New Charge Transfer Complexes of K+-Channel-Blocker Drug (Amifampridine; AMFP) for Sensitive Detection; Solution Investigations and DFT Studies

UV–Vis spectroscopy was used to investigate two new charge transfer (CT) complexes formed between the K⁺-channel-blocker amifampridine (AMFP) drug and the two π-acceptors 2,3-dichloro-5,6-dicyano-p-benzoquinone (DDQ) and tetracyanoethylene (TCNE) in different solvents. The molecular composition of the new CT complexes was estimated using the continuous variations method and found to be 1:1 for both complexes. The formed CT complexes’ electronic spectra data were further employed for calculating the formation constants (K_CT), molar extinction coefficients (ε_CT), and physical parameters at various temperatures, and the results demonstrated the high stability of both complexes. In addition, sensitive spectrophotometric methods for quantifying AMFP in its pure form were proposed and statistically validated. Furthermore, DFT calculations were used to predict the molecular structures of AMFP–DDQ and AMFP–TCNE complexes in CHCl₃. TD-DFT calculations were also used to predict the electronic spectra of both complexes. A CT-based transition band (exp. 399 and 417 nm) for the AMFP–TCNE complex was calculated at 411.5 nm (f = 0.105, HOMO-1 → LUMO). The two absorption bands at 459 nm (calc. 426.9 nm, f = 0.054) and 584 nm (calc. 628.1 nm, f = 0.111) of the AMFP–DDQ complex were theoretically assigned to HOMO-1 → LUMO and HOMO → LUMO excitations, respectively.     

Reactivity of vanadocene with a nitrile -C identical to N bond activated by a tris(fluorophenyl)borane as Lewis acid: formation of borane adducts of vanada(IV)azirine complexes--EPR evidence for an intramolecular C-F...V interaction

Reaction of vanadocene [V(Cp)2] with "activated" nitrile R1CN.L (L: Lewis acid), obtained by the reaction of borane adducts (L = BR3; R = C6F5, 2,6-F2C6H3, 3,4,5-F3C6H2) with nitriles (CH3CN, F3CC6H4CN), yields the borane adduct of vanada(IV)azirine complexes [V(Cp)2(eta 2-R1C = N.L)]. EPR studies of a fluid solution were conducted on these complexes. A doublet of octets due to the coupling of one unpaired electron of the vanadium with the 51V (I = 7/2) nucleus and to an additional hyperfine coupling to the ortho-F atom borne by the phenyl ring of the borane was elucidated by means of the different Lewis acids used in this work. This EPR behaviour gives evidence for the presence of a C-F...V interaction in a fluid solution with L = B(C6F5)3 and B(2,6-F2C6H3)3. In contrast, the expected eight line EPR pattern is observed with L = B(3,4,5-F3C6H2)3, in which no ortho-F atoms are present in the phenyl ring. A model can be drawn to take into account this flexibility and V...F distances between V and ortho-F atoms are in the expected range for such an interaction.     

Peptide Targeting of PDZ-Dependent Interactions as Pharmacological Intervention in Immune-Related Diseases

PDZ (postsynaptic density (PSD95), discs large (Dlg), and zonula occludens (ZO-1)-dependent interactions are widely distributed within different cell types and regulate a variety of cellular processes. To date, some of these interactions have been identified as targets of small molecules or peptides, mainly related to central nervous system disorders and cancer. Recently, the knowledge of PDZ proteins and their interactions has been extended to various cell types of the immune system, suggesting that their targeting by viral pathogens may constitute an immune evasion mechanism that favors viral replication and dissemination. Thus, the pharmacological modulation of these interactions, either with small molecules or peptides, could help in the control of some immune-related diseases. Deeper structural and functional knowledge of this kind of protein–protein interactions, especially in immune cells, will uncover novel pharmacological targets for a diversity of clinical conditions.     

