Photoelectron spectra and ion chemistry of imidazolide

The 351.1 nm photoelectron spectrum of imidazolide anion has been measured. The electron affinity (EA) of the imidazolyl radical is determined to be 2.613 +/- 0.006 eV. Vibrational frequencies of 955 +/- 15 and 1365 +/- 20 cm(-1) are observed in the spectrum of the (2)B1 ground state of the imidazolyl radical. The main features in the spectrum are well-reproduced by Franck-Condon simulation based on the optimized geometries and the normal modes obtained at the B3LYP/6-311++G(d,p) level of density functional theory. The two vibrational frequencies are assigned to totally symmetric modes with C-C and N-C stretching motions. Overtone peaks of an in-plane nontotally symmetric mode are observed in the spectrum and attributed to Fermi resonance. Also observed is the photoelectron spectrum of the anion formed by deprotonation of imidazole at the C5 position. The EA of the corresponding radical, 5-imidazolyl, is 1.992 +/- 0.010 eV. The gas phase acidity of imidazole has been determined using a flowing afterglow-selected ion tube; delta(acid)G298 = 342.6 +/- 0.4 and delta(acid)H298 = 349.7 +/- 0.5 kcal mol(-1). From the EA of imidazolyl radical and gas phase acidity of imidazole, the bond dissociation energy for the N-H bond in imidazole is determined to be 95.1 +/- 0.5 kcal mol(-1). These thermodynamic parameters for imidazole and imidazolyl radical are compared with those for pyrrole and pyrrolyl radical, and the effects of the additional N atom in the five-membered ring are discussed.     

Oxidation products of 2-arylphenanthro-[9,10-d]imidazoles—II : Structure and photochromism of oxidation products of 2-(4-methoxyphenyl)-phenanthro-[9,10-d]imidazole

By ferricyanide oxidation of 2-(4-methoxyphenyl)phenanthro[9,10-d]imidazole, three new photochromic compounds were obtained. These were 4-ethoxy-4H-, 4-methoxy-4H- and 2-methoxy-2H-phenanthro[9,10-d]imidazoles. These compounds gave the 2-(4-methoxyphenyl)-phenanthro[9,10-d]imidazolyl radical and acetaldehyde or formaldehyde by light irradiation. The imidazolyl radical dimerized gradually in the dark and the dimer dissociated to the imidazolyl radical on heating.     

A peroxide-bridged imidazole dimer formed from a photochromic naphthalene-bridged imidazole dimer

2,4,5-Triphenylimidazole (lophine) is known as the first chemiluminescence substrate, and its oxidized derivative, the 2,4,5-triphenylimidazolyl radical, corresponds to the coloured species in the photochromic reaction of hexaarylbiimidazole (HABI). We report the first direct observation of the O(2) adduct of the imidazolyl radical that forms the end-on peroxide-bridged imidazole dimer. The ring-opening reaction of the peroxide-bridged imidazole dimer leading to the formation of an N-benzoylbenzamidine derivative supports the presence of the 4,5-epidioxide of lophine as a reaction intermediate of its chemiluminescence.     

PHOTO-CIDNP STUDY OF PYRIMIDINE DIMER SPLITTING II: REACTIONS INVOLVING PYRIMIDINE RADICAL ANION INTERMEDIATES

A series of photo-CIDNP (chemically induced dynamic nuclear polarization) experiments were performed on pyrimidine monomers and dimers, using the electron-donor Nα-acetyltryptophan (AcTrp) as a photosensitizer. The CIDNP spectra give evidence for the existence of both the dimer radical anion, which is formed by electron transfer from the excited AcTrp* to the dimer, and its dissociation product, the monomer radical anion. The AcTrp spectra are completely different from those obtained with an oxidizing sensitizer like anthraquinone-2-sulfonate, because of different unpaired electron spin density distributions in pyrimidine radical anion and cation. In the spectra of the anti (1,3-dimethyluracil) dimers, polarization is detected that originates from a spin-sorting process in the dimer radical pair, pointing to a relatively long lifetime of the dimer radical anions involved. Although the dimer radical anions of the 1,1′-trimethylene-bridged pyrimidines may have a relatively long lifetime as well, their protons have only very weak hyperfine interaction, which explains why no polarization originating from the dimer radical pair is detected. In the spectra of the bridged pyrimidines, polarized dimer protons are observed as a result of spin sorting in the monomer radical pair, from which it follows that the dissociation of dimer radical anion into monomer radical anion is reversible. A study of CIDNP intensities as a function of pH shows that a pH between 3 and 4 is optimal for observing monomer polarization that originates from spin-sorting in the monomer radical pair. At higher pH the geminate recombination polarization is partly cancelled by escape polarization arising in the same product.     

