearly indicates the use of an apolar aprotic solvent and not a dipolar aprotic one as the solvent of choice for investigating intrinsic substituent effects on δ(c) in an aromatic system.     

Synthesis,GC-EIMS,~1H NMR,~(13)C NMR,Mechanistic and Thermal Studies of o-Xylylene-α,α'-bis (triphenylphosphinebromide)

Organophosphorous compounds containing phosphorus as an integral part have been widely used in industry, organic synthesis and optoelectronics. o-Xylylene-α,α'-bis(triphenylphosphinebromide)(OXBTPPB) is a facile reagent to convert o-quinones(e.g., 9,10-phenanthrenequinone) into polycyclic aromatic hydrocarbons(PAHs). Herein lies an improved synthetic route to OXBTPPB. The resultant was carefully characterized with GC-EIMS, 1H NMR, 13C NMR, spectroscopic techniques. The EIMS shows characteristic peaks at m/z...     

Studies on taxol biosynthesis. Preparation of 5α-acetoxytaxa-4(20),11-dien-2α,10β-diol derivatives by deoxygenation of a taxadiene tetra-acetate obtained from Japanese yew

The putative metabolite, 5α-acetoxytaxa-4(20),11-dien-2α,10β-diol (7), which is a promising candidate as a biosynthetic pathway triol in taxol biosynthesis, has been prepared by Barton deoxygenation of the C-14-hydroxyl group of a differentially protected derivative of natural 2α,5α,10β-triacetoxy-14β-(2-methyl)-butyryloxytaxa-4(20),11-diene (8), a major taxoid metabolite isolated from Japanese Yew heart wood. The synthetic protocol devised, is amenable for the preparation of isotopically labeled congeners that will be useful to probe further intermediate steps in the biosynthesis of taxol.     

Spectroscopic Studies on the Thermodynamics of the Complexation of Trivalent Curium with Propionate in the Temperature Range from 20 to 90 °C

The thermodynamics of the stepwise complexation reaction of Cm(III) with propionate was studied by time resolved laser fluorescence spectroscopy (TRLFS) and UV/Vis absorption spectroscopy as a function of the ligand concentration, the ionic strength and temperature (20–90 °C). The molar fractions of the 1:1 and 1:2 complexes were quantified by peak deconvolution of the emission spectra at each temperature, yielding the log₁₀ $ K_{n}^{\prime } $ values. Using the specific ion interaction theory (SIT), the thermodynamic stability constants log₁₀ $ K_{n}^{0} (T) $ were determined. The log₁₀ $ K_{n}^{0} (T) $ values show a distinct increase by 0.15 (n = 1) and 1.0 (n = 2) orders of magnitude in the studied temperature range, respectively. The temperature dependency of the log₁₀ $ K_{n}^{0} (T) $ values is well described by the integrated van’t Hoff equation, assuming a constant enthalpy of reaction and $ \Updelta_{\text{r}} C^\circ_{{p,{\text{m}}}} = 0, $ yielding the thermodynamic standard state $ \left( {\Updelta_{\text{r}} H^\circ_{\text{m}} ,\Updelta_{\text{r}} S^\circ_{\text{m}} ,\Updelta_{\text{r}} G^\circ_{\text{m}} } \right) $ values for the formation of the $ {\text{Cm(Prop)}}_{n}^{3 - n} $ , n = (1, 2) species.     

Knight Shift in 13C NMR Resonances Confirms the Coordination of N-Heterocyclic Carbene Ligands to Water-Soluble Palladium Nanoparticles

The coordination of N-heterocyclic carbene (NHC) ligands to the surface of 3.7 nm palladium nanoparticles (PdNPs) can be unambiguously established by observation of Knight shift (KS) in the ¹³C resonance of the carbenic carbon. In order to validate this coordination, PdNPs with sizes ranging from 1.3 to 4.8 nm were prepared by thermal decomposition or reduction with CO of a dimethyl NHC Pd^II complex. NMR studies after ¹³CO adsorption established that the KS shifts the ¹³C resonances of the chemisorbed molecules several hundreds of ppm to high frequencies only when the particle exceeds a critical size of around 2 nm. Finally, the resonance of a carbenic carbon is reported to be Knight-shifted to 600 ppm for ¹³C-labelled NHCs bound to PdNPs of 3.7 nm. The observation of these very broad KS resonances was facilitated by using Car–Purcell–Meiboom–Gill (CPMG) echo train acquisition NMR experiments.     

The Effects of Cosolvents on the Complexation of α-Cyclodextrin with Alkylated Substances. Calorimetric Studies at 25 °C

The formation of complexes of -cyclodextrin with 1,2-alkanediols, ,-alkanediols and some cycloalkanols has been studied calorimetrically at 25 °C in water, in 7 mol kg^-1 aqueous urea and in 3 mol kg^-1 aqueous glucose. When a complex is formed, calorimetry enables the calculation of both the enthalpy and the association constant, from which the free energy and the entropy of the process can be obtained. The forces involved in the association process are discussed in the light of the signs and values of the thermodynamic parameters obtained. The effect of the variation of the aqueous medium on the hydration of the interacting substances and the consequent changes in the association parameters have been investigated. As respect to water, complexes are less stable in urea and more stable in glucose. The analysis of the data shows that this is the result of a different enthalpy-entropy balance in the two solvent media. Deaquation of the interacting substances plays a major role in determining the stability of the inclusion complexes.     

A multinuclear NMR study on the microscopic ionization constants of adenosine-5′-triphosphate in aqueous solution

A ¹H, ¹³C and ³¹P NMR study of adenosine-5′-triphosphate has been performed as a function of pH. The examination of the chemical shifts allowed the proposal of an ionization scheme in which the third deprotonation takes place both on the adenine ring and on the phosphate group in a ratio of about 2:1. Furthermore, an analysis of carbon relaxation times supports this mechanism of ionization and confirms that the adenine ring binds the proton both on the NH₂ group and the N₇ nitrogen atom.