Expanded Conformations of Monomeric Tau Initiate Its Amyloidogenesis**

Understanding early amyloidogenesis is key to rationally develop therapeutic strategies. Tau protein forms well-characterized pathological deposits but its aggregation mechanism is still poorly understood. Using single-molecule force spectroscopy based on a mechanical protection strategy, we studied the conformational landscape of the monomeric tau repeat domain (tau-RD_244-368). We found two sets of conformational states, whose frequency is influenced by mutations and the chemical context. While pathological mutations Δ280K and P301L and a pro-amyloidogenic milieu favored expanded conformations and destabilized local structures, an anti-amyloidogenic environment promoted a compact ensemble, including a conformer whose topology might mask two amyloidogenic segments. Our results reveal that to initiate aggregation, monomeric tau-RD_244-368 decreases its polymorphism adopting expanded conformations. This could account for the distinct structures found in vitro and across tauopathies.     

Domain Analysis and Motif Matcher (DAMM): A Program to Predict Selectivity Determinants in Monosiga brevicollis PDZ Domains Using Human PDZ Data

Choanoflagellates are single-celled eukaryotes with complex signaling pathways. They are considered the closest non-metazoan ancestors to mammals and other metazoans and form multicellular-like states called rosettes. The choanoflagellate Monosiga brevicollis contains over 150 PDZ domains, an important peptide-binding domain in all three domains of life (Archaea, Bacteria, and Eukarya). Therefore, an understanding of PDZ domain signaling pathways in choanoflagellates may provide insight into the origins of multicellularity. PDZ domains recognize the C-terminus of target proteins and regulate signaling and trafficking pathways, as well as cellular adhesion. Here, we developed a computational software suite, Domain Analysis and Motif Matcher (DAMM), that analyzes peptide-binding cleft sequence identity as compared with human PDZ domains and that can be used in combination with literature searches of known human PDZ-interacting sequences to predict target specificity in choanoflagellate PDZ domains. We used this program, protein biochemistry, fluorescence polarization, and structural analyses to characterize the specificity of A9UPE9_MONBE, a M. brevicollis PDZ domain-containing protein with no homology to any metazoan protein, finding that its PDZ domain is most similar to those of the DLG family. We then identified two endogenous sequences that bind A9UPE9 PDZ with <100 μM affinity, a value commonly considered the threshold for cellular PDZ–peptide interactions. Taken together, this approach can be used to predict cellular targets of previously uncharacterized PDZ domains in choanoflagellates and other organisms. Our data contribute to investigations into choanoflagellate signaling and how it informs metazoan evolution.     

Osmotic backwash mechanism of reverse osmosis membranes

A new osmotic backwash (BW) model for reverse osmosis (RO) membranes was developed for conditions of no applied pressures across the membrane. This analytical model has one adjustable parameter representing the coefficient of a linearized convection term in the general convection–diffusion equation. An experimental RO/BW system was used for 12 data sets to verify the proposed BW model and illustrate its predictability. Results show deviations of the model from the data within a range of 5–15%. The described dilution mechanism of the feed concentration polarization (CP) layer is based on RO originated concentrated layer detachment from the membrane surface followed by its gradual dilution.The understanding gained in this research may be applied to automatic RO/BW cleaning cycles. A dominant RO parameter of the BW process is the RO initial driving force—the concentration difference across the membrane. Other RO process parameters – applied pressure and feed flow rate – have lesser effects. Both theoretical and experimental methods provide quantitative relationships between RO and BW variables that enable an understanding and control of the BW process.     