The dimer radical anion of acetonitrile

The dimer radical anion of acetonitrile has been identified in the upper crystalline phase of acetonitrile after γ irradiation at 77°K, whereas the monomer radical anion is produced in the lower crystalline phase under the same irradiation conditions. ESR studies on these species in aligned and polycrystalline samples are summarized and possible structures for the dimer radical anion are discussed. Dimer radical anions of other organic cyanides have also been observed in γ-irradiated crystals.     

The nucleophilic activity of the imidazole group in micelles

The acetylation of a long-chain imidazole derivative, N^α-dodecanoyl-L-histidine, by p-nitrophenyl acetate is accelerated by the presence of positively or negatively charged micelles. The effects observed with the anionic micelles can be readily understood on the basis of an enrichment of the reactants in the micellar phase. In cationic micelles, however, at pH values above 8 the acceleration is additionally caused by a strong facilitation of a second reaction pathway. Very likely this pathway consists in the nucleophilic attack of the imidazolyl anion on the carboxylic acid ester group.     

Intramolecular charge resonance in dimer radical anions of di-, tri-, tetra-, and pentaphenylalkanes

Intramolecular dimer radical anions of di-, tri-, tetra-, and pentaphenylalkanes were investigated on the basis of absorption spectral measurements during γ-radiolysis in 2-methyltetrahydrofuran (MTHF) glassy matrix at 77 K and theoretical calculations. The absorption spectrum of 1,1,2,2-tetraphenylethane (1,1,2,2-Ph(4)E) radical anion showed two bands in the near-infrared (NIR) region (900-2600 nm). One band observed at shorter wavelength than 2000 nm is assigned to the intramolecular charge resonance (CR) band between two phenyl groups of the 1,1-diphenylmethyl chromophore (1,1-dimer radical anion). The intramolecular CR band of the 1,1-dimer radical anion was observed for various alkanes having 1,1-diphenylmethyl chromophore such as 1,1,1-triphenylmethane (1,1,1-Ph(3)M), 1,1,1,1-tetraphenylmethane (1,1,1,1-Ph(4)M), and so on. The other intramolecular CR band observed at longer wavelength than 2200 nm is assigned to intramolecular dimer radical anion between two phenyl groups of the 1,2-diphenylethyl chromophore (1,2-dimer radical anion). The intramolecular CR band of the 1,2-dimer radical anion was observed for various alkanes having a 1,2-diphenylethyl chromophore, such as 1,1,2-triphenylethane (1,1,2-Ph(3)E), 1,1,2,2-Ph(4)E, and 1,1,1,2,2-pentaphenylethane (1,1,1,2,2-Ph(5)E) and so on. No dimer radical anion was observed for 1,n-diphenylalkanes (n > 2) without 1,1-diphenylmethyl chromophore. The relationship between the structure and negative charge delocalization over two phenyl groups connected by an sp(3) carbon is discussed.     