Guest induced reversible on–off switching of elastic frustration in a 3D spin crossover coordination polymer with room temperature hysteretic behaviour

A binary reversible switch between low-temperature multi-step spin crossover (SCO), through the evolution of the population γ_HS(T) with high-spin (HS)-low-spin (LS) sequence: HS₁LS₀ (state 1) ↔ HS_2/3LS_1/3 (state 2) ↔ HS_1/2LS_1/2 (state 3) ↔ HS_1/3LS_2/3 (state 4) ↔ HS₀LS₁ (state 5), and complete one step hysteretic spin transition featuring 20 K wide thermal hysteresis centred at 290 K occurs in the three-dimensional (3D) Hofmann-type porous coordination polymer {Fe^II(3,8phen)[Au(CN)₂]₂}·xPhNO₂ (3,8phen = 3,8-phenanthroline, PhNO₂ = nitrobenzene), made up of two identical interpenetrated pcu-type frameworks. The included PhNO₂ guest (x = 1, 1·PhNO₂) acts as a molecular wedge between the interpenetrated 3D frameworks via PhNO₂-3,8phen intermolecular recognition and is the source of the strong elastic frustration responsible for the multi-step regime. Detailed X-ray single crystal analysis reflects competition between spatial periodicities of structurally inequivalent HS and LS SCO centres featuring: (i) symmetry breaking (state 3) with ⋯HS–LS⋯ ordering with γ_HS = 1/2; and (ii) occurrence of spatial modulation of the structure providing evidence for stabilization of local or aperiodic ordered mixed spin states for states 2 and 4 (with γ_HS ≈ 2/3) and 4 (with γ_HS ≈ 1/3), respectively. Below c.a. 20 K, structural and magnetic analyses show the photogeneration of a metastable HS*, state 6. The room-temperature single-step hysteretic regime appears with release of the guest (x = 0, 1) and the elastic frustration, and reversibly switches back to the original four-step behaviour upon guest re-adsorption. Both uncommon relevant SCO events meeting in the same material represent a rare opportunity to compare them in the frame of antiferro- and ferro-elastic transitions.

Reversible switch between a robust bistable two-state room temperature spin crossover (SCO) and its transformation in a four-stepped elastically frustrated SCO due to guest inclusion in a metal–organic Hofmann framework.     

Synthesis and structural variations of substituted phenylamide complexes of the heavy alkaline earth metals calcium, strontium and barium

Starting material KN(H)C(6)H(3)-2,6-F(2) was prepared via a transamination reaction from KNH(2) and 2,6-F(2)C(6)H(3)NH(2) in THF and crystallized from 1,4-dioxane (diox) as the three-dimensional polymer [(diox)(1.5)K{N(H)-2,6-F(2)C(6)H(3)}.diox(0.5)](infinity) (1). The metathesis reaction of (THF)(4)CaI(2) with KN(Me)Ph in THF yields monomeric (THF)(4)Ca[N(Me)Ph](2) (2) with a nearly linear N-Ca-N moiety of 179.84(8) degrees . The metathesis reaction of (THF)(4)CaI(2) with KN(H)Mes yields trinuclear (THF)(6)Ca(3)[N(H)Mes](6) (3) with a linear Ca(3) fragment and bridging 2,4,6-trimethylphenylamido groups. The reaction of 1 with (THF)(4)CaI(2) gives dinuclear (THF)(5)Ca(2)[N(H)-2,6-F(2)C(6)H(3)](4).2THF (4) with three bridging and one terminally bound 2,6-difluorophenylamide. A similar reaction of (THF)(5)SrI(2) with KN(H)-2,6-F(2)C(6)H(3) yields dinuclear (THF)(6)Sr(2)[N(H)-2,6-F(2)C(6)H(3)](3)I.THF (5) in which the iodide anion binds terminally. This iodide ligand cannot be substituted as easily by excess KN(H)-2,6-F(2)C(6)H(3). The metathesis reaction of (THF)(5)BaI(2) with KN(H)-2,6-F(2)C(6)H(3) leads to the formation of [(THF)(2)Ba{N(H)-2,6-F(2)C(6)H(3)}(2)](infinity) (6) which crystallizes as a one-dimensional polymer with bridging 2,6-difluorophenylamide anions and additional Ba-F-bonds.     

Determination,by dynamic surface-tension analysis,of the molar mass of proteins denatured in guanidine thiocyanate

A drop-based dynamic surface-tension detector (DSTD) has been used to study the dynamic surface tension behavior of proteins denatured in guanidine thiocyanate (GndSCN). The dynamic surface tension at the air–liquid interface is obtained by measuring the internal pressure of drops that grow and detach at a specified rate. In the method the sample of interest is injected and subsequently flows to the DSTD-sensing capillary tip. For this work, a novel DSTD calibration procedure utilizing two distinct mobile phases is applied. Here, the mobile phases are aqueous with different constituents, for example GndSCN and phosphate buffer, either added or omitted. The dual-mobile phase calibration procedure gives the analyst the capability of making protein measurements in a GndSCN–phosphate buffer mobile phase, while measuring a calibration standard in another mobile phase, such as water, in which the surface tension of the calibration standard is readily available. Results are presented with drop volumes of either 2 L (i.e. 2-s drops) or 7 L (i.e. 7-s drops) for proteins varying in molar mass from 12,000 to 330,000 g mol^–1. We demonstrate that the DSTD can be used to determine the molar mass of proteins denatured in GndSCN. The method applies a regime where the denatured protein is detected by surface-active properties, and selectivity with regard to molar mass is contained in the dynamic component of the DSTD signal. The dynamic surface pressure signals of the denatured proteins suggest that diffusion plays a large role in the kinetics of the surface activity. The limit of detection for the denatured proteins studied ranged from 3 mg L^–1 to 14 mg L^–1. The DSTD, coupled with the novel dual-mobile phase calibration procedure, can be used to investigate the fundamental properties of proteins. Insight into the behavior at the air–liquid interface for native and denatured proteins is achieved; this is a novel tool for studying protein denaturation, complementary to other common approaches such as spectroscopy and calorimetry. Furthermore, the reported method could be widely applied to the study of effects on the interfacial properties of proteins after a variety of chemical and physical modifications that are possible with the dual-mobile phase calibration procedure.     

Synthesis and reactivity of fluorinated ferracarborane anions

The ferracarborane [N(PPh3)2][6,6,6,10,10,10-(CO)6-closo-6,10,1-Fe2CB7H8] reacts in CH2Cl2 with 3 molar equivalents of Ag[PF6] to yield the trifluoro-substituted species [N(PPh3)2][7,8,9-F3-6,6,6,10,10,10-(CO)6-closo-6,10,1-Fe2CB7H5]. Compound undergoes structural rearrangement in toluene at reflux temperatures, forming [N(PPh3)2][8,9,10-F3-6,6,6,7,7,7-(CO)6-closo-6,7,1-Fe2CB7H5]. Alternatively, reaction of either or with a 10-fold excess of Ag[PF6] in CH2Cl2 forms two species: namely, [N(PPh3)2][2,7,9,10-F4-6,6,6,8,8,8-(CO)6-closo-6,8,1-Fe2CB7H4], in which one further B-F substitution has occurred and the {Fe2CB7} cluster core has rearranged, plus a mono-iron co-product, [N(PPh3)2][3,8,9-F3-7,7,7-(CO)3-closo-7,1-FeCB7H5] that is formed by polyhedral contraction. Treatment of with [NO][BF4] in CH2Cl2 results in CO substitution at the 4-connected iron vertex [Fe10], producing the zwitterionic complex [7,8,9-F3-6,6,6,10,10-(CO)5-10-NO-closo-6,10,1-Fe2CB7H5]. Addition of Me3NO to a mixture of and PEt3 in CH2Cl2 also results in CO substitution, forming the isomeric species [N(PPh3)2][7,8,9-F3-6,6,m,10,10-(CO)5-n-PEt3-closo-6,10,1-Fe2CB7H5] [m=6, n=10; m=10, n=6] in a 5:1 ratio. Treatment of with [NO][BF4] and then CNBut in CH2Cl2 allows further, successive CO substitution at Fe10 to yield first a neutral, zwitterionic complex [7,8,9-F3-6,6,6,10-(CO)4-10-NO-10-PEt3-closo-6,10,1-Fe2CB7H5] and then [7,8,9-F3-6,6,6-(CO)3-10-CNBut-10-NO-10-PEt3-closo-6,10,1-Fe2CB7H5]. The molecular structures of compounds and have been established by X-ray diffraction.     