Electrochemical reduction of 4-aminopyrimidine and cytosine in dimethyl sulfoxide

The electrochemical reduction in dimethyl sulfoxide of cytosine (4-amino-2-hydroxypyrimidine) and one of its model compounds (4-aminopyrimidine) has been examined. Initially, each pyrimidine (RH) undergoes a reversible, diffusion-controlled one-electron reduction of the 3,4 N=C double bond to the radical anion (RH⁻, which can dimerize or can react with the parent compound (father-son reaction) to form the neutral free radical (RH₂) and the pyrimidine anion (R⁻); the radical can dimerize or be further reduced, perhaps after effectve protonation; the anion forms a redox couple with Hg(1)−Hg(0). Other coupled reactions, which may occur under suitable conditions, include reaction between anionic dimer (⁻RH−RH⁻) and RH, proton-assisted decomposition of dimer to form reducible RH₃⁺, and deamination of the two-electron reduction product (RH₃), which is a gem diamine, to generate 2-hydroxypyrimidine or pyrimidine itself. The effects on the electrochemical redox pattern of added water, strong acid (HClO₄), weak acid (chloroacetic and benzoic acids), and strong base (Et₄NOH) are described.     

Model Studies of DNA Photorepair: Enthalpy of Cleavage of a Pyrimidine Dimer Measured by Photothermal Beam Deflection Calorimetry

Abstract— The enzyme DNA photolyase mediates the repair of pyrimidine dimers. This repair step, a net retro [²+2] reaction, proceeds through either the cation or anion radical of the pyrimidine dimer. In order to understand how electron transfer makes the repair process possible, its energetics have been examined by photothermal beam deflection calorimetry, fluorescence quenching and quantum yield studies. The enthalpy for the cleavage reaction of cis-syn 1,3-dimethylthymine dimer itself was found to be -19 kcal/mol. In addition, from the redox potentials, the enthalpies for the cleavage reactions of the dimer cation radical and the anion radical were determined to be -19 kcal/mol and -28 kcal/mol, respectively.     

Synthesis of new photochromic compounds from the dimer of arylphenanthroimidazoles

Treatment of the dimer of 2-arylphenanthro[9,10-d]imidazoles with nucleophilic compounds such as alcohols, aliphatic amines, and carboxylic acids afforded 2-substituted-2H- and 4-substituted-4H-2-arylphenanthro[9,10-d]isoimidazoles. These products showed a characteristic photochromism by dissociation to a stable imidazolyl radical.     

A straightforward one-pot synthesis of biologically important imidazolyl alcohols via catalytic epoxide ring-opening reactions

A general and efficient method for the preparation of biologically important imidazolyl alcohols via ring-opening of epoxides with N-silylated imidazole catalyzed by LiBr under solvent-free conditions is reported.     

Charged states of α,ω-dicyano β,β'-dibutylquaterthiophene as studied by in situ ESR UV-vis NIR spectroelectrochemistry

The influence of the molecular structure on the stabilization of charged states was studied in detail by in situ ESR UV-vis NIR spectroelectrochemistry at a novel α,ω-dicyano substituted β,β'-dibutylquaterthiophene (DCNDBQT) and the electrochemically generated cation and anion radicals have been proved for the first time. The voltammetry of DCNDBQT results in two separate oxidation steps with the reversible first one. The experimental absorption maxima at 646 and 1052 nm together with the calculated ones (by DFT method) as well as an ESR signal at the first anodic step prove the presence of a radical cation. Three additional optical bands (554, 906, and 1294 nm for CT-transition) can be attributed to the formation of cation radical dimer. The dicationic structure formed in the second oxidation step is not stable. The stabilization proceeds via a dimer formation in two chemical follow-up reactions. The existence of the dimeric structures was proved by ex situ MALDI TOF mass spectrometry. As the substitution by cyano groups opens the route to cathodic reductions, DCNDBQT shows a single quasi-reversible reduction step. Here, the in situ ESR UV-vis NIR spectroelectrochemical measurements and theoretical calculations let us confirm the electrochemical generation of an anion radical. As we found a low number of anion radicals by quantitative ESR spectroelectrochemistry and an appearance of additional bands in the UV-vis NIR absorption spectra, the formation of dimeric structures must be considered and was corroborated by mass spectrometry. The role of dimerization in the reaction mechanism of the DCNDBQT oxidation and reduction are discussed in general. The experimental results were interpreted using the quantum chemical calculations based on density functional theory.     