Evidence for possible positive hole transport in the biological protein bovine serum albumin

Using the pulse radiolysis technique, the oxidation of the biological protein bovine serum albumin (BSA) by the species N ₃ ^. , CCl₃O ₂ ^. , OH and Br ₂ ^.– has been studied in aqueous solution. The repair of the N ₃ ^. oxidation by ascorbic acid and the effect of denaturing the protein on this repair has also been studied. The oxidation of Br ₂ ^.– seems to follow a different course from that of the other oxidizing agents suggesting the possibility of positive hole mobility in this protein. The repair by ascorbic acid is found more effective in the case of denatured protein. The rate constants for the reaction of Br ₂ ^– and N ₃ ^. are lower, in general, in the case of the denatured protein as compared with the undenatured BSA both at pH 6.9 and pH 10.7, suggesting that the convoluted structure of the protein plays a part in the process.     

Bimolecular kinetic studies with high-temperature gas-phase 19F NMR: cycloaddition reactions of fluoroolefins

A gas-phase NMR kinetic technique has been used for the first time to obtain accurate measurements of rate constants of some bimolecular, second-order cycloaddition reactions. As a test of the potential use of this technique for the study of second-order reactions, the rate constants and the activation parameters for the cyclodimerization reactions of chlorotrifluoroethylene (CTFE) and tetrafluoroethylene (TFE) were determined in the temperature range 240-340 degrees C, using a commercial high-temperature NMR probe. Obtaining excellent agreement of the results with published data, the technique was then applied to the reaction of 1,1-difluoroallene with 1,3-butadiene, the results of which indicate that the use of gas-phase NMR for reaction kinetics is particularly valuable when a reagent is available only in small amounts and in cases where there are several competing processes occurring simultaneously. The major processes observed in this reaction are regioselective [2+2] and [2+4] cycloadditions, whose rates and activation parameters were determined [k2 = 9.3 x 10(6) exp(-20.1 kcal x mol(-1)/RT) L/mol(-1) x s(-1) and k3 = 1.2 x 10(6) exp(-18.4 kcal x mol(-1)/RT) L/mol(-1) x s(-)(1), respectively] in the temperature range 130-210 degrees C.     

Structure and proton donating ability of 2- and 2,5-bis(1-trifluoromethanesulfonylamido-2,2,2-trichloroethyl)pyrroles

2-(1-Trifluoromethanesulfonylamido-2,2,2-trichloroethyl)pyrrole and 2,5-bis(1-trifluoromethanesulfonylamido-2,2,2-trichloroethyl)pyrrole according to quantum chemical calculations (B3LYP/6-311G**) exist in the isomeric forms whose structure determines the formation of intramolecular hydrogen bonds NH⋯Cl, NH⋯O=S and CH⋯O=S of different strength. Potentiometric and spectroscopic acidity of these compounds is determined. From the data of IR spectroscopy their proton donating ability upon interaction with Lewis bases is shown depending on the presence of intramolecular hydrogen bonds, mutual effects of intermolecular hydrogen bonds formed by the sulfonamide and pyrrole NH groups with the base, and electronic effects of the substituents. Original Russian Text ? L.P. Oznobikhina, N.N. Chipanina, B.A. Shainyan, L.V. Sherstyannikova, V.A. Kukhareva, T.N. Aksamentova, E.V. Kondrashov, G.G. Levkovskaya, 2009, published in Zhurnal Obshchei Khimii, 2009, Vol. 79, No. 2, pp. 326–333.     

Analysis of quantum yields for the photolysis of formaldehyde at lambda > 310 nm

Experimental quantum yields of the photolysis of formaldehyde at lambda > 310 nm are combined with absolute and relative rate calculations for the molecular elimination H2CO --> H2 + CO (1), the bond fission H2CO --> H + HCO (2), and the intramolecular hydrogen abstraction H2CO --> H ... HCO --> H2 + CO (3) taking place in the electronic ground state. Temperature and pressure dependencies of the quantum yields are analyzed with the goal to achieve consistency between experiment and modeling. Two wavelength ranges with considerably different properties are considered: 340-360 nm, where channel 1 competes with collisional deactivation of excited molecules, and 310-340 nm, which is dominated by the competition between the formation of radical and molecular products. The close relation between photolysis and pyrolysis of formaldehyde, such as analyzed for the pyrolysis in the companion paper, is documented and an internally consistent treatment of the two reaction systems is provided. The quantum yields are modeled and represented in analytical form such that values outside the available experimental range can be predicted to some extent.     

Kinetics of the Gas-Phase Reaction of Hydroxyl Radicals with Dimethyl Methylphosphonate (DMMP) over an Extended Temperature Range (273–837 K)

The kinetics of the reaction of hydroxyl radical (OH) with dimethyl methylphosphonate (DMMP, (CH₃O)₂CH₃PO) (reaction 1) OH + DMMP → products (1) was studied at the bath gas (He) pressure of 1 bar over the 295–837 K temperature range. Hydroxyl radicals were produced in the fast reaction of electronically excited oxygen atoms O(¹D) with H₂O. The time-resolved kinetic profiles of hydroxyl radicals were recorded via UV absorption at around 308 nm using a DC discharge H₂O/Ar lamp. The reaction rate constant exhibits a pronounced V-shaped temperature dependence, negative in the low temperature range, 295–530 K (the rate constant decreases with temperature), and positive in the elevated temperature range, 530–837 K (the rate constant increases with temperature), with a turning point at 530 ± 10 K. The rate constant could not be adequately fitted with a standard 3-parameter modified Arrhenius expression. The data were fitted with a 5-parameter expression as: k₁ = 2.19 × 10⁻¹⁴(T/298)^2.43exp(15.02 kJ mol⁻¹/RT) + 1.71 × 10⁻¹⁰exp(−26.51 kJ mol⁻¹/RT) cm³molecule⁻¹s⁻¹ (295–837 K). In addition, a theoretically predicted pressure dependence for such reactions was experimentally observed for the first time.     

A Hot‐Segment‐Based Approach for the Design of Cross‐Amyloid Interaction Surface Mimics as Inhibitors of Amyloid Self‐Assembly

The design of inhibitors of protein–protein interactions mediating amyloid self‐assembly is a major challenge mainly due to the dynamic nature of the involved structures and interfaces. Interactions of amyloidogenic polypeptides with other proteins are important modulators of self‐assembly. Here we present a hot‐segment‐linking approach to design a series of mimics of the IAPP cross‐amyloid interaction surface with Aβ (ISMs) as nanomolar inhibitors of amyloidogenesis and cytotoxicity of Aβ, IAPP, or both polypeptides. The nature of the linker determines ISM structure and inhibitory function including both potency and target selectivity. Importantly, ISMs effectively suppress both self‐ and cross‐seeded IAPP self‐assembly. Our results provide a novel class of highly potent peptide leads for targeting protein aggregation in Alzheimer’s disease, type 2 diabetes, or both diseases and a chemical approach to inhibit amyloid self‐assembly and pathogenic interactions of other proteins as well.     