对硝基苯酚在质子惰性溶剂中的氧化还原机理

利用现场红外光谱电化学法、红外光谱循环伏吸法(CVA)和导数循环伏吸法(DCVA)研究了对硝基苯酚(PNP)在乙腈中的氧化还原机理,并结合B3LYP方法在6-311++G*水平上计算得出反应中自由基阴离子和二聚体可能的结构.通过循环伏安曲线(CV)和快速扫描红外光谱验证了在电化学还原过程中PNP在乙腈溶剂中发生较复杂的自质子化反应,并且PNP的电化学行为受其浓度的影响.当PNP浓度较高时,PNP在还原成自由基阴离子后发生自质子化作用,然后自由基阴离子与质子化产物得到电子发生二聚反应,随后PNP阴离子还原成二价阴离子;当PNP浓度较低时,电化学还原机理会发生改变,二聚现象消失,阴离子自由基继续还原.     

Ring opening of the cyclobutane in a thymine dimer radical anion

The reactions of hydrated electrons (e(aq) (-)) with thymine dimer 2 and thymidine have been investigated by radiolytic methods coupled with product studies, and addressed computationally by means of BB1K-HMDFT calculations. Pulse radiolysis revealed that one-electron reduction of the thymine dimer 2 affords the radical anion of thymidine (5) with t(1/2)<35 ns. Indeed, the theoretical study suggests that radical anion 3, in which the spin density and charge distribution are located in both thymine rings, undergoes a fast partially ionic splitting of the cyclobutane with a half-life of a few ps. This model fits with the in vivo observation of thymine dimer repair in DNA by photolyase. gamma-Radiolysis of thymine dimer 2 demonstrates that the one-electron reduction and the subsequent cleavage of the cyclobutane ring does not proceed by means of a radical chain mechanism, that is, in this model reaction the T(-)* is unable to transfer an electron to the thymine dimer 2.     

On the Dynamics of the Carbon–Bromine Bond Dissociation in the 1-Bromo-2-Methylnaphthalene Radical Anion

This paper studies the mechanism of electrochemically induced carbon–bromine dissociation in 1-Br-2-methylnaphalene in the reduction regime. In particular, the bond dissociation of the relevant radical anion is disassembled at a molecular level, exploiting quantum mechanical calculations including steady-state, equilibrium and dissociation dynamics via dynamic reaction coordinate (DRC) calculations. DRC is a molecular-dynamic-based calculation relying on an ab initio potential surface. This is to achieve a detailed picture of the dissociation process in an elementary molecular detail. From a thermodynamic point of view, all the reaction paths examined are energetically feasible. The obtained results suggest that the carbon halogen bond dissociates following the first electron uptake follow a stepwise mechanism. Indeed, the formation of the bromide anion and an organic radical occurs. The latter reacts to form a binaphthalene intrinsically chiral dimer. This paper is respectfully dedicated to Professors Anny Jutand and Christian Amatore for their outstanding contribution in the field of electrochemical catalysis and electrosynthesis.     

Long rod-like array of bis(imidazolyl)porphyrinatocobalt(III) by successive complementary coordination

Simple bis(imidazolyl)porphyrin cobalt(III) complex was found to form a long polymeric array by complementary coordination of imidazole to cobalt ion. Formation of higher ordered assemblies was also observed.     

Anthralin: primary products of its redox reactions

One-electron reduction significantly enhances the ability of anthralin, 1, to act as a hydrogen atom donor. On annealing of an MTHF glass in which the radical anion of anthralin, 1*-, is generated radiolytically, this species decays mainly by loss of H* to give the anthralyl anion, 2- . On the other hand, radicals formed on radiolysis of matrices that are suitable for the generation of radical anions or cations are capable to abstract H* from anthralin to give the anthralyl radical, 2* . Both 2- and 2* are obtained simultaneously by mesolytic cleavage of the radical anion of the anthralin dimer. Contrary to general assumptions, the anthralyl radical is found to be much more reactive toward oxygen than the anion. All intermediates are characterized spectroscopically and by reference to quantum chemical calculations. Attempts to generate the radical cation of anthralin by X-irradiation of an Ar matrix containing anthralin led also to significant formation of its radical anion, i.e., anthralin acts apparently as an efficient electron trap in such experiments.     