苹果酸酶结合域定点突变对烟酰胺腺嘌呤二核苷酸类似物催化性能的影响

通过对苹果酸酶(ME)辅酶结合域L310、Q401、L404饱和位点突变库与辅酶烟酰胺腺嘌呤二核苷酸(NAD⁺)类似物库的高通量筛选,研究了苹果酸酶结合域位点对NAD⁺及其类似物(B1~B7)催化活性的影响。 结果表明,突变后酶ME-Q401H/L404T对类似物B4的k_cat/K_m是野生型酶的50倍;突变后酶ME-L310M/Q401N对类似物B4的k_cat/K_m是野生型酶的16倍,对类似物B3的k_cat/K_m是野生型酶的5倍,因此通过对结合域定点突变,NAD⁺类似物的催化活性得到提高。     

A generic approach to decipher the mechanistic pathway of heterogeneous protein aggregation kinetics

Amyloid formation is a generic property of many protein/polypeptide chains. A broad spectrum of proteins, despite having diversity in the inherent precursor sequence and heterogeneity present in the mechanism of aggregation produces a common cross β-spine structure that is often associated with several human diseases. However, a general modeling framework to interpret amyloid formation remains elusive. Herein, we propose a data-driven mathematical modeling approach that elucidates the most probable interaction network for the aggregation of a group of proteins (α-synuclein, Aβ42, Myb, and TTR proteins) by considering an ensemble set of network models, which include most of the mechanistic complexities and heterogeneities related to amyloidogenesis. The best-fitting model efficiently quantifies various timescales involved in the process of amyloidogenesis and explains the mechanistic basis of the monomer concentration dependency of amyloid-forming kinetics. Moreover, the present model reconciles several mutant studies and inhibitor experiments for the respective proteins, making experimentally feasible non-intuitive predictions, and provides further insights about how to fine-tune the various microscopic events related to amyloid formation kinetics. This might have an application to formulate better therapeutic measures in the future to counter unwanted amyloidogenesis. Importantly, the theoretical method used here is quite general and can be extended for any amyloid-forming protein.

Amyloid formation is a generic property of many protein/polypeptide chains.     

Energy exchange network of inter‐residue interactions within a thermally fluctuating protein molecule: A computational study

Protein function is regulated not only by the structure but also by physical dynamics and thermal fluctuations. We have developed the computer program, CURrent calculation for proteins (CURP), for the flow analysis of physical quantities within thermally fluctuating protein media. The CURP program was used to calculate the energy flow within the third PDZ domain of the neuronal protein PSD‐95, and the results were used to illustrate the energy exchange network of inter‐residue interactions based on atomistic molecular dynamics simulations. The removal of the α3 helix is known to decrease ligand affinity by 21‐fold without changing the overall protein structure; nevertheless, we demonstrated that the helix constitutes an essential part of the network graph. © 2015 Wiley Periodicals, Inc.     

Acridine Based N-Acylhydrazone Derivatives as Potential Anticancer Agents: Synthesis,Characterization and ctDNA/HSA Spectroscopic Binding Properties

A series of novel acridine N-acylhydrazone derivatives have been synthesized as potential topoisomerase I/II inhibitors, and their binding (calf thymus DNA—ctDNA and human serum albumin—HSA) and biological activities as potential anticancer agents on proliferation of A549 and CCD-18Co have been evaluated. The acridine-DNA complex 3b (-F) displayed the highest K_b value (K_b = 3.18 × 10³ M⁻¹). The HSA-derivatives interactions were studied by fluorescence quenching spectra. This method was used for the calculation of characteristic binding parameters. In the presence of warfarin, the binding constant values were found to decrease (K_SV = 2.26 M⁻¹, K_b = 2.54 M⁻¹), suggesting that derivative 3a could bind to HSA at Sudlow site I. The effect of tested derivatives on metabolic activity of A549 cells evaluated by the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide or MTT assay decreased as follows 3b(-F) > 3a(-H) > 3c(-Cl) > 3d(-Br). The derivatives 3c and 3d in vitro act as potential dual inhibitors of hTopo I and II with a partial effect on the metabolic activity of cancer cells A594. The acridine-benzohydrazides 3a and 3c reduced the clonogenic ability of A549 cells by 72% or 74%, respectively. The general results of the study suggest that the novel compounds show potential for future development as anticancer agents.