Behavior of electrogenerated bases in room-temperature ionic liquids

The reductive electrochemistry of substituted benzophenones in the aprotic room-temperature ionic liquid (RTIL) 1-butyl-1-methylpyrrolidinium bistriflimide occurs via two consecutive one-electron processes leading to the radical anion and dianion, respectively. The radical anion exhibited electrochemical reversibility at all time-scales whereas the dianion exhibited reversibility at potential sweep rates of >or=10 V s(-1), collectively indicating the absence of strong ion-paring with the RTIL cation. In contrast, reduction in 1-butyl-3-methylimidazolium bistriflimide is complicated by proton-transfer from the [Bmim] cation. At low potential sweep rates, reduction involves a single two-electron process characteristic of either an electrochemical, chemical, electrochemical (ECE) or disproportion-type (DISP1) mechanism. The rate of radical anion protonation in [Bmim] is governed by basicity and conforms to the Hammett free-energy relation. At higher potential sweep rates in [Bmim][NTf2], reduction occurs via two consecutive one-electron processes, giving rise to the partially reversible generation of the radical anion and the irreversible generation of the dianion, respectively. Also, the redox potentials for the reversible parent/radical anion couples were found to be a linear function of Hammett substituent constants in both RTIL media and exhibited effectively equivalent solvent-dependent reaction constants, which are similar to those for reduction in polar molecular solvents such as acetonitrile or alcohols.     

Do Photolyases Need To Provide Considerable Activation Energy for the Splitting of Cyclobutane Pyrimidine Dimer Radical Anions?

cis-syn Cyclobutane pyrimidine dimers, major UV-induced DNA lesions, are efficiently repaired by DNA photolyases. The key step of the repair reaction is a light-driven electron transfer from the FADH(-) cofactor to the dimer; the resulting radical anion splits spontaneously. Whether the splitting reaction requires considerable activation energy is still under dispute. Recent reports show that the splitting reaction of a dimer radical anion has a significant activation barrier (0.45 eV), and so photolyases have to provide considerable energy. However, these results contradict observations that cis-syn dimer radical anions split into monomers at -196 degrees C, and that the full process of DNA photoreactivation was fast (1.5-2 ns). To investigate the activation energies of dimer radical anions, three model compounds 1-3 were prepared. These include a covalently linked cyclobutane thymine dimer and a tryptophan residue (1) or a flavin unit (3), and the covalently linked uracil dimer and tryptophan (2). Their properties of photosensitised splitting of the dimer units by tryptophan or flavin unit were investigated over a large temperature range, -196 to 70 degrees C. The activation energies were obtained from the temperature dependency of splitting reactions for 1 and 2, 1.9 kJ mol(-1) and 0.9 kJ mol(-1) for the thymine and uracil dimer radical anions, respectively. These values are much lower than that obtained for E. coli photolyase (0.45 eV), and are surmountable at -196 degrees C. The activation energies provide support for previous observations that repair efficiencies for uracil dimers are higher than thymine dimers, both in enzymatic and model systems. The mechanisms of highly efficient enzymatic DNA repair are discussed.     

Kinetics and mechanism of electron-induced splitting of a cyclobutane pyrimidine dimer with or without an electron acceptor

DNA repair has received heightened attention in recent years as ozone depletion threatens to significantly increase DNA damage by UVB radiation[1—6]. The major lesions formed in DNA by this radiation are cis-syn cyclobutane pyrimidine dimers, which are created by the linkage of two neighboring pyrimidine bases in DNA via C5-C5 and C6-C6 atoms by [2+2] cycloaddition[2,5—8]. This potentially lethal or mutagenic damage can be repaired either by the removal of the damaged bases by excisio…